genome.fa.s2914.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002914.1 Hibiscus syriacus cultivar Beakdansim tig00006024_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180357

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415--465	24	2.1	24	92	0	84	31	39	7	21	1.82
11251--11282	15	2.1	15	100	0	64	21	12	15	50	1.77
27717--27785	3	23.0	3	79	5	77	59	0	0	40	0.97
27710--27785	26	2.9	26	80	7	84	57	0	0	42	0.98
27933--28366	76	5.7	76	97	0	814	34	23	19	22	1.97
27933--28366	153	2.8	152	98	0	823	34	23	19	22	1.97
28298--28594	45	6.5	45	89	4	443	32	20	23	23	1.98
28332--28612	93	3.1	93	90	5	471	33	20	23	23	1.97
28675--28808	36	3.7	36	71	3	124	37	13	17	31	1.89
28660--28802	73	2.0	73	94	0	250	37	13	18	29	1.90
28816--29137	166	1.9	165	91	3	531	38	13	13	34	1.84
30072--30175	54	1.9	54	90	0	163	23	22	15	39	1.91
39108--39156	13	3.8	13	76	10	55	73	0	0	26	0.83
39111--39198	16	5.7	15	73	15	63	71	0	3	25	1.01
39111--39168	23	2.6	23	78	10	66	72	0	1	25	0.94
41819--41844	2	13.0	2	100	0	52	50	0	0	50	1.00
41839--41918	31	2.6	29	80	16	90	57	0	0	42	0.98
41846--41906	3	20.3	3	83	6	79	60	0	0	39	0.97
42695--42729	16	2.1	17	94	5	63	31	8	25	34	1.86
49714--49756	21	2.0	22	86	8	63	67	6	4	20	1.33
50911--50986	3	24.3	3	89	10	109	64	0	1	34	1.02
51494--51703	84	2.5	84	81	2	251	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51785--52739	106	9.0	106	94	0	1608	22	17	25	33	1.96
57642--57724	3	26.3	3	90	9	114	65	0	1	33	1.01
61215--61402	59	3.2	59	93	2	317	29	11	15	43	1.82
62389--62435	16	2.9	17	84	6	53	42	0	2	55	1.12
77236--77397	61	2.7	61	81	1	157	37	17	1	43	1.60
81659--81688	16	1.9	15	93	6	51	26	0	10	63	1.26
86269--86314	2	23.0	2	100	0	92	50	0	0	50	1.00
87585--87619	14	2.5	14	90	0	61	20	40	34	5	1.76
87672--87805	29	4.6	29	93	0	205	23	29	34	11	1.91
90244--90306	30	2.1	31	90	3	101	55	6	9	28	1.56
96402--96871	53	8.7	53	86	5	597	27	28	14	29	1.95
96402--96896	108	4.6	108	89	5	659	27	28	14	29	1.95
96378--96896	161	3.2	161	85	5	658	27	27	14	29	1.95
96633--97113	161	3.0	159	79	11	397	26	26	16	30	1.97
96873--97324	51	8.8	51	86	2	548	22	24	20	32	1.98
97717--97863	36	4.1	36	86	6	163	20	19	22	37	1.94
98587--98889	124	2.4	124	90	2	448	23	27	17	32	1.96
148005--148037	16	2.1	16	100	0	66	57	24	12	6	1.57
148103--148176	10	7.6	10	70	27	61	59	20	10	9	1.58
148107--148171	16	4.1	16	91	0	112	58	21	12	7	1.59
148110--148178	16	4.3	16	81	7	86	59	20	10	10	1.58
149214--149269	14	4.3	14	82	17	84	51	26	14	7	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149207--149254	10	4.4	10	78	19	51	54	25	12	8	1.65
149207--149268	24	2.6	24	97	0	115	53	25	12	8	1.66
154652--154677	5	5.2	5	100	0	52	80	0	19	0	0.71
160470--160495	2	13.0	2	100	0	52	50	0	0	50	1.00
164539--164567	14	2.1	14	100	0	58	55	0	6	37	1.27
176304--176427	32	3.9	31	77	9	108	29	17	19	33	1.95
176322--176461	31	4.5	31	75	11	99	28	17	20	33	1.95
177223--177263	21	2.0	21	85	0	55	29	21	19	29	1.98
178854--178883	8	3.8	8	100	0	60	10	0	0	90	0.47
180049--180288	71	3.4	72	89	5	348	17	12	43	27	1.84

Tables:   1

The End!