genome.fa.s2939.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002939.1 Hibiscus syriacus cultivar Beakdansim tig00006069_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49970

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
872--963	12	7.4	12	80	7	76	35	7	34	21	1.82
869--963	6	15.3	6	75	6	55	36	7	34	21	1.81
884--966	15	5.7	15	80	8	91	36	6	34	22	1.79
880--963	27	3.1	27	84	0	114	35	7	34	22	1.82
2415--3244	179	4.6	181	93	3	1407	34	15	16	33	1.89
2798--2826	13	2.1	14	93	6	51	41	13	13	31	1.84
2415--3244	356	2.3	359	93	3	1435	34	15	16	33	1.89
5796--5857	21	2.8	23	80	7	74	35	6	20	37	1.79
5818--5866	23	2.1	23	88	7	73	34	2	20	42	1.64
6215--6277	23	2.7	23	90	0	90	36	6	19	38	1.77
6215--6287	23	3.2	23	86	3	85	35	5	19	39	1.75
5697--6703	427	2.4	422	97	2	1880	40	8	13	38	1.75
6642--6705	22	2.9	22	90	2	92	35	7	18	37	1.80
14611--14648	3	12.7	3	100	0	76	34	0	0	65	0.93
14880--14923	23	1.9	23	81	9	54	45	2	9	43	1.48
18601--18642	16	2.7	15	82	7	57	28	23	9	38	1.86
20014--20103	43	2.1	43	87	2	137	27	6	16	48	1.71
20274--20367	42	2.3	41	80	7	100	34	8	14	42	1.77
20699--20743	19	2.4	19	85	7	56	46	0	2	51	1.13
20704--20765	30	2.2	27	83	13	72	46	1	3	48	1.28
23852--23880	2	14.5	2	100	0	58	48	0	0	51	1.00
25890--25966	24	3.2	24	79	0	82	59	15	14	10	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27131--27161	14	2.2	14	100	0	62	58	0	6	35	1.24
31713--31769	19	3.0	19	79	5	62	50	15	17	15	1.78
34082--34145	31	2.1	31	88	2	94	32	1	6	59	1.32
34246--34304	31	1.9	30	86	3	82	66	5	0	28	1.13
37218--37252	18	2.0	18	88	5	54	37	0	2	60	1.12
40230--40343	20	5.5	20	70	13	70	45	27	1	25	1.63
40981--41140	43	3.7	43	80	2	160	22	20	16	41	1.90
41077--41161	43	2.0	43	83	4	109	21	24	17	36	1.94
40991--41158	86	1.9	86	80	5	196	21	20	16	41	1.91

Tables:   1

The End!