Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002935.1 Hibiscus syriacus cultivar Beakdansim tig00006063_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76387
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:5945 original size:81 final size:80
Alignment explanation
Indices: 5835--5995 Score: 304
Period size: 81 Copynumber: 2.0 Consensus size: 80
5825 GTTGAGGCTT
5835 TAAGAGTGGCAAACAAAATTGAAAATTAAGATCGATGAGCACGTACAAACCTAGATTGAAAATTG
1 TAAGAGTGGCAAACAAAATTGAAAATTAAGATCGATGAGCACGTACAAACCTAGATTGAAAATTG
5900 ATAAGGGTTTTATAA
66 ATAAGGGTTTTATAA
*
5915 TAAGAGTGGCAAAACAAAATTGAAAATTAAGATCGATGAGCACGTACGAACCTAGATTGAAAATT
1 TAAGAGTGGC-AAACAAAATTGAAAATTAAGATCGATGAGCACGTACAAACCTAGATTGAAAATT
5980 GATAAGGGTTTTATAA
65 GATAAGGGTTTTATAA
5996 AGCACATTGA
Statistics
Matches: 79, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
80 10 0.13
81 69 0.87
ACGTcount: A:0.45, C:0.10, G:0.20, T:0.25
Consensus pattern (80 bp):
TAAGAGTGGCAAACAAAATTGAAAATTAAGATCGATGAGCACGTACAAACCTAGATTGAAAATTG
ATAAGGGTTTTATAA
Found at i:7346 original size:6 final size:6
Alignment explanation
Indices: 7335--7373 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
7325 GTAACTCCCA
7335 AATCTG AATCTG AATCTG --TCTG AATCTG AATCTG AATCT
1 AATCTG AATCTG AATCTG AATCTG AATCTG AATCTG AATCT
7374 CACGTACTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
6 27 0.87
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (6 bp):
AATCTG
Found at i:7358 original size:16 final size:16
Alignment explanation
Indices: 7337--7368 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7327 AACTCCCAAA
7337 TCTGAATCTGAATCTG
1 TCTGAATCTGAATCTG
7353 TCTGAATCTGAATCTG
1 TCTGAATCTGAATCTG
7369 AATCTCACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (16 bp):
TCTGAATCTGAATCTG
Found at i:9908 original size:14 final size:14
Alignment explanation
Indices: 9891--9929 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
9881 TCGGTTATGC
9891 TCGTTTATGCTT-GT
1 TCGTTTATG-TTCGT
9905 TCGTTTATGTTCGT
1 TCGTTTATGTTCGT
*
9919 TCATTTATGTT
1 TCGTTTATGTT
9930 TAACCCAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 2 0.09
14 21 0.91
ACGTcount: A:0.10, C:0.13, G:0.18, T:0.59
Consensus pattern (14 bp):
TCGTTTATGTTCGT
Found at i:9918 original size:24 final size:24
Alignment explanation
Indices: 9854--9919 Score: 96
Period size: 24 Copynumber: 2.8 Consensus size: 24
9844 CGTTCGTGAA
*
9854 CGTTCGGTTATGTTCATTTATGCT
1 CGTTCGGTTATGTTCGTTTATGCT
*
9878 CGTTCGGTTATGCTCGTTTATGCT
1 CGTTCGGTTATGTTCGTTTATGCT
* *
9902 TGTTCGTTTATGTTCGTT
1 CGTTCGGTTATGTTCGTT
9920 CATTTATGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.09, C:0.17, G:0.23, T:0.52
Consensus pattern (24 bp):
CGTTCGGTTATGTTCGTTTATGCT
Found at i:11035 original size:16 final size:16
Alignment explanation
Indices: 11010--11068 Score: 100
Period size: 16 Copynumber: 3.7 Consensus size: 16
11000 CCAACGTTTA
*
11010 TGTTCGTTTATGGTCG
1 TGTTCGTTTATGTTCG
*
11026 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
11042 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
11058 TGTTCGTTTAT
1 TGTTCGTTTAT
11069 TTATTAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.08, C:0.12, G:0.24, T:0.56
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:11160 original size:15 final size:14
Alignment explanation
Indices: 11131--11174 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 14
11121 ATAAATTTTT
*
11131 TGTTTGTTTGTTTA
1 TGTTCGTTTGTTTA
11145 TGTTCGTTTCGTTTA
1 TGTTCGTTT-GTTTA
*
11160 TGTTCGTTTATTTA
1 TGTTCGTTTGTTTA
11174 T
1 T
11175 TAAATGAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 13 0.48
15 14 0.52
ACGTcount: A:0.09, C:0.07, G:0.18, T:0.66
Consensus pattern (14 bp):
TGTTCGTTTGTTTA
Found at i:14189 original size:16 final size:16
Alignment explanation
Indices: 14168--14200 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
14158 TCATGGCCTT
14168 AAACAGAGATGAATAG
1 AAACAGAGATGAATAG
14184 AAACAGAGATGAATAG
1 AAACAGAGATGAATAG
14200 A
1 A
14201 TGGGTAGGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.24, T:0.12
Consensus pattern (16 bp):
AAACAGAGATGAATAG
Found at i:14539 original size:17 final size:17
Alignment explanation
Indices: 14517--14549 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14507 TCATATCCCA
14517 TGTCTGCTTCCCTTTCC
1 TGTCTGCTTCCCTTTCC
*
14534 TGTCTGCTTCCTTTTC
1 TGTCTGCTTCCCTTTC
14550 TCGTGCAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.36, G:0.12, T:0.52
Consensus pattern (17 bp):
TGTCTGCTTCCCTTTCC
Found at i:15729 original size:32 final size:31
Alignment explanation
Indices: 15692--15786 Score: 96
Period size: 32 Copynumber: 3.2 Consensus size: 31
15682 ATAATGTACA
* *
15692 TCATCTTCAACCTCTTACATAGCACACTCCTT
1 TCATCTTC-ACCTCTTACACAACACACTCCTT
15724 TCA---T---CTCTTACACAACACACTCCTT
1 TCATCTTCACCTCTTACACAACACACTCCTT
15749 TCATCTTCAGTCC-CTTACACAACACACTCCTT
1 TCATCTTCA--CCTCTTACACAACACACTCCTT
15781 TCATCT
1 TCATCT
15787 AACCGAATAC
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
25 22 0.42
28 1 0.02
29 1 0.02
32 28 0.53
33 1 0.02
ACGTcount: A:0.25, C:0.39, G:0.02, T:0.34
Consensus pattern (31 bp):
TCATCTTCACCTCTTACACAACACACTCCTT
Found at i:15732 original size:25 final size:25
Alignment explanation
Indices: 15703--15786 Score: 87
