genome.fa.s2936.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002936.1 Hibiscus syriacus cultivar Beakdansim tig00006065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51692

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9144--9308	56	3.0	53	69	8	143	27	22	18	31	1.97
9157--9393	54	4.3	55	75	4	192	26	23	18	31	1.98
9157--9393	110	2.2	110	84	1	296	26	23	18	31	1.98
9310--9435	54	2.3	54	83	4	146	27	22	17	32	1.96
9368--9472	55	1.9	55	84	3	140	25	21	16	36	1.94
19868--19921	3	17.0	3	88	11	81	31	0	0	68	0.90
19868--19921	13	4.2	13	95	4	101	31	0	0	68	0.90
22753--22792	21	2.0	21	90	5	64	17	12	0	70	1.18
24467--24624	21	7.8	20	72	7	86	38	25	17	18	1.92
24591--24784	20	9.6	20	81	5	221	35	25	19	19	1.95
24591--24784	60	3.2	60	83	0	253	35	25	19	19	1.95
25166--25236	33	2.2	33	92	0	115	11	22	18	47	1.80
25315--25420	21	5.6	20	70	16	91	44	18	25	11	1.83
25314--25431	41	3.2	37	87	10	140	43	19	26	11	1.84
25375--25431	14	3.7	14	75	20	60	43	22	24	8	1.81
25367--25447	33	2.5	33	95	0	144	46	22	22	8	1.78
25443--25540	19	5.7	19	70	22	90	10	23	22	43	1.83
25465--25554	14	5.7	14	72	23	72	8	24	23	43	1.82
25448--25562	33	3.5	33	97	0	221	9	23	20	46	1.80
27259--27725	92	5.1	93	98	1	904	22	12	19	45	1.84
27259--27725	185	2.5	185	98	1	902	22	12	19	45	1.84
27773--27887	19	6.3	19	82	10	141	46	28	16	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27888--27942	14	3.6	14	76	21	56	10	20	21	47	1.80
27883--27961	33	2.4	33	95	0	140	11	21	21	45	1.83
27894--27982	19	5.1	17	77	18	78	8	19	22	49	1.76
27933--27998	19	3.4	19	87	6	89	10	16	27	45	1.80
29916--29952	14	2.6	14	91	0	65	32	0	21	45	1.52
30038--30082	19	2.4	19	100	0	90	46	17	20	15	1.84
30129--30326	19	11.4	19	73	21	193	14	20	18	46	1.83
30107--30340	52	4.6	52	83	11	306	13	21	18	46	1.84
30219--30273	14	3.6	14	73	21	56	10	23	20	45	1.82
30107--30340	33	6.9	33	79	13	269	13	21	18	46	1.84
31355--31401	24	2.0	24	87	8	69	38	21	14	25	1.92
32084--32313	20	11.5	20	85	1	237	19	18	24	36	1.94
32300--32356	21	2.7	21	77	0	60	22	17	19	40	1.91
33235--33273	20	1.9	21	94	5	71	15	15	23	46	1.83
32715--33613	182	4.9	181	85	4	1191	27	15	12	44	1.83
32714--33613	365	2.5	364	91	0	1444	27	15	12	44	1.83
36077--36161	42	2.0	42	90	0	134	31	9	41	17	1.82
36216--36247	2	16.5	2	93	6	57	50	0	0	50	1.00
42477--42528	24	2.3	22	78	15	61	57	3	23	15	1.54
50967--51241	39	7.1	39	72	12	194	38	22	17	21	1.93
51107--51286	39	4.6	38	83	8	173	40	22	17	20	1.91
51187--51299	42	2.8	39	82	10	138	38	22	17	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51637--51669	17	1.9	17	100	0	66	36	30	21	12	1.90

Tables:   1

The End!