Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002912.1 Hibiscus syriacus cultivar Beakdansim tig00006019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96118

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
532--575
21
2.1
21
86
0
61
15
27
27
29
1.96
3278--3331
23
2.3
23
96
0
99
37
12
11
38
1.79
10585--10619
3
11.7
3
100
0
70
34
0
0
65
0.93
10914--10971
31
1.9
30
82
6
73
58
1
3
36
1.25
16935--16959
10
2.5
10
100
0
50
72
0
20
8
1.10
17295--17433
74
1.9
72
85
8
192
24
14
15
45
1.84
17295--17449
74
2.1
73
82
10
185
23
14
16
45
1.84
20830--21208
182
2.1
182
87
4
543
30
15
10
44
1.79
21197--21707
114
4.6
112
87
3
742
27
13
10
47
1.76
34050--34094
18
2.5
18
82
7
56
24
20
13
42
1.87
36386--36421
3
11.7
3
88
5
54
61
2
0
36
1.11
36542--36829
117
2.6
110
82
10
313
25
19
15
39
1.91
36768--37109
136
2.6
135
87
3
471
26
21
16
34
1.95
36895--37555
227
2.9
227
90
0
1011
24
22
16
35
1.95
37923--37962
15
2.7
15
88
0
62
25
25
25
25
2.00
37975--38757
40
20.5
38
81
11
155
40
12
17
29
1.86
37954--38098
74
2.0
74
88
2
220
43
12
20
23
1.86
38078--38135
28
2.0
29
90
3
91
41
15
12
31
1.84
38069--38240
66
2.6
67
82
9
199
38
15
19
27
1.91
38204--38779
40
14.4
40
93
0
931
40
12
16
30
1.85
38290--38358
23
3.3
23
62
29
62
40
14
13
31
1.84
44029--44060
6
5.3
6
92
0
55
53
12
15
18
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44014--44060
12
3.8
12
85
5
58
51
10
17
21
1.75
47617--47670
25
2.2
25
100
0
108
24
7
20
48
1.75
48633--48709
21
3.9
20
73
17
63
37
2
0
59
1.11
48660--48714
2
28.0
2
83
10
69
43
3
1
50
1.30
48745--48804
17
3.2
17
70
20
57
30
5
1
63
1.25
48976--49022
18
2.8
16
81
15
58
14
12
0
72
1.13
49050--49106
8
6.6
9
72
20
50
17
3
1
77
1.00
50691--50728
17
2.2
17
95
0
67
13
23
44
18
1.85
50684--50744
24
2.5
25
77
22
76
18
24
40
16
1.90
50663--50701
7
5.6
7
88
11
62
23
28
30
17
1.97
57859--57887
13
2.1
14
93
6
51
24
31
27
17
1.97
57877--57924
17
2.9
17
93
6
82
10
22
47
18
1.79
57859--57887
7
4.3
7
91
8
51
24
31
27
17
1.97
60072--60139
35
1.9
36
88
8
104
47
4
0
48
1.22
62227--62286
31
1.9
31
96
0
111
21
13
16
48
1.80
65782--65821
16
2.3
18
84
16
50
70
5
2
22
1.19
67921--67949
2
14.5
2
100
0
58
51
0
0
48
1.00
70926--70972
11
4.2
11
78
13
51
21
2
2
74
1.03
71027--71068
3
13.3
3
87
9
50
33
0
2
64
1.07
71287--71346
11
5.5
11
71
11
52
21
1
6
70
1.20
71293--71368
22
3.5
22
72
3
82
25
2
7
64
1.34
71281--71370
43
2.1
43
100
0
180
22
2
6
68
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72611--72635
12
2.1
12
100
0
50
40
8
8
44
1.63
72511--72714
74
2.7
75
84
7
238
43
4
6
44
1.52
72654--72814
61
2.5
62
81
11
175
41
3
6
48
1.46
72834--72867
5
7.0
5
93
6
61
38
0
0
61
0.96
74093--74119
4
6.8
4
100
0
54
22
0
0
77
0.76
74146--74183
10
3.9
10
89
6
51
15
10
5
68
1.36
74146--74183
19
2.0
20
84
5
51
15
10
5
68
1.36
74235--74277
2
21.5
2
100
0
86
48
0
0
51
1.00
79420--79748
84
4.0
83
83
5
362
31
24
19
24
1.98
79788--80252
84
5.6
83
81
4
578
29
25
20
24
1.99
79591--79959
204
1.8
200
87
3
551
28
26
20
24
1.99
79509--80031
284
1.8
282
85
3
735
28
26
20
24
1.99
79759--80324
249
2.3
249
92
0
934
29
25
20
24
1.99
79761--80324
165
3.4
163
78
6
562
29
25
20
24
1.99
79761--80322
84
6.8
81
78
7
459
29
25
20
24
1.99
80903--81189
35
7.9
36
73
17
195
42
5
6
44
1.54
80955--81183
72
3.1
73
79
12
238
43
5
6
44
1.53
81205--81252
26
1.9
26
87
8
73
37
0
8
54
1.31
82459--82501
13
3.3
13
81
18
54
20
0
0
79
0.74
82460--82501
9
4.9
9
94
5
70
21
0
0
78
0.75
82570--82667
2
49.5
2
97
2
189
48
0
0
51
1.00
83319--83424
56
1.9
54
88
3
158
41
12
12
33
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83658--83708
2
25.0
2
96
4
93
49
0
1
49
1.12

Tables:   1

The End!