Period size: 25 Copynumber: 3.1 Consensus size: 25
15693 CATCTTCAAC
* *
15703 CTCTTACATAGCACACTCCTTTCAT
1 CTCTTACACAACACACTCCTTTCAT
15728 CTCTTACACAACACACTCCTTTCATCTT
1 CTCTTACACAACACACTCCTTTCA---T
15756 CAGTCCCTTACACAACACACTCCTTTCAT
1 C--T--CTTACACAACACACTCCTTTCAT
15785 CT
1 CT
15787 AACCGAATAC
Statistics
Matches: 50, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
25 22 0.44
27 1 0.02
28 2 0.04
29 2 0.04
30 1 0.02
32 22 0.44
ACGTcount: A:0.25, C:0.39, G:0.02, T:0.33
Consensus pattern (25 bp):
CTCTTACACAACACACTCCTTTCAT
Found at i:22366 original size:21 final size:21
Alignment explanation
Indices: 22327--22367 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
22317 CCATCACTAT
*
22327 GCTTACATGAAAATTCACAAA
1 GCTTACATGAAAATACACAAA
**
22348 GCTTACATGGCAATACACAA
1 GCTTACATGAAAATACACAA
22368 TATTGATGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.12, T:0.22
Consensus pattern (21 bp):
GCTTACATGAAAATACACAAA
Found at i:23744 original size:73 final size:71
Alignment explanation
Indices: 23660--23967 Score: 315
Period size: 73 Copynumber: 4.2 Consensus size: 71
23650 GTCCAGGGTT
* *
23660 TATATATTATATAGTTTTTATAGAACGATTTTTGAAAACATATAATATATA-CTTT-AAAATCGA
1 TATATATTATATAGTTTTTA-A-AACGATTTTTGAAAATATATAATATATAGTTTTGAAAA-C-A
23723 TTTTTGAAAA
62 TTTTTGAAAA
* * * *
23733 TATATATTATATAGTTTTGAAAATGGTTTTCGAAAATATATATATTATATAGTTTTG-AAA-ATT
1 TATATATTATATAGTTTTTAAAACGATTTTTGAAAATATATA-A-TATATAGTTTTGAAAACATT
23796 TTTGGAAACA
64 TTT-GAAA-A
23806 TATATATAATATATAGTTTTTGAAAAC-ATTTTTGAATATATATATAATATATAGTTTTTGAAAA
1 TATATAT--TATATAGTTTTT-AAAACGATTTTTGAA-A-ATATATAATATATAG-TTTTGAAAA
23870 CATTTTTGAAAA
60 CATTTTTGAAAA
* ** *
23882 TGTATATAATATATAG-TTTTAAAAATATTTTTGAAAATATATATTATATAGTTTT-AAAACAAT
1 --TATATATTATATAGTTTTTAAAACGATTTTTGAAAATATATAATATATAGTTTTGAAAAC-AT
23945 TTTTGAAAA
63 TTTTGAAAA
23954 TATATATATATATA
1 TATATAT-TATATA
23968 TATTATATGG
Statistics
Matches: 202, Mismatches: 14, Indels: 40
0.79 0.05 0.16
Matches are distributed among these distances:
70 6 0.03
71 34 0.17
72 21 0.10
73 47 0.23
74 11 0.05
75 38 0.19
76 19 0.09
77 14 0.07
78 12 0.06
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.45
Consensus pattern (71 bp):
TATATATTATATAGTTTTTAAAACGATTTTTGAAAATATATAATATATAGTTTTGAAAACATTTT
TGAAAA
Found at i:23781 original size:38 final size:38
Alignment explanation
Indices: 23660--23969 Score: 306
Period size: 38 Copynumber: 8.3 Consensus size: 38
23650 GTCCAGGGTT
* * *
23660 TATATATTATATAGTTTTTATAGAACGATTTTTGAAAACA
1 TATATATTATATAGTTTTGA-A-AATGATTTTTGAAAATA
*
23700 TATA-A-TATATA-CTTT-AAAATCGATTTTTG-AAA-A
1 TATATATTATATAGTTTTGAAAAT-GATTTTTGAAAATA
* *
23733 TATATATTATATAGTTTTGAAAATGGTTTTCGAAAATA
1 TATATATTATATAGTTTTGAAAATGATTTTTGAAAATA
*
23771 TATATATTATATAGTTTTGAAAAT--TTTTGGAAACATA
1 TATATATTATATAGTTTTGAAAATGATTTTTGAAA-ATA
* * *
23808 TATATAATATATAGTTTTTGAAAA-CATTTTTGAATATA
1 TATATATTATATAG-TTTTGAAAATGATTTTTGAAAATA
* * *
23846 TATATAATATATAGTTTTTGAAAA-CATTTTTGAAAATG
1 TATATATTATATAG-TTTTGAAAATGATTTTTGAAAATA
* *
23884 TATATAATATATAGTTTTAAAAAT-ATTTTTG-AAA-A
1 TATATATTATATAGTTTTGAAAATGATTTTTGAAAATA
**
23919 TATATATTATATAGTTTT-AAAACAATTTTTGAAAATA
1 TATATATTATATAGTTTTGAAAATGATTTTTGAAAATA
23956 TATATATATATATA
1 TATATAT-TATATA
23970 TTATATGGTT
Statistics
Matches: 239, Mismatches: 15, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
33 5 0.02
34 10 0.04
35 39 0.16
36 24 0.10
37 50 0.21
38 99 0.41
39 8 0.03
40 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.45
Consensus pattern (38 bp):
TATATATTATATAGTTTTGAAAATGATTTTTGAAAATA
Found at i:23968 original size:73 final size:75
Alignment explanation
Indices: 23660--23969 Score: 306
Period size: 75 Copynumber: 4.2 Consensus size: 75
23650 GTCCAGGGTT
** * * *
23660 TATATAT-TATATAGTTTTTATAGAACGATTTTTGAAA-ACATATAATATATA-CTTTAAAATCG
1 TATATATATATATAGTTTTTA-A-AAATATTTTTGAAATATATATAATATATAGTTTTAAAA-CA
23722 ATTTTTG-AAA-A
63 ATTTTTGAAAATA
* * * * *
23733 TATATAT-TATATAG-TTTTGAAAATGGTTTTCGAAAATATATATATTATATAGTTTT-GAA-AA
1 TATATATATATATAGTTTTTAAAAAT-ATTTTTG-AAATATATATAATATATAGTTTTAAAACAA
23794 TTTTTGGAAACATA
64 TTTTT-GAAA-ATA
* *
23808 TATATA-ATATATAGTTTTTGAAAACATTTTTGAATATATATATAATATATAGTTTTTGAAAAC-
1 TATATATATATATAGTTTTTAAAAATATTTTTGAA-ATATATATAATATATAG-TTTT-AAAACA
*
23871 ATTTTTGAAAATG
63 ATTTTTGAAAATA
*
23884 TATATA-ATATATAG-TTTTAAAAATATTTTTGAAA-ATATATATTATATAGTTTTAAAACAATT
1 TATATATATATATAGTTTTTAAAAATATTTTTGAAATATATATAATATATAGTTTTAAAACAATT
23946 TTTGAAAATA
66 TTTGAAAATA
23956 TATATATATATATA
1 TATATATATATATA
23970 TTATATGGTT
Statistics
Matches: 200, Mismatches: 20, Indels: 34
0.79 0.08 0.13
Matches are distributed among these distances:
70 2 0.01
71 17 0.09
72 30 0.15
73 51 0.25
74 7 0.04
75 52 0.26
76 29 0.14
77 4 0.02
78 8 0.04
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.45
Consensus pattern (75 bp):
TATATATATATATAGTTTTTAAAAATATTTTTGAAATATATATAATATATAGTTTTAAAACAATT
TTTGAAAATA
Found at i:23975 original size:45 final size:45
Alignment explanation
Indices: 23917--24014 Score: 146
Period size: 45 Copynumber: 2.2 Consensus size: 45
23907 TATTTTTGAA
*
23917 AATATATATTATATAGTTTT-AAAACAATTTTTGAAAA-TATATAT
1 AATATATATTATATAGTTTTGAAAACAATTTTT-AAAAGCATATAT
*
23961 ATATATATATTATATGGTTTTGAAAACAATTTTTAAAAGCATATAT
