Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002928.1 Hibiscus syriacus cultivar Beakdansim tig00006050_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56701

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6082--6161
34
2.4
35
80
16
98
40
25
10
25
1.86
6897--6957
27
2.3
27
82
2
70
39
0
4
55
1.21
13400--13426
4
6.8
4
100
0
54
51
0
22
25
1.48
14187--14219
17
1.9
17
93
0
57
66
0
0
33
0.92
14238--14274
17
2.2
17
86
13
51
37
8
0
54
1.30
15796--15852
23
2.5
23
100
0
114
45
8
8
36
1.66
16027--16065
20
1.9
20
84
5
51
28
10
12
48
1.74
18497--18544
19
2.5
19
86
6
62
31
31
16
20
1.95
18554--18644
20
4.5
20
94
4
148
46
18
18
16
1.85
19061--19206
40
3.7
40
92
3
224
21
13
21
43
1.87
18994--19207
20
10.6
20
78
5
150
20
15
20
43
1.87
21022--21046
3
8.3
3
100
0
50
32
0
0
68
0.90
21227--21271
3
15.0
3
100
0
90
33
0
0
66
0.92
24049--24137
23
4.0
23
76
12
87
32
26
17
22
1.97
27055--27206
42
3.6
43
78
5
150
21
9
42
25
1.84
27049--27227
21
8.5
21
77
2
103
22
10
41
25
1.85
27339--27428
21
4.3
21
85
0
72
28
14
35
21
1.92
27349--27449
42
2.4
42
81
5
114
28
14
33
22
1.94
27349--27452
21
4.9
22
82
4
99
28
14
33
23
1.94
32030--32244
88
2.3
95
81
9
239
31
17
18
33
1.94
33335--34289
84
11.4
84
80
3
987
32
24
18
23
1.97
33335--34289
168
5.7
168
84
1
1132
32
24
18
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37207--37244
7
5.7
7
87
12
62
36
0
0
63
0.95
37207--37244
13
2.9
13
100
0
76
36
0
0
63
0.95
41427--41534
36
3.0
36
91
0
180
25
20
12
40
1.88
41419--41753
138
2.4
138
83
6
428
27
17
13
41
1.87
41739--41811
21
3.7
21
74
22
86
23
20
12
43
1.85
41749--41830
37
2.2
37
91
2
130
28
20
12
39
1.89
41695--41811
58
2.0
58
88
0
171
25
18
13
41
1.88
41872--42028
84
1.9
84
85
2
217
32
24
19
23
1.98
42596--42625
14
2.2
14
94
5
53
23
3
13
60
1.48
43819--43872
14
4.0
13
78
7
54
9
5
3
81
0.97
43808--43883
37
2.0
38
85
7
102
13
5
3
77
1.08
44695--44734
16
2.4
17
83
12
55
25
2
0
72
0.97
44930--45109
3
60.0
3
73
20
94
23
4
1
70
1.15
44941--45161
6
39.4
5
71
20
65
21
5
1
71
1.14
47800--47876
37
2.1
37
97
0
145
18
6
29
45
1.74
47899--48010
57
2.0
57
98
0
215
26
11
21
40
1.87
48657--48854
50
4.0
49
83
7
215
25
11
13
48
1.76
48656--48888
101
2.3
99
80
7
270
25
11
14
48
1.77
49108--49170
28
2.2
28
81
10
74
46
11
3
39
1.55
49809--49935
60
2.1
60
85
2
166
39
4
20
35
1.74
53956--54057
3
33.3
3
79
11
109
39
1
0
58
1.09

Tables:   1

The End!