genome.fa.s2933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002933.1 Hibiscus syriacus cultivar Beakdansim tig00006060_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163544

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2196--2399	101	2.0	100	96	3	374	26	18	13	42	1.87
2389--2445	3	19.0	3	82	7	71	33	0	1	64	1.04
2383--2430	24	2.0	23	92	4	78	27	0	2	70	0.98
2584--2622	17	2.3	17	86	8	53	10	53	20	15	1.70
2850--2912	27	2.3	28	91	2	101	53	12	31	1	1.48
11853--11902	9	5.3	9	83	9	64	12	28	32	28	1.92
11853--11902	19	2.7	18	84	9	64	12	28	32	28	1.92
11898--11936	17	2.3	17	100	0	78	17	46	23	12	1.83
11926--11969	7	6.4	7	84	5	63	18	27	27	27	1.98
16824--16894	35	2.0	35	86	0	97	54	1	19	23	1.52
21456--21534	39	2.1	38	81	11	90	41	3	20	34	1.70
22879--22913	3	12.0	3	93	6	63	68	0	0	31	0.90
26316--26379	24	2.6	25	80	9	69	68	3	3	25	1.18
26352--26391	21	2.0	21	85	5	55	72	5	2	20	1.15
26501--26552	22	2.5	21	76	14	54	57	7	7	26	1.54
28379--28559	48	3.8	48	84	4	240	34	16	20	28	1.94
28148--28502	161	2.2	163	83	6	436	32	14	23	29	1.94
28379--28553	96	1.8	96	90	2	280	35	16	20	28	1.94
28558--28849	37	7.9	37	94	0	494	25	16	19	39	1.91
28892--29595	150	4.7	150	89	3	1066	34	16	13	35	1.88
29262--29563	143	2.1	141	92	4	509	34	16	14	35	1.89
28892--29595	292	2.4	296	90	2	1085	34	16	13	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36914--36972	2	29.5	2	100	0	118	50	0	0	49	1.00
38200--38276	32	2.4	32	97	0	145	33	14	16	35	1.89
39469--39524	29	1.9	29	96	0	103	32	21	12	33	1.91
42418--42481	23	2.8	23	90	0	101	32	25	26	15	1.95
49268--49336	23	3.0	23	71	0	66	31	21	24	21	1.98
50870--50928	19	2.9	20	70	14	50	30	27	15	27	1.96
50880--50951	20	3.6	20	72	7	65	31	26	13	27	1.94
50970--51020	21	2.4	21	83	0	57	37	25	17	19	1.94
51081--51127	21	2.2	21	85	7	60	23	29	12	34	1.92
52108--52317	76	2.8	77	86	2	273	24	31	23	20	1.98
58053--58135	21	3.9	21	74	10	60	24	37	24	14	1.92
60339--60410	30	2.3	30	95	4	126	41	2	18	37	1.65
60717--60924	75	2.8	77	85	5	273	24	32	23	20	1.98
62018--62134	60	2.0	60	82	3	146	37	17	3	41	1.66
65850--65875	3	8.7	3	100	0	52	34	0	0	65	0.93
69995--70028	11	3.1	11	82	0	50	26	26	8	38	1.85
73545--73582	20	1.9	20	88	0	58	10	26	36	26	1.89
73565--73625	20	2.9	21	85	7	70	16	26	36	21	1.94
81867--83154	134	9.6	134	81	3	1290	31	21	17	29	1.96
83281--83309	3	9.7	3	100	0	58	65	0	0	34	0.93
83287--83324	13	3.0	13	88	3	51	55	2	0	42	1.14
83281--83322	18	2.3	19	87	4	59	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85866--85910	23	2.0	23	86	0	63	33	26	22	17	1.96
86699--86762	33	1.9	34	81	9	78	42	18	1	37	1.60
87631--87689	23	2.6	23	91	0	100	33	28	22	15	1.94
88468--88521	2	26.5	2	88	3	81	50	1	1	46	1.23
89475--89800	162	2.0	163	99	0	645	32	23	3	40	1.72
98778--99335	276	2.0	275	91	2	913	36	14	10	37	1.82
100688--101038	141	2.5	140	89	2	544	30	13	15	40	1.86
103591--103639	20	2.6	19	83	6	64	30	20	22	26	1.98
103690--103741	22	2.6	19	72	18	52	26	13	28	30	1.94
111056--111127	23	3.3	22	75	13	85	27	22	23	26	1.99
118194--118231	20	1.9	20	94	0	67	44	10	23	21	1.83
118194--118237	20	2.3	19	88	7	63	45	9	25	20	1.80
122659--122746	26	3.4	26	98	0	167	40	7	25	26	1.82
125376--125671	41	7.2	41	70	14	144	29	16	19	34	1.94
125357--125711	164	2.2	166	87	2	500	29	17	18	34	1.94
125357--125754	82	4.8	83	80	4	385	30	16	18	34	1.93
141875--141900	11	2.4	11	100	0	52	7	46	0	46	1.31
153147--153171	2	12.5	2	100	0	50	52	0	0	48	1.00
155037--155075	16	2.4	16	86	0	60	48	25	0	25	1.51
155498--155628	37	3.6	37	87	6	178	28	21	12	37	1.90
155476--155622	37	4.0	36	81	9	154	29	21	12	35	1.91
155773--155960	100	1.9	99	83	6	247	32	17	10	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155965--156339	67	5.6	67	85	4	429	30	17	12	40	1.87
156011--156330	137	2.4	135	88	4	468	29	16	13	41	1.86
156343--156852	131	3.9	131	81	4	490	29	32	14	23	1.94
157016--157060	23	2.1	22	84	12	58	40	6	0	53	1.27
157825--157870	24	1.9	25	86	8	69	71	0	6	21	1.08

Tables:   1

The End!