1 A-ATATATATTATATAGTTTTGAAAACAATTTTTAAAAGCATATAT
24007 AATATATA
1 AATATATA
24015 GTTTTAAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
44 1 0.02
45 29 0.59
46 19 0.39
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (45 bp):
AATATATATTATATAGTTTTGAAAACAATTTTTAAAAGCATATAT
Found at i:24031 original size:38 final size:37
Alignment explanation
Indices: 23961--24032 Score: 81
Period size: 38 Copynumber: 1.9 Consensus size: 37
23951 AAATATATAT
* * **
23961 ATATATATATTATATGGTTTTGAAAACAATTTTTAAA
1 ATATATATAATATATAGTTTTGAAAATGATTTTTAAA
* *
23998 AGCATATATAATATATAGTTTTAAAAATGATTTTT
1 A-TATATATAATATATAGTTTTGAAAATGATTTTT
24033 TATATATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
37 1 0.04
38 27 0.96
ACGTcount: A:0.43, C:0.03, G:0.08, T:0.46
Consensus pattern (37 bp):
ATATATATAATATATAGTTTTGAAAATGATTTTTAAA
Found at i:24264 original size:43 final size:41
Alignment explanation
Indices: 24177--24546 Score: 321
Period size: 43 Copynumber: 8.6 Consensus size: 41
24167 CCGCTAAAGT
* * * *
24177 TAGCGGCGTTTGAGAACAAAAAACACCGCAATAGGTCAAGATCTA
1 TAGCGGCGTTTTAGAAC---AAACGCCGCAAAAGGTC-ATATCTA
* * *
24222 TTGCGGCGCTTTTGGAACAAACGCCGCTAAAGGTCGATATCTA
1 TAGCGGCG-TTTTAGAACAAACGCCGCAAAAGGTC-ATATCTA
* * * *
24265 TAGTGGCGTTTTAGGAACAAACGCCGCTAAAAGTTGATATATA
1 TAGCGGCGTTTTA-GAACAAACGCCGC-AAAAGGTCATATCTA
* * *
24308 TAGTGGCGTTTTCAGAACAAACGCCGCAAAATGTCAGATCTA
1 TAGCGGCGTTTT-AGAACAAACGCCGCAAAAGGTCATATCTA
* **
24350 TAGCGGCGTTTTTAGAACAAAACGCCACAAAAGGTTGT-TCTA
1 TAGCGGCG-TTTTAGAAC-AAACGCCGCAAAAGGTCATATCTA
* * *
24392 TAGCGGCGTTTTAGATACAAATGTCACAAAAGGTCATAATCTA
1 TAGCGGCGTTTTAGA-ACAAACGCCGCAAAAGGTCAT-ATCTA
* * *
24435 TAGCGGCATTTTCAGAACAAACGCCGCAAAATGTCAGATCTA
1 TAGCGGCGTTTT-AGAACAAACGCCGCAAAAGGTCATATCTA
* *
24477 TAGCGGTGTTTTTAAAACAAAACGCCGCAAAAGGTCA-ATTCTA
1 TAGCGGCG-TTTTAGAAC-AAACGCCGCAAAAGGTCATA-TCTA
* *
24520 TAGTGGCATTTTTAGAACAAACGCCGC
1 TAGCGGC-GTTTTAGAACAAACGCCGC
24547 CAAATATGCA
Statistics
Matches: 267, Mismatches: 44, Indels: 31
0.78 0.13 0.09
Matches are distributed among these distances:
41 22 0.08
42 65 0.24
43 157 0.59
44 9 0.03
45 7 0.03
46 7 0.03
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (41 bp):
TAGCGGCGTTTTAGAACAAACGCCGCAAAAGGTCATATCTA
Found at i:24358 original size:85 final size:81
Alignment explanation
Indices: 24217--24546 Score: 306
Period size: 85 Copynumber: 3.9 Consensus size: 81
24207 ATAGGTCAAG
* * * *
24217 ATCTATTGCGGCGCTTTTGGAACAAACGCCGCTAAAGGTCGATATCTATAGTGGCGTTTTAGGAA
1 ATCTATAGCGGCG-TTTTAGAACAAACGCCGCAAAAGGTC-A-ATCTATAGCGGCGTTTTA-GAA
24282 CAAACGCCGCTAAAAGTTGAT
62 CAAACGCCGC-AAAAGTTGAT
* * *
24303 ATATATAGTGGCGTTTTCAGAACAAACGCCGCAAAATGTCAGATCTATAGCGGCGTTTTTAGAAC
1 ATCTATAGCGGCGTTTT-AGAACAAACGCCGCAAAAGGTCA-ATCTATAGCGGCG-TTTTAGAAC
*
24368 AAAACGCCACAAAAGGTTG-T
63 -AAACGCCGCAAAA-GTTGAT
* * * *
24388 -TCTATAGCGGCGTTTTAGATACAAATGTCACAAAAGGTCATAATCTATAGCGGCATTTTCAGAA
1 ATCTATAGCGGCGTTTTAGA-ACAAACGCCGCAAAAGGTC--AATCTATAGCGGCGTTTT-AGAA
* *
24452 CAAACGCCGCAAAA-TGTCAG
62 CAAACGCCGCAAAAGT-TGAT
* * * *
24472 ATCTATAGCGGTGTTTTTAAAACAAAACGCCGCAAAAGGTCAATTCTATAGTGGCATTTTTAGAA
1 ATCTATAGCGGCG-TTTTAGAAC-AAACGCCGCAAAAGGTCAA-TCTATAGCGGC-GTTTTAGAA
24537 CAAACGCCGC
62 CAAACGCCGC
24547 CAAATATGCA
Statistics
Matches: 203, Mismatches: 26, Indels: 31
0.78 0.10 0.12
Matches are distributed among these distances:
82 1 0.00
83 4 0.02
84 47 0.23
85 80 0.39
86 71 0.35
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (81 bp):
ATCTATAGCGGCGTTTTAGAACAAACGCCGCAAAAGGTCAATCTATAGCGGCGTTTTAGAACAAA
CGCCGCAAAAGTTGAT
Found at i:24412 original size:127 final size:126
Alignment explanation
Indices: 24197--24546 Score: 407
Period size: 127 Copynumber: 2.7 Consensus size: 126
24187 TGAGAACAAA
* * * * * * * *
24197 AAACACCGCAATAGGTCAAGATCTATTGCGGCGCTTTTGGAAC-AAACGCCGCTAAAGGTCGATA
1 AAACGCCGCAAAATGTC-AGATCTATAGCGGCGTTTTTAGAACAAAACGCCGCAAAAGGTAG-T-
* * * *
24261 TCTATAGTGGCGTTTTAGGAACAAACGCCGCTAAAAGTTGAT-ATATATAGTGGCGTTTTCAGAA
63 TCTATAGTGGCGTTTTA-GAACAAACGCCGC-AAAAGGTCATAATATATAGCGGCATTTTCAGAA
24325 C
126 C
* *
24326 AAACGCCGCAAAATGTCAGATCTATAGCGGCGTTTTTAGAACAAAACGCCACAAAAGGTTGTTCT
1 AAACGCCGCAAAATGTCAGATCTATAGCGGCGTTTTTAGAACAAAACGCCGCAAAAGGTAGTTCT
* * * * *
24391 ATAGCGGCGTTTTAGATACAAATGTCACAAAAGGTCATAATCTATAGCGGCATTTTCAGAAC
66 ATAGTGGCGTTTTAGA-ACAAACGCCGCAAAAGGTCATAATATATAGCGGCATTTTCAGAAC
* * *
24453 AAACGCCGCAAAATGTCAGATCTATAGCGGTGTTTTTAAAACAAAACGCCGCAAAAGGTCAATTC
1 AAACGCCGCAAAATGTCAGATCTATAGCGGCGTTTTTAGAACAAAACGCCGCAAAAGGT-AGTTC
*
24518 TATAGTGGCATTTTTAGAACAAACGCCGC
65 TATAGTGGC-GTTTTAGAACAAACGCCGC
24547 CAAATATGCA
Statistics
Matches: 188, Mismatches: 28, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
126 10 0.05
127 100 0.53
128 42 0.22
129 36 0.19
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (126 bp):
AAACGCCGCAAAATGTCAGATCTATAGCGGCGTTTTTAGAACAAAACGCCGCAAAAGGTAGTTCT
ATAGTGGCGTTTTAGAACAAACGCCGCAAAAGGTCATAATATATAGCGGCATTTTCAGAAC
Found at i:25087 original size:20 final size:20
Alignment explanation
Indices: 25062--25116 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
25052 ATACTAAGCT
25062 AAAATGAGAAAATTCATTTA
1 AAAATGAGAAAATTCATTTA
25082 AAAATGATG-AAATTCATTTA
1 AAAATGA-GAAAATTCATTTA
*
25102 AAAATGATAAAATTC
1 AAAATGAGAAAATTC
