genome.fa.s2926.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002926.1 Hibiscus syriacus cultivar Beakdansim tig00006047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54673

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7204--7333	20	6.4	20	79	7	111	33	23	17	24	1.96
7204--7333	61	2.1	61	84	0	179	33	23	17	24	1.96
7801--7859	20	3.0	20	87	0	73	16	18	22	42	1.89
7993--8047	25	2.2	24	78	15	58	20	9	18	52	1.71
9155--9198	18	2.5	18	85	3	63	27	43	15	13	1.85
9674--9719	20	2.3	20	88	0	65	36	26	21	15	1.93
9713--9793	18	4.7	18	76	17	91	44	20	20	13	1.86
9693--9793	32	2.8	38	74	18	108	41	21	22	13	1.89
9805--9895	14	5.9	14	74	20	83	10	17	23	48	1.79
9800--9911	33	3.4	33	97	1	208	11	18	22	47	1.81
9896--9951	20	2.8	19	86	7	76	16	25	23	35	1.94
9990--10048	25	2.4	25	77	5	66	25	5	18	50	1.67
11952--12005	14	3.5	14	77	22	63	48	20	20	11	1.80
12037--12102	18	3.6	18	73	15	71	18	18	22	40	1.91
12296--12345	20	2.5	20	86	0	82	22	18	20	40	1.92
12372--12423	20	2.5	21	87	3	70	21	23	17	38	1.93
12620--12653	12	2.9	12	86	4	52	17	41	5	35	1.74
13203--13256	24	2.2	24	90	0	81	22	16	20	40	1.91
13431--13455	12	2.1	12	100	0	50	72	0	28	0	0.86
15696--15843	33	4.3	36	77	14	145	40	20	22	15	1.91
15716--15841	33	3.8	33	87	5	193	42	19	23	15	1.89
15717--15847	66	2.0	65	95	1	235	41	19	22	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15849--15915	19	3.8	19	75	18	81	11	23	20	43	1.85
16022--16058	14	2.6	14	91	0	65	45	24	0	29	1.53
17398--17464	21	3.2	21	68	4	55	19	20	35	23	1.95
17398--17520	42	2.9	41	79	7	113	22	18	36	21	1.95
19611--19789	19	9.8	19	75	13	117	44	18	23	13	1.86
19636--19723	33	2.6	33	87	1	122	37	19	28	14	1.91
19706--19794	19	4.7	19	94	0	151	46	21	21	11	1.82
19790--19833	18	2.4	19	88	3	63	9	15	27	47	1.76
20376--20489	20	5.7	20	80	6	104	25	18	23	32	1.97
23044--23456	208	2.0	208	99	0	817	23	19	18	38	1.93
25354--25516	60	2.7	60	77	4	168	38	4	23	33	1.76
27386--27425	12	3.2	12	89	3	53	15	27	40	17	1.89
34697--34732	7	5.4	7	90	9	58	22	30	30	16	1.96
34701--34732	13	2.5	13	100	0	64	21	31	31	15	1.95
34745--34797	9	5.7	9	82	8	61	24	32	30	13	1.93
34744--34798	19	2.9	19	83	8	76	23	30	30	14	1.94
37713--37752	20	2.0	22	85	14	59	47	0	0	52	1.00
43686--43725	2	20.5	2	94	5	73	50	0	0	50	1.00
48878--48997	42	2.9	42	97	0	222	16	20	18	44	1.87
49183--49315	24	5.7	23	68	17	71	48	0	0	49	1.11
49177--49244	23	3.0	23	79	14	70	48	0	0	51	1.00
49202--49261	30	2.0	31	84	12	81	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49192--49271	33	2.6	30	77	18	85	48	1	0	50	1.08
49195--49300	28	3.8	28	78	15	78	48	0	0	50	1.13
49270--49325	20	2.8	21	78	13	64	44	0	1	53	1.11
49297--49336	19	2.0	20	90	4	64	42	2	0	55	1.13
49498--49567	20	3.5	20	94	0	122	35	12	10	41	1.77
49498--49576	40	2.0	40	89	0	122	35	13	8	41	1.76
49550--49631	15	5.5	15	82	2	103	35	17	7	40	1.77
49550--49631	30	2.8	30	88	1	121	35	17	7	40	1.77
50773--50800	2	14.0	2	100	0	56	50	0	0	50	1.00
51380--51428	2	24.5	2	100	0	98	51	0	0	48	1.00
52043--52084	17	2.4	17	88	4	66	26	9	0	64	1.24
52706--52763	27	2.1	27	90	0	89	27	24	10	37	1.88

Tables:   1

The End!