Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000292.1 Hibiscus syriacus cultivar Beakdansim tig00000537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68501

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--186
89
2.2
83
85
10
241
39
12
21
26
1.89
1--186
45
4.3
45
88
8
255
39
12
21
26
1.89
3044--3071
10
2.8
10
100
0
56
21
21
17
39
1.93
7550--7577
3
9.3
3
100
0
56
0
67
0
32
0.91
8615--8661
2
24.5
2
79
16
55
51
4
0
44
1.21
8619--8661
17
2.6
17
85
10
54
51
4
0
44
1.22
9362--9401
2
20.0
2
100
0
80
50
0
0
50
1.00
12067--12114
20
2.4
20
85
0
69
25
16
12
45
1.82
20404--20429
2
13.0
2
100
0
52
50
0
0
50
1.00
21989--22026
18
2.0
20
85
10
53
31
15
0
52
1.43
23104--23151
3
15.7
3
81
12
53
41
0
0
58
0.98
23102--23161
21
2.7
22
84
7
86
45
0
0
55
0.99
24245--24311
34
2.0
34
88
5
100
32
20
11
34
1.90
24523--24655
66
1.9
66
83
10
169
30
12
13
43
1.81
24808--24934
36
3.6
35
70
10
98
28
16
11
43
1.83
24665--24934
70
3.8
70
78
4
267
30
19
12
38
1.88
25209--25339
43
3.1
43
83
4
185
28
25
20
25
1.99
25132--25341
84
2.5
85
88
3
298
29
28
18
23
1.98
27210--27257
21
2.2
21
79
13
53
25
4
8
62
1.41
27225--27298
30
2.5
29
86
8
96
18
10
6
63
1.48
32731--32806
38
2.0
38
100
0
152
34
15
23
26
1.95
33730--33766
17
2.3
16
90
9
58
51
13
5
29
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34101--34474
196
1.9
196
85
3
511
39
4
7
49
1.50
35560--35792
78
3.0
78
90
1
369
50
13
24
11
1.74
37435--37515
23
3.6
21
78
14
74
72
1
3
22
1.07
37435--37527
23
4.2
23
72
11
70
72
1
4
22
1.09
39323--39443
33
3.5
34
80
10
122
33
7
17
41
1.77
39323--39454
34
3.9
33
72
18
101
33
9
17
40
1.81
39499--39569
36
2.0
36
94
0
124
43
11
18
26
1.83
39548--39614
21
3.1
21
93
2
107
40
10
19
29
1.85
39501--39577
36
2.1
36
90
0
118
42
12
19
24
1.86
39721--40047
116
2.8
115
90
1
512
24
18
22
34
1.96
40680--40768
3
31.3
3
86
10
134
69
0
0
30
0.89
40680--40768
20
4.4
20
91
5
135
69
0
0
30
0.89
40680--40760
17
4.9
17
86
10
116
70
0
0
29
0.88
42632--42672
17
2.4
17
91
4
64
46
4
2
46
1.37
45561--45640
41
2.0
41
100
0
160
28
6
22
42
1.78
51478--51507
15
2.0
15
93
0
51
33
23
20
23
1.97
54351--54400
23
2.1
24
92
7
84
32
26
20
22
1.98
58735--58787
23
2.2
24
86
6
72
33
20
15
30
1.93
65201--65230
15
2.0
15
93
0
51
33
23
20
23
1.97
65953--66003
23
2.2
23
82
0
66
25
27
19
27
1.99
66427--66472
21
2.1
23
92
8
78
30
8
8
52
1.62

Tables:   1

The End!