25117 CAAACAAACT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.31
Consensus pattern (20 bp):
AAAATGAGAAAATTCATTTA
Found at i:28096 original size:41 final size:41
Alignment explanation
Indices: 28049--28271 Score: 277
Period size: 41 Copynumber: 5.4 Consensus size: 41
28039 CTATAAATAC
* * *
28049 AAACGCCACTAAAGTACTAGTGTATAACGGCGTTTGTATAA
1 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
28090 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
1 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
* * * * * *
28131 AAACGCCACTAAAGTACAAGTCTTTTGCGGCGTTTATAAACAA
1 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGT--ATAA
*
28174 AAACGCCACTAAAGTACAATTGTATAG-GGTGTTTGTATAA
1 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
* * * * * *
28214 ATATGCCACTAAAGTACAAGTCTATAGCGATGTTTGTCTAG
1 AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
28255 AAACGCCACTAAAGTAC
1 AAACGCCACTAAAGTAC
28272 TACTTTGTTA
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
40 26 0.17
41 95 0.62
42 7 0.05
43 26 0.17
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (41 bp):
AAACGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAA
Found at i:28286 original size:124 final size:124
Alignment explanation
Indices: 28029--28307 Score: 357
Period size: 124 Copynumber: 2.2 Consensus size: 124
28019 GACTTATAAA
* * *
28029 TTTACGGCGTCTATAAATACAAACGCCACTAAAGTACTAGTGTATAACGGCGTTTGTATAAAAAC
1 TTTACGGCGTTTATAAA-AAAAACGCCACTAAAGTACAAGTGTATAACGGCGTTTGTATAAAAAC
* * *
28094 GCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAAAAACGCCACTAAAGTACAAGTCT
65 GCCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
* * * * * *
28154 TTTGCGGCGTTTATAAACAAAAACGCCACTAAAGTACAATTGTAT-AGGGTGTTTGTATAAATAT
1 TTTACGGCGTTTATAAA-AAAAACGCCACTAAAGTACAAGTGTATAACGGCGTTTGTATAAAAAC
* * *
28218 GCCACTAAAGTACAAGTCTATAGCGATGTTTGTCTAGAAACGCCACTAAAGTACTACT-T
65 GCCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
*
28277 TGTTACGGCGTTTATTGAAAAAAA-GCCACTA
1 T-TTACGGCGTTTA-TAAAAAAAACGCCACTA
28308 TTGATGAACC
Statistics
Matches: 134, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
123 9 0.07
124 83 0.62
125 42 0.31
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (124 bp):
TTTACGGCGTTTATAAAAAAAACGCCACTAAAGTACAAGTGTATAACGGCGTTTGTATAAAAACG
CCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
Found at i:28356 original size:124 final size:124
Alignment explanation
Indices: 28029--28356 Score: 319
Period size: 124 Copynumber: 2.6 Consensus size: 124
28019 GACTTATAAA
* * * * * *
28029 TTTACGGCGTCTATAAATACAAACGCCACTAAAGTACTAGT-GTATAACGGCGTTTGTATAAAAA
1 TTTACGGCGTTTATAAACAAAAACGCCACTAAAGTAC-AATCCTATAGCGGCGTTTGTAT-AAAA
* * *
28093 CGCCACTAAAGTACAAGTGTATAGCGGTGTTTGTATAAAAACGCCACTAAAGTACAAGTCT
64 CGCCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
* ** * *
28154 TTTGCGGCGTTTATAAACAAAAACGCCACTAAAGTACAATTGTATAG-GGTGTTTGTATAAATAT
1 TTTACGGCGTTTATAAACAAAAACGCCACTAAAGTACAATCCTATAGCGGCGTTTGTATAAA-AC
* * *
28218 GCCACTAAAGTACAAGTCTATAGCGATGTTTGTCTAGAAACGCCACTAAAGTACTACT-T
65 GCCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
* ** * *
28277 TGTTACGGCGTTTATTGAA-AAAAA-GCCACTATTG-ATGAA-CCTATTGCGGCGTTTGTATAGA
1 T-TTACGGCGTTTA-TAAACAAAAACGCCACTAAAGTA-CAATCCTATAGCGGCGTTTGTATA-A
* *
28338 AACGTCGCTAAAGTTACAA
62 AACGCCACTAAAG-TACAA
28357 TTTTGTGGCG
Statistics
Matches: 169, Mismatches: 26, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
122 5 0.03
123 35 0.21
124 88 0.52
125 41 0.24
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (124 bp):
TTTACGGCGTTTATAAACAAAAACGCCACTAAAGTACAATCCTATAGCGGCGTTTGTATAAAACG
CCACTAAAGTACAAGTCTATAGCGATGTTTGTATAAAAACGCCACTAAAGTACAACTCT
Found at i:28489 original size:17 final size:18
Alignment explanation
Indices: 28467--28509 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
28457 TAGTGATTAA
*
28467 TATTATTTTATT-TTTTT
1 TATTATTTTATTATTATT
28484 TATTATTTTATTATTATT
1 TATTATTTTATTATTATT
28502 TATT-TTTT
1 TATTATTTT
28510 CCGTTTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
TATTATTTTATTATTATT
Found at i:29628 original size:24 final size:25
Alignment explanation
Indices: 29583--29629 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
29573 CTTTTTCTAC
*
29583 TTTCTTTTTGTTATTTAATTTAACA
1 TTTCTTTTTGTTATTCAATTTAACA
* *
29608 TTTCTTTTT-TTCTTCATTTTAA
1 TTTCTTTTTGTTATTCAATTTAA
29630 AAATTAACAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.19, C:0.11, G:0.02, T:0.68
Consensus pattern (25 bp):
TTTCTTTTTGTTATTCAATTTAACA
Found at i:29665 original size:4 final size:4
Alignment explanation
Indices: 29652--29721 Score: 58
Period size: 4 Copynumber: 18.0 Consensus size: 4
29642 TTTCACTCTT
* * *
29652 TTTA -TTA TTTA TTTA TTTA TTTG TTTA TTTA TTTA CTTTAA ATT- TTAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTT-A TTTA TTTA
*
29700 TTTT TTTA -TTA TTTA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA
29722 AAAAAATTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
3 10 0.19
4 36 0.69
5 5 0.10
6 1 0.02
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:29767 original size:12 final size:12
Alignment explanation
Indices: 29750--29774 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29740 TTAATATGAT
29750 TTTATTTATTTG
1 TTTATTTATTTG
