genome.fa.s2937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002937.1 Hibiscus syriacus cultivar Beakdansim tig00006066_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81661

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670--701	17	1.9	16	93	6	55	65	0	0	34	0.93
8855--8898	23	2.0	23	90	4	72	54	6	9	29	1.58
21565--21624	20	2.8	20	82	7	66	26	31	25	16	1.96
25090--25140	24	2.1	25	92	3	86	23	27	27	21	1.99
25327--25396	31	2.3	30	80	4	70	32	27	2	37	1.72
31907--31953	24	1.9	25	86	4	69	27	21	27	23	1.99
32142--32210	29	2.3	29	80	7	68	34	27	2	34	1.72
32627--32684	21	2.8	21	97	0	107	17	29	24	29	1.97
33954--34034	2	40.5	2	100	0	162	49	0	0	50	1.00
36435--36468	16	2.1	17	88	5	52	58	2	5	32	1.37
38083--38155	36	2.0	36	97	0	137	12	47	1	38	1.50
39848--39933	23	3.7	23	78	3	93	25	9	19	45	1.80
42350--42404	21	2.5	22	82	11	67	56	0	0	43	0.99
42347--42463	27	4.4	27	77	10	91	54	1	0	42	1.16
42842--42900	21	2.8	21	94	0	100	50	22	6	20	1.71
45175--45222	25	1.9	25	100	0	96	45	16	10	27	1.80
46795--47003	41	5.1	41	81	4	226	34	16	18	31	1.93
46463--46869	205	2.0	206	84	6	531	34	17	15	32	1.91
46795--47003	81	2.6	82	85	2	278	34	16	18	31	1.93
47193--47220	13	2.2	13	100	0	56	35	14	7	42	1.73
47191--47222	13	2.6	12	90	9	55	40	15	6	37	1.73
48484--48623	71	2.0	71	88	0	208	33	17	25	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55731--55971	56	4.3	56	91	1	376	29	21	16	32	1.95
55930--56012	41	2.0	41	92	0	139	26	24	16	32	1.96
55874--56069	97	2.0	97	92	0	329	26	20	18	34	1.96
56522--56570	19	2.5	19	90	3	71	20	28	14	36	1.92
62699--63022	56	5.8	56	85	3	397	28	19	16	35	1.93
62699--63022	111	2.9	111	84	2	411	28	19	16	35	1.93
64308--64404	47	2.1	47	100	0	194	45	4	13	37	1.63
68254--68288	18	2.0	17	94	5	61	74	0	8	17	1.06
73174--73248	2	37.5	2	100	0	150	49	0	0	50	1.00
73302--73338	2	18.5	2	89	10	58	48	2	0	48	1.15

Tables:   1

The End!