genome.fa.s2913.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002913.1 Hibiscus syriacus cultivar Beakdansim tig00006023_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65456

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3845--4218	125	3.0	125	88	1	527	32	16	25	25	1.96
5488--5646	37	4.3	37	84	4	198	35	22	18	23	1.95
5498--5646	73	2.0	73	87	5	212	34	22	18	24	1.96
6024--6287	54	4.9	54	83	1	332	34	17	25	21	1.96
6024--6328	108	2.8	108	83	3	355	34	17	24	24	1.96
6170--6876	55	13.2	54	79	9	519	32	16	24	27	1.96
6294--6871	165	3.6	165	79	9	574	32	15	23	28	1.95
6519--6604	29	3.1	29	60	27	67	32	13	18	34	1.90
6526--6611	27	3.1	27	61	26	63	33	12	22	31	1.91
6574--6669	45	2.1	45	92	0	156	29	16	25	29	1.97
6518--6812	100	2.9	98	80	10	287	31	15	24	28	1.96
7000--7039	3	12.7	3	84	10	53	37	2	0	60	1.11
19472--19514	20	2.2	20	83	8	52	37	4	2	55	1.33
21345--21382	20	2.0	20	94	5	69	23	26	31	18	1.97
21811--21836	2	13.0	2	100	0	52	50	0	0	50	1.00
22710--22770	21	3.2	21	65	26	62	39	13	21	26	1.90
22701--22997	36	8.0	36	90	1	351	38	14	20	26	1.91
22896--23578	40	17.0	40	92	2	1039	39	11	18	30	1.86
23459--23523	23	3.1	23	61	38	56	36	10	20	32	1.87
32498--32535	18	2.1	18	90	0	58	21	10	36	31	1.87
35677--35902	117	1.9	117	99	0	443	28	19	14	38	1.90
37278--37351	30	2.5	29	74	12	69	66	10	1	21	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39055--39131	31	2.6	28	81	15	93	38	9	12	38	1.76
39207--39278	31	2.3	32	80	7	85	44	8	9	37	1.68
45397--45529	60	2.2	60	80	9	146	33	15	18	31	1.93
47216--47303	31	2.9	31	76	8	101	44	18	2	35	1.62
63493--63563	25	2.9	25	81	6	65	47	4	0	47	1.21

Tables:   1

The End!