29762 TTTATTTATTTG
1 TTTATTTATTTG
29774 T
1 T
29775 AACCCTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTATTTATTTG
Found at i:30537 original size:21 final size:21
Alignment explanation
Indices: 30508--30556 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
30498 TGACTATCGA
30508 ATTGCGATTTCCCAAATTCGC
1 ATTGCGATTTCCCAAATTCGC
* * *
30529 ATTGTGATTTTCCTAATTCGC
1 ATTGCGATTTCCCAAATTCGC
*
30550 AATGCGA
1 ATTGCGA
30557 ATACGTAAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (21 bp):
ATTGCGATTTCCCAAATTCGC
Found at i:30607 original size:21 final size:21
Alignment explanation
Indices: 30546--30622 Score: 106
Period size: 20 Copynumber: 3.8 Consensus size: 21
30536 TTTTCCTAAT
30546 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
*
30566 TCGCAACGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
30586 TCGCAATGCGAATTA-GTAAAA
1 TCGCAATGCGAATTACGT-AAA
*
30607 TCGCAATGCGATTTAC
1 TCGCAATGCGAATTAC
30623 ATAGCGCCAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.02
20 28 0.56
21 21 0.42
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTACGTAAA
Found at i:31221 original size:33 final size:33
Alignment explanation
Indices: 31184--31262 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
31174 CGCAACGAGA
31184 GAAATGAAAATCGAAACGAGAGAATCACAACGC
1 GAAATGAAAATCGAAACGAGAGAATCACAACGC
* * * *
31217 GAAATGAAAATTGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGAAACGAGAGAATCACAACGC
**
31250 GAAACCAAAATCG
1 GAAATGAAAATCG
31263 CATTGCGATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.49, C:0.19, G:0.20, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGAAACGAGAGAATCACAACGC
Found at i:31282 original size:19 final size:19
Alignment explanation
Indices: 31260--31332 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
31250 GAAACCAAAA
31260 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
31279 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
31295 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
31312 TCGCGTTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
31331 TC
1 TC
31333 AACCAAAAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 6 0.13
16 7 0.15
17 7 0.15
19 26 0.57
ACGTcount: A:0.12, C:0.22, G:0.18, T:0.48
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:33215 original size:94 final size:93
Alignment explanation
Indices: 33025--33400 Score: 589
Period size: 94 Copynumber: 4.1 Consensus size: 93
33015 TAGATTGCTT
* *
33025 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
33086 ATTTGTCTTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGA
*
33115 AGTAAATTTATTCGGTTGTTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
33180 ATTTGTCTTTGTTTTGTCTTTTCGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* *
33209 AGTAAATTTGTTTGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
33274 ATTTGTCTTTGTTTTGTCTTTTGGTTTAA
66 ATTTGTCTTTGTTTTGTCTTTTGG-TTGA
* * * *
33303 AGTAAATTTTTTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
33368 ATTTGTCTTTGTTTTGTATTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
33396 AGTAA
1 AGTAA
33401 TGCAATCCAT
Statistics
Matches: 264, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
90 34 0.13
92 3 0.01
93 29 0.11
94 196 0.74
95 2 0.01
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.48
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:33518 original size:20 final size:19
Alignment explanation
Indices: 33491--33567 Score: 109
Period size: 19 Copynumber: 4.0 Consensus size: 19
33481 TCTTTTGGTT
33491 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
33510 GAGAATGAAAATCGCAACGC
1 GA-AATGAAAATCGCAACGA
* *
33530 GAAACGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
33549 GAAATGAAAGTCGCAACGA
1 GAAATGAAAATCGCAACGA
33568 CAAAATCGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
19 34 0.65
20 18 0.35
ACGTcount: A:0.48, C:0.19, G:0.23, T:0.09
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:33540 original size:19 final size:19
Alignment explanation
Indices: 33491--33626 Score: 138
Period size: 20 Copynumber: 7.3 Consensus size: 19
33481 TCTTTTGGTT
* *
33491 GAAATGAAAATCGCAACGA
1 GAAACGAAAATCGCAACGC
*
33510 GAGAATGAAAATCGCAACGC
1 GA-AACGAAAATCGCAACGC
33530 GAAACGAAAATCGCAACGC
1 GAAACGAAAATCGCAACGC
* *
33549 GAAATGAAAGTCGCAA--C
1 GAAACGAAAATCGCAACGC
33566 G--AC-AAAATCGCAACGC
1 GAAACGAAAATCGCAACGC
*
33582 GAAACCAAAAATCGCAACGC
1 GAAA-CGAAAATCGCAACGC
* *
33602 GAAACAAAAAATTGCAACGC
1 GAAAC-GAAAATCGCAACGC
33622 GAAAC
1 GAAAC
33627 TATAATCGCG
Statistics
Matches: 102, Mismatches: 7, Indels: 15
0.82 0.06 0.12
Matches are distributed among these distances:
14 9 0.09
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 34 0.33
20 53 0.52
ACGTcount: A:0.49, C:0.23, G:0.20, T:0.08
Consensus pattern (19 bp):
GAAACGAAAATCGCAACGC
Found at i:33573 original size:33 final size:36
Alignment explanation
Indices: 33496--33625 Score: 122
Period size: 33 Copynumber: 3.5 Consensus size: 36
33486 TGGTTGAAAT
*
33496 GAAAATCGCAACGAGAGAATGAAAATCGCAACGCGAAAC
1 GAAAATCGCAACGCGA-AATGAAAATCGCAAC-CG-AAC
*
33535 GAAAATCGCAACGCGAAATGAAAGTCGCAA-CG-AC
1 GAAAATCGCAACGCGAAATGAAAATCGCAACCGAAC
**
33569 -AAAATCGCAACGCGAAACCAAAAATCGCAACGCGAAAC
1 GAAAATCGCAACGCGAAA-TGAAAATCGCAAC-CG-AAC
