genome.fa.s2932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002932.1 Hibiscus syriacus cultivar Beakdansim tig00006058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  153390

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232--1262	14	2.1	15	94	5	55	70	9	0	19	1.14
6643--6679	15	2.4	16	82	13	51	37	8	35	18	1.81
7615--7665	21	2.5	20	80	3	66	31	25	19	23	1.98
7709--7801	42	2.2	41	81	5	107	37	26	13	21	1.91
11413--11442	9	3.3	9	100	0	60	13	33	10	43	1.77
14424--14531	31	3.5	31	88	0	153	20	7	5	66	1.37
14728--14773	20	2.2	21	85	11	60	47	6	0	45	1.28
14728--14785	22	2.6	23	73	18	59	50	5	1	43	1.35
14999--15063	34	1.9	34	93	6	114	36	24	20	18	1.94
17444--17518	30	2.5	30	86	0	105	33	20	24	22	1.97
19518--19893	44	8.6	44	85	2	474	33	23	25	16	1.96
19518--19893	87	4.3	86	85	4	477	33	23	25	16	1.96
24723--24767	21	2.1	21	100	0	90	40	15	8	35	1.79
25811--26021	2	106.0	2	99	0	415	49	0	50	0	1.00
28208--28244	2	18.5	2	100	0	74	48	0	0	51	1.00
28568--28601	7	4.9	7	89	10	52	52	0	0	47	1.00
28568--28599	13	2.6	13	90	9	50	53	0	0	46	1.00
29510--29623	20	5.7	20	81	6	104	32	25	17	24	1.97
30142--30188	19	2.5	19	89	0	67	53	25	12	8	1.67
30198--30285	33	2.6	33	96	1	158	11	27	22	38	1.88
30253--30310	20	2.9	20	80	10	64	13	24	18	43	1.87
32444--32510	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33862--33897	14	2.6	14	95	0	63	30	0	25	44	1.54
34022--34078	14	3.7	14	72	20	51	43	21	26	8	1.81
34004--34093	33	2.7	33	92	0	144	43	20	23	13	1.86
34004--34064	19	3.5	19	74	21	69	44	21	22	11	1.84
34089--34219	19	7.7	19	67	23	103	14	23	19	42	1.88
34093--34219	33	3.9	32	87	8	193	14	23	18	42	1.88
34086--34218	66	2.0	66	97	0	248	16	23	18	41	1.90
36510--36534	12	2.1	12	100	0	50	0	28	0	72	0.86
36709--36762	24	2.2	24	93	0	90	42	20	14	22	1.88
36709--36776	24	2.8	24	86	0	64	39	20	14	25	1.91
37501--37614	20	5.7	20	84	6	140	22	19	27	30	1.98
37481--37618	41	3.4	41	83	6	172	21	18	25	34	1.96
37481--37636	41	3.8	41	81	3	136	21	19	25	33	1.97
37604--37655	20	2.5	21	84	3	70	19	23	19	38	1.93
43831--43920	3	30.0	3	81	12	78	37	2	0	60	1.09
43838--43919	10	8.1	10	69	17	62	37	1	0	60	1.04
45803--45838	17	2.1	18	89	5	56	55	0	0	44	0.99
47880--47912	13	2.3	15	90	10	52	15	18	9	57	1.63
47880--47912	7	4.7	7	85	14	50	15	18	9	57	1.63
52279--52502	118	1.9	117	80	11	262	34	15	21	28	1.94
52279--52544	118	2.3	117	79	9	258	35	15	21	27	1.94
54687--54718	17	1.9	16	93	6	55	6	18	15	59	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56024--56070	20	2.3	20	88	0	67	8	38	12	40	1.74
66239--66272	18	1.9	17	88	5	50	14	8	29	47	1.75
67448--67571	57	2.2	58	81	9	150	39	1	2	56	1.22
67451--67571	30	4.3	28	73	19	108	38	1	2	57	1.22
67603--67682	27	3.0	27	80	10	78	50	0	7	42	1.30
69806--69841	14	2.6	14	95	0	63	50	22	5	22	1.70
71067--71186	26	4.4	26	86	10	168	36	20	8	35	1.82
71084--71172	31	3.0	31	90	7	134	30	23	8	37	1.86
76616--76688	31	2.4	31	81	4	78	45	6	19	28	1.76
77553--77591	21	1.9	21	94	5	71	46	0	20	33	1.51
78103--78175	6	11.8	6	89	5	83	20	9	2	67	1.32
78123--78204	3	27.7	3	82	2	85	25	9	0	64	1.24
78426--78469	22	2.0	22	82	8	54	15	38	11	34	1.84
83652--83698	18	2.7	18	96	3	87	53	14	23	8	1.69
85568--85630	29	2.1	31	82	5	76	44	6	15	33	1.72
93397--93955	81	6.9	81	89	0	794	28	20	13	37	1.90
94041--94205	53	3.1	53	83	0	186	33	16	16	32	1.92
98010--98829	81	10.1	80	85	5	1026	28	21	12	37	1.90
98029--98829	243	3.3	240	88	2	1147	28	21	12	37	1.90
98915--99080	54	3.1	54	92	2	255	36	18	15	30	1.92
102975--105874	81	35.9	81	85	0	3799	28	20	13	37	1.90
105959--106125	54	3.1	52	86	5	210	34	19	16	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111655--111708	2	27.0	2	100	0	108	50	0	0	50	1.00
111864--111919	27	2.1	27	89	0	85	46	3	14	35	1.62
119684--120046	178	2.0	181	98	1	705	33	16	18	31	1.93
122845--122896	21	2.5	21	80	0	59	25	15	32	26	1.95
122913--122963	20	2.5	19	81	12	57	29	19	23	27	1.98
123395--123472	2	41.0	2	82	10	92	50	0	0	50	1.00
123461--123508	18	2.6	18	73	3	51	43	4	6	45	1.48
123589--123623	14	2.5	14	90	0	52	17	2	2	77	1.02
127567--127760	64	3.0	64	100	0	388	29	14	22	34	1.93
127613--127713	31	3.2	31	65	15	89	28	14	21	34	1.93
127625--127723	31	3.2	29	65	15	81	31	15	19	34	1.92
127580--127746	33	5.2	33	64	16	116	30	13	21	34	1.92
131859--131896	14	2.9	14	88	7	53	36	18	21	23	1.95
132796--132863	18	3.6	18	81	14	82	32	32	17	17	1.94
132805--132847	22	2.0	22	95	0	77	32	30	13	23	1.93
134083--134139	3	19.0	3	75	13	55	59	0	40	0	0.97
134083--134139	16	3.6	16	97	0	105	59	0	40	0	0.97
149426--149468	22	2.0	22	85	0	59	48	4	2	44	1.36
149498--149560	25	2.6	25	84	2	92	50	1	6	41	1.37
149416--149560	25	5.8	24	69	16	91	47	2	6	43	1.42
149533--149572	18	2.2	18	90	0	62	47	2	5	45	1.38
149550--149608	30	2.0	29	93	3	100	49	0	3	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149499--149618	51	2.5	47	77	16	113	47	0	7	44	1.37
149711--149743	14	2.3	15	94	5	59	18	0	3	78	0.87
152429--152458	15	2.0	15	100	0	60	46	13	6	33	1.69

Tables:   1

The End!