Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002922.1 Hibiscus syriacus cultivar Beakdansim tig00006039_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65793

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5389--5418
5
5.8
5
96
4
51
56
0
0
43
0.99
6836--6886
26
2.0
26
88
0
75
17
17
29
35
1.93
6940--7478
106
5.0
106
91
1
783
23
17
24
34
1.96
18901--18930
15
1.9
15
93
6
51
73
3
0
23
0.98
25602--25663
24
2.7
23
71
14
65
51
11
4
32
1.59
25624--25695
39
1.9
36
83
8
90
50
13
4
31
1.61
26131--26196
16
4.1
17
76
9
66
39
1
0
59
1.07
26119--26185
32
2.1
32
83
5
82
35
2
0
61
1.12
26138--26196
15
3.8
15
76
14
57
40
1
0
57
1.09
27583--27619
17
2.2
17
90
0
56
40
0
8
51
1.32
34430--34508
32
2.5
31
81
2
95
32
15
13
37
1.87
34917--34955
13
3.0
13
84
0
51
43
12
23
20
1.86
34900--34938
20
2.0
20
84
0
51
41
17
23
17
1.91
35046--35079
12
3.0
12
91
8
54
35
23
17
23
1.95
42873--42931
23
2.5
22
76
15
57
50
1
3
44
1.28
45279--45304
3
8.7
3
100
0
52
65
0
0
34
0.93
45492--45831
131
2.6
131
83
5
441
24
17
33
24
1.96
45856--46179
67
4.8
68
82
5
388
39
14
18
28
1.89
45856--46179
137
2.4
133
82
6
391
39
14
18
28
1.89
55508--55918
207
2.0
206
95
0
743
27
28
14
29
1.95
59214--59288
25
3.0
25
74
20
68
53
1
0
45
1.08
59281--59411
42
3.2
41
75
8
133
51
0
2
45
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59161--59375
11
17.9
12
65
19
67
49
1
1
47
1.21
59527--59569
17
2.5
17
81
14
52
55
2
0
41
1.12
59604--59666
28
2.3
27
83
8
74
58
1
1
38
1.17
62976--63027
21
2.5
21
87
0
77
32
9
17
40
1.82
63460--64004
54
10.1
54
88
2
763
33
20
17
28
1.95

Tables:   1

The End!