genome.fa.s293.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000293.1 Hibiscus syriacus cultivar Beakdansim tig00000538_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  557133

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404564--404619	20	2.8	21	86	8	89	0	14	0	85	0.59
415247--415286	13	3.2	12	92	7	62	75	0	0	25	0.81
415247--415293	16	2.9	17	81	15	64	76	0	0	23	0.78
416940--416978	17	2.2	17	86	9	51	2	20	12	64	1.40
417170--417209	16	2.6	16	92	4	64	17	17	55	10	1.69
417290--417333	19	2.1	22	84	12	58	40	0	6	52	1.28
417326--417416	3	30.7	3	77	2	94	57	0	0	42	0.99
417302--417389	18	5.2	17	77	18	71	50	0	1	48	1.08
423268--423297	2	15.5	2	93	6	53	50	0	0	50	1.00
423939--423978	14	2.7	15	85	14	57	17	0	0	82	0.67
423937--423978	21	2.0	22	85	4	59	19	0	0	80	0.70
423954--423978	8	3.1	8	100	0	50	12	0	0	88	0.53
423966--424020	16	3.6	15	75	18	51	27	0	1	70	0.97
425008--425040	13	2.5	13	86	13	50	3	27	0	69	1.03
425002--425060	21	2.9	20	78	9	57	6	25	0	67	1.15
426564--426639	36	2.1	36	85	7	100	47	1	3	47	1.29
426787--426824	20	1.9	20	88	0	58	21	26	10	42	1.85
437162--437265	27	3.9	27	94	0	172	36	16	14	32	1.89
437150--437265	54	2.2	54	87	4	175	34	16	13	35	1.88
437271--437345	18	4.0	18	72	14	62	45	12	10	32	1.75
437250--437334	41	2.2	40	85	10	113	45	10	10	32	1.73
437250--437345	39	2.4	39	80	13	97	43	11	10	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438215--438280	30	2.2	30	100	0	132	45	6	6	42	1.53
444492--444538	20	2.3	20	89	10	78	55	10	17	17	1.69
444280--444752	181	2.6	182	88	1	644	42	14	16	27	1.86
447371--447407	18	2.1	18	89	0	56	32	5	10	51	1.60
447665--447751	39	2.2	39	89	0	138	49	19	12	18	1.79
448176--448240	23	2.8	23	88	0	94	33	4	21	40	1.74
448598--448670	23	3.2	23	82	0	83	32	4	21	41	1.72
449026--449098	23	3.2	23	88	0	101	34	4	21	39	1.73
447967--449395	428	3.3	429	97	0	2709	41	7	12	39	1.70
458916--458950	17	2.1	17	88	0	52	45	5	37	11	1.64
459439--459466	8	3.5	8	100	0	56	39	0	10	50	1.37
462975--463010	12	3.2	12	92	7	58	80	0	5	13	0.88
462953--463046	30	3.1	29	72	24	88	76	0	14	8	1.01
462991--463128	18	8.2	18	73	20	72	71	0	18	10	1.18
463320--463634	157	2.0	158	99	0	623	33	13	22	29	1.93
464566--464637	37	2.0	36	91	2	117	37	20	20	20	1.95
464711--465022	111	2.8	110	85	5	396	29	15	23	31	1.95
464703--465062	166	2.2	166	88	4	539	29	15	23	31	1.95
464652--465071	55	7.7	55	82	9	403	30	15	24	30	1.96
474794--474867	3	24.7	3	74	10	62	41	1	0	56	1.07
474795--474867	16	4.6	16	75	8	69	42	1	0	56	1.08
478329--478370	7	6.0	7	81	8	50	14	16	14	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478329--478370	15	3.0	14	83	10	50	14	16	14	54	1.71
478430--478488	26	2.3	26	84	0	82	22	11	8	57	1.61
480116--480155	2	20.0	2	100	0	80	50	0	0	50	1.00
482604--483077	83	5.7	83	94	1	743	27	13	21	37	1.91
484192--484352	74	2.2	74	83	5	193	32	17	21	28	1.96
485640--485694	22	2.5	22	96	0	101	34	14	14	36	1.87
486163--487418	113	11.2	113	86	3	1625	37	13	18	29	1.90
486163--487418	341	3.7	339	87	3	1769	37	13	18	29	1.90
487153--487358	100	2.1	100	89	1	315	38	11	20	29	1.88
487809--487929	3	39.7	3	84	6	154	37	1	0	61	1.06
488318--488354	7	5.6	7	84	9	51	89	0	10	0	0.49
488318--488352	13	2.8	13	91	8	56	88	0	11	0	0.51
488318--488353	12	2.8	14	84	16	51	88	0	11	0	0.50
499221--499247	3	9.0	3	100	0	54	33	0	0	66	0.92
499400--499467	21	3.2	21	93	0	118	30	26	20	22	1.98
499476--499528	21	2.5	21	90	0	79	22	20	28	28	1.99
502106--502196	34	2.6	34	89	5	130	54	6	9	28	1.58
503316--503452	35	4.0	35	78	9	131	21	27	20	30	1.98
505190--505428	117	2.0	121	92	6	409	28	11	4	55	1.55
506602--506652	26	2.0	26	84	7	68	13	11	7	66	1.43
516895--517627	105	7.0	105	94	3	1266	33	25	18	23	1.97
516895--517626	211	3.5	210	95	2	1273	33	25	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517685--517726	20	2.1	20	90	0	66	26	19	16	38	1.92
517939--517986	22	2.1	23	88	11	73	43	0	0	56	0.99
519220--519417	59	3.3	58	64	15	141	27	11	5	55	1.57
519206--519453	122	2.0	125	96	2	457	27	12	4	56	1.56
520266--520471	111	1.9	111	96	2	387	21	18	33	26	1.97
529925--529964	21	1.9	21	89	0	62	10	25	40	25	1.86
529946--530008	21	2.9	21	83	4	81	20	25	33	20	1.97
537833--537876	20	2.2	20	92	4	72	40	0	36	22	1.54
538195--538237	18	2.4	19	80	11	54	37	18	6	37	1.78
538240--538307	20	3.6	19	74	16	52	33	0	2	63	1.10
545201--545263	19	3.4	19	74	12	76	46	4	12	36	1.63
545201--545276	37	2.1	37	100	0	152	43	5	10	40	1.62
545220--545276	18	3.1	18	71	14	62	42	5	8	43	1.58
549775--549808	18	1.9	17	94	5	59	61	0	0	38	0.96
550967--551108	20	7.1	20	76	10	148	38	19	19	23	1.94
550967--551108	39	3.5	40	78	12	148	38	19	19	23	1.94
551078--551118	20	2.0	20	85	0	55	34	19	21	24	1.97
551960--552013	24	2.2	24	83	0	63	25	18	16	38	1.92
554432--554520	20	4.5	19	83	8	115	37	24	19	19	1.94
554492--554587	33	2.8	33	90	3	138	42	20	22	13	1.87
554525--554592	19	3.8	19	72	21	74	45	19	22	13	1.84
554693--554729	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556068--556149	21	3.9	21	75	0	83	21	20	35	21	1.96
556615--556699	34	2.5	33	76	3	89	48	21	18	11	1.80
556686--556751	20	3.5	20	79	12	84	34	25	21	18	1.96
556774--556878	54	1.9	54	92	0	174	18	20	20	40	1.91
556795--556878	20	4.5	20	77	17	99	20	20	21	38	1.94

Tables:   1   2

The End!