* *
33607 AAAAAATTGCAACGCGAAA
1 -GAAAATCGCAACGCGAAA
33626 CTATAATCGC
Statistics
Matches: 78, Mismatches: 6, Indels: 13
0.80 0.06 0.13
Matches are distributed among these distances:
33 17 0.22
34 11 0.14
36 4 0.05
38 15 0.19
39 15 0.19
40 16 0.21
ACGTcount: A:0.49, C:0.23, G:0.20, T:0.08
Consensus pattern (36 bp):
GAAAATCGCAACGCGAAATGAAAATCGCAACCGAAC
Found at i:33679 original size:19 final size:20
Alignment explanation
Indices: 33631--33682 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
33621 CGAAACTATA
33631 ATCGCGTTGCGATTTTCATT
1 ATCGCGTTGCGATTTTCATT
* *
33651 CTCTCGTTGCGATTTTCA-T
1 ATCGCGTTGCGATTTTCATT
33670 ATCGCGTTGCGAT
1 ATCGCGTTGCGAT
33683 AGTCATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.42
Consensus pattern (20 bp):
ATCGCGTTGCGATTTTCATT
Found at i:33689 original size:39 final size:39
Alignment explanation
Indices: 33631--33706 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
33621 CGAAACTATA
**
33631 ATCGCGTTGCGATTTTCATTCTCTC-GTTGCGATTTTCAT
1 ATCGCGTTGCGATAGTCATT-TCTCAGTTGCGATTTTCAT
*
33670 ATCGCGTTGCGATAGTCATTTTTCATGTTGCGATTTT
1 ATCGCGTTGCGATAGTCATTTCTCA-GTTGCGATTTT
33707 AAGTTCCAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 3 0.09
39 18 0.56
40 11 0.34
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (39 bp):
ATCGCGTTGCGATAGTCATTTCTCAGTTGCGATTTTCAT
Found at i:35371 original size:14 final size:14
Alignment explanation
Indices: 35348--35383 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
35338 ATTGTTTAAT
*
35348 TGATTCGTAAAAGA
1 TGATTTGTAAAAGA
*
35362 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
35376 TGATTTGT
1 TGATTTGT
35384 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.33, C:0.03, G:0.22, T:0.42
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:35506 original size:19 final size:17
Alignment explanation
Indices: 35490--35620 Score: 64
Period size: 19 Copynumber: 7.8 Consensus size: 17
35480 AAAAATGACT
35490 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
35509 ATCGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
35523 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
* *
35542 ATTGCAA--CGAGA-GA
1 ATCGCAATGCGAAATGA
35556 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
**
35575 ATCGCAA--CG-AGGGA
1 ATCGCAATGCGAAATGA
*
35589 ATCGCAAAGCGAAATGAAA
1 ATCGCAATGCGAAATG--A
*
35608 ATCGCAACGCGAA
1 ATCGCAATGCGAA
35621 TTTAGTTTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 30
0.68 0.09 0.24
Matches are distributed among these distances:
14 23 0.27
16 14 0.16
17 14 0.16
19 35 0.41
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.12
Consensus pattern (17 bp):
ATCGCAATGCGAAATGA
Found at i:35527 original size:14 final size:14
Alignment explanation
Indices: 35508--35595 Score: 50
Period size: 14 Copynumber: 5.6 Consensus size: 14
35498 GCGAAATGAA
35508 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
35522 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
35541 AATTGCAACGAGAG
1 AATCGCAACGAGAG
*
35555 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
35574 AATCGCAACGAGGG
1 AATCGCAACGAGAG
35588 AATCGCAA
1 AATCGCAA
35596 AGCGAAATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
14 26 0.46
15 2 0.04
16 4 0.07
17 4 0.07
18 2 0.04
19 19 0.33
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.12
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:35532 original size:33 final size:33
Alignment explanation
Indices: 35490--35616 Score: 227
Period size: 33 Copynumber: 3.8 Consensus size: 33
35480 AAAAATGACT
35490 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
35523 ATCGCAATGCGAAATGAAAATTGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
35556 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
35589 ATCGCAAAGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
35617 CGAATTTAGT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 90 1.00
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:35654 original size:19 final size:19
Alignment explanation
Indices: 35626--35711 Score: 74
Period size: 19 Copynumber: 4.7 Consensus size: 19
35616 GCGAATTTAG
*
35626 TTTCGGGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
*
35645 TTTGGCGTTGCGA--TTC-
1 TTTCGCGTTGCGATTTTCA
*
35661 --TCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTCA
* **
35678 TTTCGCATTGCGATAGTCA
1 TTTCGCGTTGCGATTTTCA
35697 TTTCCGCGTTGCGAT
1 TTT-CGCGTTGCGAT
35712 AGACATTAAG
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
14 9 0.17
16 3 0.06
17 3 0.06
19 27 0.52
20 10 0.19
ACGTcount: A:0.12, C:0.21, G:0.24, T:0.43
Consensus pattern (19 bp):
TTTCGCGTTGCGATTTTCA
Found at i:35710 original size:20 final size:19
Alignment explanation
Indices: 35664--35718 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
35654 GCGATTCTCT
**
35664 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
35683 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
35703 CGTTGCGATAGACATT
1 CGTTGCGATAGTCATT
35719 AAGATGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:35757 original size:20 final size:20
Alignment explanation
Indices: 35685--35757 Score: 60
Period size: 20 Copynumber: 3.6 Consensus size: 20
35675 TCATTTCGCA
* *
35685 TTGCGATAGTCATTTCCGCG
1 TTGCGATAGTCATTTACGTG
