genome.fa.s2931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002931.1 Hibiscus syriacus cultivar Beakdansim tig00006056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74123

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4446--4503	30	1.9	30	96	0	107	32	6	18	41	1.78
10569--10966	36	11.0	36	74	14	171	47	3	5	43	1.44
10561--10968	38	11.2	37	76	14	286	47	3	5	43	1.43
10822--10890	33	2.2	30	82	12	84	43	4	4	47	1.42
12148--12223	3	25.3	3	72	15	50	25	2	3	68	1.20
14785--14972	99	1.9	99	94	0	331	35	18	16	30	1.93
16188--16505	84	3.8	83	83	5	385	33	24	16	24	1.96
17073--17139	22	3.0	23	86	4	82	28	28	23	19	1.98
17081--17139	22	2.6	22	91	2	91	25	30	25	18	1.98
17750--17897	65	2.3	65	92	3	244	16	26	28	29	1.97
23960--24018	22	2.6	23	91	5	102	23	30	27	18	1.98
24630--24779	66	2.3	65	92	3	246	16	27	28	28	1.97
25517--26163	161	4.0	160	84	3	710	33	22	18	26	1.96
25517--26163	79	8.0	80	83	3	701	33	22	18	26	1.96
26758--26824	31	2.2	31	86	2	91	44	2	7	44	1.47
26881--27125	37	6.7	37	82	8	245	44	4	6	44	1.49
26815--27125	38	8.6	37	77	14	267	44	5	6	44	1.52
27905--27966	24	2.5	25	84	7	74	19	4	3	72	1.17
30290--30736	227	2.0	227	93	3	767	45	7	7	39	1.61
30802--30847	20	2.3	19	89	10	74	54	10	17	17	1.70
30969--31015	20	2.4	19	79	10	58	55	8	17	19	1.67
32828--33499	184	3.7	184	96	0	1236	35	14	15	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36058--36121	23	2.8	23	87	0	92	35	6	20	37	1.78
36058--36130	23	3.2	23	82	7	85	34	5	20	39	1.76
36486--36549	23	2.8	23	87	0	92	35	6	20	37	1.78
36486--36558	23	3.2	23	82	7	85	34	5	20	39	1.76
36915--36979	23	2.8	23	90	0	94	35	7	18	38	1.80
37183--37219	18	2.1	18	89	0	56	32	5	10	51	1.60
38533--38558	5	5.2	5	100	0	52	80	0	0	19	0.71
38562--38726	37	4.4	38	77	6	158	45	4	4	44	1.46
39029--39404	189	2.0	189	93	1	646	33	22	12	31	1.92
40942--40979	20	2.0	20	89	5	60	63	2	0	34	1.09
41988--42091	36	2.9	36	84	8	106	47	3	0	49	1.20
41940--42107	37	4.5	37	82	5	171	45	4	1	47	1.34
42650--42676	11	2.5	11	100	0	54	37	22	7	33	1.82
47503--47562	31	1.9	31	89	0	93	16	45	18	20	1.86
47518--47556	18	2.2	18	90	0	60	15	48	20	15	1.81
50083--50201	24	5.0	24	89	4	168	26	14	19	39	1.90
55067--55210	72	2.0	72	86	2	200	25	11	20	42	1.86
55085--55207	24	5.1	24	90	3	176	26	13	20	40	1.88
55318--55412	43	2.2	43	90	3	147	15	8	35	40	1.78
59311--59354	22	2.0	22	100	0	88	45	22	18	13	1.84
67934--67960	2	13.5	2	100	0	54	51	0	0	48	1.00
70562--70726	60	2.8	60	73	9	156	31	22	6	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73558--73604	19	2.3	20	82	10	69	0	21	8	70	1.14
74039--74063	11	2.3	11	100	0	50	48	0	0	52	1.00
74059--74123	3	22.0	3	87	3	96	61	0	4	33	1.16

Tables:   1

The End!