genome.fa.s2916.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002916.1 Hibiscus syriacus cultivar Beakdansim tig00006029_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58262

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4733--4760	2	14.0	2	100	0	56	50	0	0	50	1.00
9612--9647	17	2.2	17	95	5	65	52	0	25	22	1.47
12155--12352	96	2.0	97	93	1	335	39	14	14	32	1.85
18227--18266	21	1.9	21	89	0	62	57	5	10	27	1.52
19921--19951	2	15.5	2	100	0	62	51	0	0	48	1.00
22787--22852	31	2.1	31	91	0	105	25	24	18	31	1.97
24812--24872	31	2.0	31	90	0	95	22	26	13	37	1.91
27742--27770	2	15.0	2	92	7	51	0	48	0	51	1.00
34308--34346	2	19.5	2	100	0	78	51	0	0	48	1.00
34346--34392	2	23.5	2	95	0	85	53	0	46	0	1.00
37340--37462	60	2.0	60	82	0	147	34	23	1	39	1.65
37353--37484	60	2.2	60	79	2	140	31	27	3	37	1.72
38635--38711	31	2.5	31	80	2	91	27	31	27	14	1.95
38588--38711	63	2.0	63	82	6	153	25	29	28	16	1.97
39581--39618	7	5.6	7	87	6	60	28	28	26	15	1.96
39580--39618	20	2.0	20	100	0	78	30	28	25	15	1.96
39607--39663	17	3.4	17	87	0	60	21	22	36	19	1.95
39658--39725	19	3.5	19	83	2	64	30	26	23	19	1.98
39674--39727	9	5.7	9	75	12	54	31	25	24	18	1.97
39676--39728	20	2.7	19	88	8	72	30	24	24	20	1.99
45920--46043	63	2.0	63	80	6	144	25	28	28	17	1.98
46913--46950	7	5.6	7	87	6	60	28	28	26	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46912--46950	20	2.0	20	100	0	78	30	28	25	15	1.96
46939--46979	17	2.4	17	87	0	55	19	24	36	19	1.95
46973--47012	19	2.2	18	86	4	53	25	32	27	15	1.95
46973--47012	9	4.3	9	84	6	53	25	32	27	15	1.95
53617--53741	23	5.3	23	74	6	108	32	23	20	24	1.98
53622--53741	47	2.6	47	92	4	190	31	23	21	23	1.98
53749--53965	103	2.1	103	97	0	407	36	23	13	25	1.92

Tables:   1

The End!