genome.fa.s2915.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002915.1 Hibiscus syriacus cultivar Beakdansim tig00006027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71936

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9428--9545	61	2.0	60	84	1	155	27	19	16	35	1.94
13289--13342	20	2.7	20	91	0	90	25	33	29	11	1.91
13329--13361	14	2.4	14	94	0	57	24	39	30	6	1.79
13289--13342	10	5.4	10	77	16	58	25	33	29	11	1.91
13360--13424	33	2.0	33	87	6	96	27	24	36	10	1.89
13565--13621	29	2.0	29	100	0	114	19	31	35	14	1.91
13963--13995	2	16.5	2	100	0	66	51	0	0	48	1.00
14037--14064	14	2.0	14	100	0	56	21	14	21	42	1.88
14228--14340	9	13.2	8	69	20	52	60	0	0	39	0.97
14216--14334	34	3.5	34	96	2	204	59	0	0	40	0.97
14261--14318	25	2.4	25	77	11	59	63	0	0	36	0.94
14925--14961	19	1.9	19	100	0	74	48	10	0	40	1.38
15661--15694	13	2.8	12	86	8	50	5	2	23	67	1.26
15856--15899	24	1.9	24	90	9	74	22	25	0	52	1.48
18057--18125	23	3.0	22	66	22	61	43	4	1	50	1.30
18056--18144	46	1.9	46	90	0	142	41	4	3	50	1.39
22452--22492	13	3.1	13	92	3	64	41	7	14	36	1.74
22536--22564	14	2.1	14	100	0	58	37	0	0	62	0.96
22955--23016	21	2.8	23	87	7	92	22	19	32	25	1.97
36618--37072	80	5.7	80	91	1	700	22	20	25	31	1.98
42141--42591	80	5.7	80	91	1	665	21	20	25	31	1.98
42138--42591	239	1.9	239	88	2	698	21	20	25	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46736--46847	29	3.9	29	98	0	215	19	44	27	8	1.79
46861--46953	10	9.3	10	70	17	68	22	47	19	10	1.80
46871--46973	30	3.4	30	89	0	170	23	47	18	10	1.79
47591--47634	21	2.1	21	91	0	70	29	0	15	54	1.42
47611--47671	28	2.2	28	93	0	104	31	0	13	55	1.38
50782--51049	10	26.7	10	66	21	53	39	0	14	45	1.46
50729--51149	60	7.2	60	90	7	642	39	0	14	46	1.44
50902--51050	21	7.4	20	62	20	60	40	0	14	44	1.45
51033--51145	48	2.4	48	93	3	192	41	0	11	46	1.40
51070--51163	24	3.9	24	76	15	104	39	0	13	46	1.44
51118--51164	14	3.6	14	75	21	57	36	0	17	46	1.48
51236--51269	7	4.9	7	100	0	68	55	14	14	14	1.69
51265--51402	26	5.5	26	73	17	96	44	2	10	42	1.50
51265--51483	98	2.2	98	96	1	404	43	1	10	44	1.48
51336--51483	26	5.9	26	73	12	121	43	2	9	45	1.48
51445--51536	24	3.8	24	73	9	80	43	2	4	50	1.34
51444--51539	11	7.9	12	75	14	81	43	2	4	50	1.33
51496--51545	24	2.1	24	81	7	57	48	2	4	46	1.32
51625--51689	14	5.2	13	75	17	50	38	7	7	46	1.61
51636--51669	11	3.2	11	83	8	52	38	8	5	47	1.59
51636--51679	21	2.1	21	86	0	61	40	9	4	45	1.56
51674--51706	17	1.9	17	100	0	66	36	6	9	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53853--53883	15	2.1	14	94	5	53	54	6	0	38	1.26
53858--53904	16	3.0	16	84	9	53	59	10	0	29	1.31
54007--54050	12	3.5	12	85	11	61	54	18	0	27	1.44
54095--54206	42	2.6	43	74	13	115	49	11	0	39	1.39
54076--54178	46	2.2	47	83	13	124	49	11	0	38	1.39
54147--54234	41	2.2	39	78	10	88	46	10	1	42	1.45
54270--54308	16	2.3	18	86	8	55	56	5	0	38	1.22
54520--54626	49	2.2	49	91	6	175	22	18	38	20	1.94
54661--54755	29	3.3	29	95	0	163	23	32	30	13	1.93
54742--54813	32	2.2	32	90	0	117	8	30	30	30	1.87
56310--56350	17	2.5	16	80	4	55	48	0	0	51	1.00
56318--56370	22	2.5	22	79	11	65	50	0	0	49	1.00
59370--59989	138	4.5	138	95	0	1066	22	22	22	32	1.98
60122--60224	23	4.7	23	68	20	78	44	0	18	35	1.56
60119--60243	63	2.0	63	92	3	207	40	0	21	36	1.59
67919--67989	16	4.4	16	71	11	56	45	2	2	49	1.31
67941--68001	31	2.0	31	87	6	88	49	0	1	49	1.10
67985--68119	72	1.9	72	84	3	182	46	4	6	42	1.50
68839--68865	10	2.7	10	100	0	54	14	33	0	51	1.43
68905--68938	17	1.9	18	88	5	52	26	5	0	67	1.13

Tables:   1

The End!