genome.fa.s2925.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002925.1 Hibiscus syriacus cultivar Beakdansim tig00006044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65672

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5807--5857	20	2.5	20	96	0	93	19	33	25	21	1.97
11146--11208	23	2.9	23	77	15	71	23	34	23	17	1.96
23469--23545	37	2.1	37	83	9	95	46	1	3	48	1.28
23690--23727	20	1.9	20	88	0	58	21	26	10	42	1.85
24939--24976	12	3.2	12	78	14	51	36	21	15	26	1.93
24876--24989	24	4.8	24	84	5	135	40	18	16	24	1.91
25111--25209	47	2.1	47	100	0	198	43	14	17	25	1.86
26133--26173	18	2.3	18	86	0	55	26	17	2	53	1.56
27464--27507	15	3.1	14	82	17	56	20	25	40	13	1.89
27444--27510	8	8.5	8	76	21	63	20	23	38	16	1.92
27484--27515	13	2.5	13	100	0	64	12	25	46	15	1.81
27478--27563	18	4.9	18	78	17	92	15	20	45	18	1.85
27484--27581	31	3.2	31	95	1	171	14	21	45	18	1.84
27484--27576	13	6.5	13	71	23	62	15	21	45	18	1.85
29758--29875	24	4.9	24	84	6	141	40	18	16	23	1.91
29999--30097	47	2.1	47	100	0	198	43	14	17	25	1.86
31023--31063	18	2.3	18	86	0	55	26	17	2	53	1.56
32333--32400	8	8.5	8	80	18	72	22	23	38	16	1.93
32353--32384	15	2.1	15	100	0	64	25	25	37	12	1.91
32374--32405	13	2.5	13	100	0	64	12	25	46	15	1.81
32368--32472	18	6.2	18	72	23	95	15	20	45	18	1.85
32374--32472	31	3.2	31	97	0	180	14	21	46	18	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32374--32467	13	6.5	13	71	21	62	14	21	45	18	1.85
38391--38428	20	1.9	20	84	10	51	50	15	7	26	1.72
43572--43741	85	2.0	84	82	5	209	30	16	20	32	1.95
46337--46362	13	2.0	13	100	0	52	30	15	7	46	1.74
46777--46821	20	2.2	20	84	7	56	51	33	2	13	1.53
47326--47364	17	2.3	17	100	0	78	10	12	53	23	1.69
47473--47520	17	2.8	17	70	0	51	8	4	37	50	1.52
47511--47552	22	1.9	22	85	0	57	11	0	26	61	1.30
61343--61375	12	2.7	12	95	4	57	0	18	0	81	0.68
61929--61972	22	2.0	23	86	13	65	34	18	25	22	1.96
62258--62306	15	3.3	15	85	5	55	30	2	22	44	1.64
62614--62678	31	2.1	31	88	0	94	24	18	23	33	1.96
62984--63010	13	2.1	13	100	0	54	37	0	14	48	1.45

Tables:   1

The End!