* *
35705 TTGCGATAGACA-TTAAGATG
1 TTGCGATAGTCATTTACG-TG
*
35725 ATTGCGA-ACGTCATTTTCGTG
1 -TTGCGATA-GTCATTTACGTG
35746 TTGCGATAGTCA
1 TTGCGATAGTCA
35758 AATGAATGCC
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.07
20 23 0.56
21 12 0.29
22 3 0.07
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (20 bp):
TTGCGATAGTCATTTACGTG
Found at i:39204 original size:41 final size:41
Alignment explanation
Indices: 39153--39268 Score: 232
Period size: 41 Copynumber: 2.8 Consensus size: 41
39143 GCGATTTACT
39153 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
39194 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
39235 AAATCGCAATGCGATTACGTAAATCGCAATGCGA
1 AAATCGCAATGCGATTACGTAAATCGCAATGCGA
39269 TTACGATTTA
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.39, C:0.18, G:0.22, T:0.22
Consensus pattern (41 bp):
AAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGA
Found at i:39271 original size:61 final size:61
Alignment explanation
Indices: 39142--39273 Score: 196
Period size: 61 Copynumber: 2.2 Consensus size: 61
39132 AGAATCTCGT
* *
39142 TGCGATTTAC-TAAATCGCAATGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGA-TTACGTAAATCGCAATGCGATTACGAAAATCGCAATGCGAATTACGAAAATCGCAA
* *
39203 TGCGATTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCG-ATTACGTAAATCGCAA
1 TGCGATTACGTAAATCGCAATGCG-ATTACGAAAATCGCAATGCGAATTACGAAAATCGCAA
39264 TGCGATTACG
1 TGCGATTACG
39274 ATTTACGTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
60 4 0.06
61 43 0.66
62 18 0.28
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (61 bp):
TGCGATTACGTAAATCGCAATGCGATTACGAAAATCGCAATGCGAATTACGAAAATCGCAA
Found at i:39298 original size:21 final size:21
Alignment explanation
Indices: 39141--39432 Score: 240
Period size: 21 Copynumber: 14.0 Consensus size: 21
39131 CAGAATCTCG
39141 TTGCGATTTAC-TAAATCGCA
1 TTGCGATTTACGTAAATCGCA
*
39161 ATGCGA-TTACGTAAATCGCA
1 TTGCGATTTACGTAAATCGCA
* * * *
39181 ATGCGAATTAGGAAAATCGCA
1 TTGCGATTTACGTAAATCGCA
*
39202 ATGCGA-TTACGTAAATCGCA
1 TTGCGATTTACGTAAATCGCA
* * * *
39222 ATGCGAATTAGGAAAATCGCA
1 TTGCGATTTACGTAAATCGCA
*
39243 ATGCGA-TTACGTAAATCGCAATGCGA
1 TTGCGATTTACGTAAAT--C---GC-A
* *
39269 TTACGATTTACGTAATTCGCA
1 TTGCGATTTACGTAAATCGCA
* * * *
39290 TTGCGATTTTCCTAATTCGTA
1 TTGCGATTTACGTAAATCGCA
39311 TTGCGATTTACGT-AATCGCA
1 TTGCGATTTACGTAAATCGCA
39331 TTGCGATTTA-GT-AATCGCA
1 TTGCGATTTACGTAAATCGCA
* * *
39350 TTGCGATTTTCCTAATTCGCA
1 TTGCGATTTACGTAAATCGCA
* * *
39371 TTGCGATTTTCCTAATTCGCA
1 TTGCGATTTACGTAAATCGCA
*
39392 TTGTGATTTACGT-AATCGCA
1 TTGCGATTTACGTAAATCGCA
* *
39412 TTGCGATTTAGGAAAATCGCA
1 TTGCGATTTACGTAAATCGCA
39433 ACGCGAATTT
Statistics
Matches: 229, Mismatches: 30, Indels: 25
0.81 0.11 0.09
Matches are distributed among these distances:
19 22 0.10
20 78 0.34
21 109 0.48
22 3 0.01
25 3 0.01
26 5 0.02
27 9 0.04
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (21 bp):
TTGCGATTTACGTAAATCGCA
Found at i:39367 original size:60 final size:62
Alignment explanation
Indices: 39272--39420 Score: 239
Period size: 60 Copynumber: 2.4 Consensus size: 62
39262 AATGCGATTA
* *
39272 CGATTTACGTAATTCGCATTGCGATTTTCCTAATTCGTATTGCGATTTACGTAA-TCGCATTG
1 CGATTTACGTAA-TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACCTAATTCGCATTG
*
39334 CGATTTA-GTAATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCGCATTG
1 CGATTTACGTAATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACCTAATTCGCATTG
*
39395 TGATTTACGTAATCGCATTGCGATTT
1 CGATTTACGTAATCGCATTGCGATTT
39421 AGGAAAATCG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
60 38 0.47
61 18 0.22
62 25 0.31
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.41
Consensus pattern (62 bp):
CGATTTACGTAATCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACCTAATTCGCATTG
Found at i:39400 original size:81 final size:81
Alignment explanation
Indices: 39272--39422 Score: 266
Period size: 81 Copynumber: 1.9 Consensus size: 81
39262 AATGCGATTA
* *
39272 CGATTTACGTAATTCGCATTGCGATTTTCCTAATTCGTATTGCGATTTACGTAATCGCATTGCGA
1 CGATTTACCTAATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAATCGCATTGCGA
39337 TTTAGTAATCGCATTG
66 TTTAGTAATCGCATTG
* *
39353 CGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCGCATTGTGATTTACGTAATCGCATTGCGA
1 CGATTTACCTAATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAATCGCATTGCGA
39418 TTTAG
66 TTTAG
39423 GAAAATCGCA
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (81 bp):
CGATTTACCTAATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTAATCGCATTGCGA
TTTAGTAATCGCATTG
Found at i:39432 original size:41 final size:42
Alignment explanation
Indices: 39141--39421 Score: 209
Period size: 41 Copynumber: 6.7 Consensus size: 42
39131 CAGAATCTCG
* * *
39141 TTGCGATTTAC-TAAATCGCAATGCGA-TTACGTAAATCGCA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
* * * * * * *
39181 ATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAAATCGCA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
* * * * * * *
39222 ATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAAATCGCAATGCGA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAAT--C---GC-A
* * * *
39269 TTACGATTTACGTAATTCGCATTGCGATTTTCCTAATTCGTA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
