Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002921.1 Hibiscus syriacus cultivar Beakdansim tig00006038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74271

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4453--4493
22
1.9
22
85
14
59
63
0
7
29
1.21
4476--4517
17
2.4
18
92
4
68
71
0
7
21
1.09
4434--4517
35
2.4
35
74
16
86
66
0
7
26
1.17
5164--5220
25
2.3
25
81
3
71
59
14
1
24
1.44
15629--15673
23
2.0
23
100
0
90
17
13
15
53
1.73
19196--19235
21
1.9
21
84
0
53
37
10
15
37
1.80
19622--19676
3
18.3
3
100
0
110
32
0
0
67
0.91
19888--19932
22
2.0
22
91
0
72
24
11
31
33
1.90
21393--21502
24
4.8
24
93
3
165
25
26
24
23
2.00
21393--21502
47
2.4
46
86
7
161
25
26
24
23
2.00
22076--22136
18
3.0
22
80
17
62
22
18
14
44
1.86
26854--26951
3
31.7
3
79
10
99
38
1
0
60
1.04
27331--27367
16
2.2
17
95
4
67
78
5
16
0
0.93
28316--28356
22
2.0
21
86
13
59
46
0
0
53
1.00
28316--28356
21
1.9
22
90
5
66
46
0
0
53
1.00
28970--29021
20
2.6
21
76
11
56
26
7
0
65
1.20
33699--33743
6
7.5
6
87
7
65
82
0
17
0
0.68
33699--33743
23
2.0
23
90
0
72
82
0
17
0
0.68
35969--36233
83
3.2
83
93
1
442
27
13
21
37
1.91
38751--38805
22
2.5
22
96
0
101
34
14
14
36
1.87
39274--39976
113
6.2
113
88
2
907
37
14
18
29
1.91
40025--40371
166
2.1
166
99
0
687
35
18
17
28
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40533--40625
3
31.0
3
79
8
100
38
1
0
60
1.04
41776--41826
22
2.3
22
90
6
77
45
0
0
54
0.99
44835--44859
11
2.3
11
100
0
50
80
0
0
20
0.72
46147--46173
14
1.9
14
100
0
54
22
14
25
37
1.93
46715--46830
36
3.2
35
85
2
133
22
44
6
25
1.77
46752--46966
45
5.1
42
82
9
205
22
47
7
21
1.76
46790--46965
45
4.0
44
87
3
223
21
48
8
22
1.76
55537--55568
15
2.0
17
88
11
50
68
0
9
21
1.17
57334--57399
24
2.9
23
82
6
80
6
16
3
74
1.15
64512--64552
18
2.3
18
91
4
66
60
14
7
17
1.55
67521--67619
52
1.9
52
97
0
189
47
7
16
29
1.72
72646--72701
21
2.7
21
85
0
67
19
25
39
16
1.91

Tables:   1

The End!