genome.fa.s2929.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002929.1 Hibiscus syriacus cultivar Beakdansim tig00006053_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38423

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2072--2101	15	2.0	15	100	0	60	40	13	26	20	1.89
4069--4120	21	2.5	20	87	9	70	36	7	42	13	1.73
12731--12769	19	2.1	19	95	0	69	43	28	5	23	1.75
12934--13419	36	13.3	36	82	8	491	21	24	23	30	1.99
12881--13419	294	1.8	294	94	0	961	23	23	23	29	1.99
12967--13434	258	1.8	258	96	0	875	22	24	23	29	1.99
16652--16725	30	2.5	30	88	4	105	36	13	32	17	1.89
22431--22654	126	1.8	125	92	2	344	37	8	10	43	1.71
22552--22769	115	1.9	115	90	0	346	38	10	10	41	1.72
24783--24826	7	6.1	7	82	15	54	13	18	9	59	1.60
28982--29204	114	2.0	114	90	0	356	32	16	21	29	1.95
31278--31433	54	2.9	54	92	0	249	36	16	25	22	1.94
31798--31852	22	2.5	22	93	0	101	34	10	14	40	1.81
32532--32708	74	2.4	75	86	5	243	25	19	20	34	1.96
32729--33247	113	4.6	113	98	0	977	37	15	21	26	1.92
33187--33287	40	2.5	39	91	3	166	48	9	22	18	1.78
33074--33401	153	2.1	154	93	0	568	41	13	20	25	1.88
33228--33860	123	5.3	115	82	9	613	39	14	19	26	1.90
32961--33514	267	2.1	265	94	1	975	39	14	20	25	1.90
32848--33533	380	1.8	379	94	1	1232	38	14	20	26	1.91
33228--33772	114	4.6	113	85	7	553	39	14	19	26	1.90
33226--33653	227	1.8	230	84	8	582	39	14	19	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34585--34625	13	3.1	14	79	10	50	48	29	21	0	1.50
35768--35985	115	1.9	115	90	1	348	37	10	11	41	1.74

Tables:   1

The End!