*
39311 TTGCGATTTACGTAA-TCGCATTGCGATTTA-GT-AATCGCA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
* * * *
39350 TTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCGCA
1 TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
*
39392 TTGTGATTTACGTAA-TCGCATTGCGATTTA
1 TTGCGATTTACGTAATTCGCATTGCGATTTA
39422 GGAAAATCGC
Statistics
Matches: 201, Mismatches: 29, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
39 18 0.09
40 23 0.11
41 94 0.47
42 33 0.16
43 2 0.01
46 3 0.01
47 21 0.10
48 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (42 bp):
TTGCGATTTACGTAATTCGCATTGCGATTTACCTAAATCGCA
Found at i:39438 original size:21 final size:20
Alignment explanation
Indices: 39405--39460 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
39395 TGATTTACGT
*
39405 AATCGCATTGCGATTTAGGAA
1 AATCGCAATGCGATTT-GGAA
* *
39426 AATCGCAACGCGAATTTGGGA
1 AATCGCAATGCG-ATTTGGAA
39447 AATCGCAATGCGAT
1 AATCGCAATGCGAT
39461 AGTCAGAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 2 0.07
21 24 0.80
22 4 0.13
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (20 bp):
AATCGCAATGCGATTTGGAA
Found at i:40553 original size:23 final size:23
Alignment explanation
Indices: 40509--40553 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
40499 CAATCAAATT
* *
40509 AATTTATTTTTTCTTATCCTTAC
1 AATTTATTTTTTCTAATACTTAC
40532 AATTTAATTTTTTC-AATACTTA
1 AATTT-ATTTTTTCTAATACTTA
40554 ATATTAAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (23 bp):
AATTTATTTTTTCTAATACTTAC
Found at i:50986 original size:15 final size:15
Alignment explanation
Indices: 50968--50998 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
50958 AAATTCTAAA
50968 TATTTAAATAAAAAT
1 TATTTAAATAAAAAT
*
50983 TATTTATATAAAAAT
1 TATTTAAATAAAAAT
50998 T
1 T
50999 CTATATGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATTTAAATAAAAAT
Found at i:58139 original size:7 final size:6
Alignment explanation
Indices: 58106--58137 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
58096 AGAAGAAGAA
*
58106 GGAGGA GGAGGG GGAGGG GGAGGG GGAGGG GG
1 GGAGGG GGAGGG GGAGGG GGAGGG GGAGGG GG
58138 GAAAGTAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.00, G:0.81, T:0.00
Consensus pattern (6 bp):
GGAGGG
Found at i:62645 original size:28 final size:28
Alignment explanation
Indices: 62613--62671 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
62603 ACATATTTAA
*
62613 AAGTAATTAATAAAACAAATATAGTAGC
1 AAGTAAATAATAAAACAAATATAGTAGC
* *
62641 AAGTAAATAATAAAACATATATATTAGC
1 AAGTAAATAATAAAACAAATATAGTAGC
62669 AAG
1 AAG
62672 GAAGGATACA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (28 bp):
AAGTAAATAATAAAACAAATATAGTAGC
Found at i:62734 original size:14 final size:14
Alignment explanation
Indices: 62715--62742 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
62705 TGTTGTTGAT
62715 TTGTTCTTTCTCAC
1 TTGTTCTTTCTCAC
62729 TTGTTCTTTCTCAC
1 TTGTTCTTTCTCAC
62743 AATTAACTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.07, C:0.29, G:0.07, T:0.57
Consensus pattern (14 bp):
TTGTTCTTTCTCAC
Found at i:63712 original size:10 final size:10
Alignment explanation
Indices: 63673--63712 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
63663 CGCTCACTCC
63673 TTTTCTTATA
1 TTTTCTTATA
63683 TTTT-TTA-A
1 TTTTCTTATA
63691 TTTTCATT-TA
1 TTTTC-TTATA
63701 TTTTCTTATA
1 TTTTCTTATA
63711 TT
1 TT
63713 ACATTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 5 0.19
9 5 0.19
10 16 0.62
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTCTTATA
Found at i:63803 original size:22 final size:23
Alignment explanation
Indices: 63757--63803 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
63747 TAATTTTATA
* *
63757 TTTATGTTATATTTTTCTTTGTT
1 TTTATGTTATATTTTTCTGTCTT
63780 TTTATG-TATATTTTTCTGTCTT
1 TTTATGTTATATTTTTCTGTCTT
63802 TT
1 TT
63804 GACATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.13, C:0.06, G:0.09, T:0.72
Consensus pattern (23 bp):
TTTATGTTATATTTTTCTGTCTT
Found at i:70161 original size:21 final size:20
Alignment explanation
Indices: 70132--70179 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
70122 ATCATTAATT
* *
70132 ATTTAATTATTTATCTTTATA
1 ATTTTATTATTGATCTTT-TA
70153 ATTTTATTATTGATCTTTTA
1 ATTTTATTATTGATCTTTTA
70173 ATTTTAT
1 ATTTTAT
70180 CAATTGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (20 bp):
ATTTTATTATTGATCTTTTA
Found at i:70185 original size:21 final size:21
Alignment explanation
Indices: 70144--70186 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
70134 TTAATTATTT
*
70144 ATCTTTATAATTTTATTATTG
1 ATCTTTATAATTTTATAATTG
70165 ATCTTT-TAATTTTATCAATTG
1 ATCTTTATAATTTTAT-AATTG
70186 A
1 A
70187 ATTATCTAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.58
Consensus pattern (21 bp):
ATCTTTATAATTTTATAATTG
Found at i:71592 original size:27 final size:29
Alignment explanation
Indices: 71542--71595 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
71532 TTCATTAATG
*
71542 ATAATTTAAAATATATAATGTATTTAGAT
1 ATAATTAAAAATATATAATGTATTTAGAT
*
71571 ATAATTAAAAAT-TAT-ATTTATTTAG
1 ATAATTAAAAATATATAATGTATTTAG
71596 TTGTTTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 3 0.13
29 11 0.48
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (29 bp):
ATAATTAAAAATATATAATGTATTTAGAT
Done.