Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002934.1 Hibiscus syriacus cultivar Beakdansim tig00006062_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77625

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1846--1878
12
2.6
13
90
4
50
30
18
6
45
1.73
19637--19676
21
1.9
21
94
0
71
15
30
37
17
1.90
20658--20775
21
5.7
21
69
6
71
35
25
16
22
1.95
20762--20935
20
8.6
20
83
5
217
34
26
19
19
1.96
21261--21304
10
4.5
10
88
5
72
65
6
11
15
1.44
21268--21308
19
2.2
19
100
0
82
68
4
9
17
1.35
22248--22283
14
2.6
14
90
0
54
30
0
22
47
1.52
22390--22487
19
5.4
19
84
13
143
45
17
21
15
1.84
22390--22505
53
2.2
53
96
1
216
43
18
23
14
1.86
22534--22698
19
9.4
19
76
19
189
13
21
18
46
1.83
22512--22670
52
3.0
52
99
0
309
13
23
16
45
1.83
22512--22712
33
5.9
33
75
15
212
13
22
18
45
1.84
25193--25239
24
2.0
24
87
8
69
38
21
14
25
1.92
25922--26151
20
11.5
20
87
1
237
19
19
24
36
1.94
26138--26220
21
4.0
21
73
6
78
25
16
24
33
1.96
26118--26216
42
2.4
43
77
11
100
21
18
23
37
1.94
26917--26964
19
2.5
20
75
3
53
29
10
8
52
1.65
28242--28301
22
2.8
22
75
12
63
15
25
38
21
1.92
28242--28301
20
2.8
22
80
12
63
15
25
38
21
1.92
30804--30839
18
1.9
19
88
5
56
69
2
2
25
1.15
31711--31756
3
15.0
3
90
4
74
69
0
30
0
0.89
34400--34425
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35746--35807
22
2.8
22
97
0
115
48
0
3
48
1.17
53505--53595
23
4.0
23
70
8
69
20
24
23
31
1.98
63085--63155
35
2.0
35
97
0
133
23
11
14
50
1.74
66217--66241
4
6.2
4
100
0
50
24
28
24
24
2.00
70589--70676
31
3.3
26
75
20
76
46
0
0
53
1.00
70588--70656
26
3.0
22
77
22
70
46
0
0
53
1.00
70606--70657
25
2.0
26
85
7
70
50
0
0
50
1.00
72644--72789
71
2.1
71
88
2
213
28
17
21
32
1.96
72831--72911
37
2.2
37
89
4
121
33
4
17
44
1.70
77015--77138
55
2.3
55
92
4
207
43
12
21
22
1.85

Tables:   1

The End!