genome.fa.s2938.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002938.1 Hibiscus syriacus cultivar Beakdansim tig00006068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117371

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1276--1364	19	4.4	19	74	14	79	30	28	5	35	1.80
12829--13020	97	2.0	97	84	4	253	26	20	20	32	1.97
14656--14858	68	3.0	68	90	0	316	36	6	9	47	1.61
16350--16391	20	2.2	20	91	4	68	33	23	0	42	1.55
16515--16855	112	3.0	112	90	3	515	36	8	10	44	1.69
24125--24162	16	2.5	15	84	16	51	47	0	2	50	1.15
26218--26287	29	2.4	29	85	7	88	30	14	5	50	1.66
26236--26461	109	2.0	115	84	8	304	27	13	5	53	1.62
26918--26954	19	1.9	19	100	0	74	32	8	21	37	1.83
35571--35630	20	3.0	18	73	21	57	30	3	3	63	1.27
35626--35675	22	2.3	22	100	0	100	48	8	4	40	1.51
46434--46482	2	24.5	2	100	0	98	51	0	0	48	1.00
47579--47634	27	2.1	27	83	6	69	39	14	8	37	1.77
47941--47967	2	13.5	2	100	0	54	48	0	0	51	1.00
48587--48612	13	2.0	13	100	0	52	76	15	7	0	0.99
52095--52486	185	2.1	184	90	2	601	46	7	3	42	1.48
67432--67465	9	3.8	9	88	11	52	76	0	2	20	0.92
67431--67476	13	3.5	13	84	3	56	78	0	4	17	0.91
67517--67543	2	13.5	2	100	0	54	51	0	0	48	1.00
67929--67953	2	12.5	2	100	0	50	52	0	0	48	1.00
67951--67986	18	2.1	18	89	5	56	66	2	5	25	1.27
68345--68482	37	3.8	36	84	6	172	29	14	13	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68379--68479	34	2.9	35	91	8	161	27	14	13	43	1.84
69025--70071	105	10.0	105	90	2	1531	22	18	26	33	1.96
69025--70071	205	5.0	206	90	3	1515	22	18	26	33	1.96
69025--70071	423	2.5	413	89	3	1539	22	18	26	33	1.96
70778--71018	36	6.9	35	74	15	176	42	14	18	24	1.88
71919--71969	22	2.3	22	93	0	84	27	11	25	35	1.91
72577--72622	19	2.3	20	88	3	67	4	6	6	82	0.94
72592--72641	18	2.7	18	84	9	57	2	10	6	82	0.92
75657--75690	9	3.8	9	88	11	52	76	0	2	20	0.92
75656--75701	13	3.5	13	84	3	56	78	0	4	17	0.91
75742--75766	2	12.5	2	100	0	50	52	0	0	48	1.00
76149--76179	2	15.5	2	100	0	62	51	0	0	48	1.00
76177--76212	18	2.1	18	89	5	56	66	2	5	25	1.27
76573--76710	37	3.8	36	84	6	172	29	14	13	42	1.84
76607--76707	34	2.9	35	91	8	161	27	14	13	43	1.84
78003--78035	2	16.5	2	100	0	66	48	0	0	51	1.00
79748--80099	43	8.2	42	79	10	184	34	22	21	22	1.97
79783--80099	85	3.7	83	80	9	320	34	22	21	22	1.97
79745--80099	128	2.8	127	80	8	380	34	21	20	22	1.97
83925--84449	41	12.6	41	80	3	532	34	18	19	28	1.95
83942--84433	125	4.0	123	79	4	378	34	17	19	29	1.95
83929--84450	166	3.2	166	88	1	762	34	18	18	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86078--86110	15	2.3	15	90	10	52	45	18	24	12	1.83
87809--87869	31	2.0	30	83	3	77	47	3	6	42	1.45
90147--90202	27	2.0	28	93	3	96	58	7	8	25	1.53
90699--90726	2	14.0	2	100	0	56	50	0	0	50	1.00
92065--92139	25	3.3	23	77	20	77	57	0	5	37	1.22
92081--92139	21	2.6	22	85	15	84	50	0	6	42	1.28
92890--92957	31	2.2	31	81	5	84	48	8	10	32	1.68
93671--93703	8	4.1	8	100	0	66	36	15	36	12	1.84
97214--97248	6	5.8	6	89	0	52	31	2	45	20	1.65
98568--98625	30	1.9	30	92	0	98	39	34	13	12	1.82
102894--102998	30	3.5	30	96	0	192	27	18	11	42	1.84
105808--105840	17	1.9	17	100	0	66	36	0	6	57	1.23
109721--109786	20	3.2	20	67	12	53	36	12	7	43	1.70
112694--112721	2	14.0	2	100	0	56	0	50	0	50	1.00
113180--113268	2	49.0	2	72	18	61	46	0	0	53	1.00
114171--114210	14	2.9	14	85	3	55	2	12	27	57	1.48
114220--114300	31	2.6	31	96	0	144	45	17	12	24	1.82
116573--116648	35	2.2	35	90	0	116	39	22	1	36	1.63
117042--117285	126	1.9	128	88	3	375	36	15	12	35	1.85

Tables:   1

The End!