Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002940.1 Hibiscus syriacus cultivar Beakdansim tig00006070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47938

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
373--407
12
2.7
13
91
8
54
0
11
0
88
0.51
373--408
13
2.7
13
86
4
54
0
11
0
88
0.50
7101--7141
9
4.2
10
78
15
50
78
2
2
17
0.98
7101--7141
19
2.2
19
86
8
57
78
2
2
17
0.98
7254--7318
34
2.0
33
82
11
80
70
4
3
21
1.19
7257--7352
38
2.6
36
76
15
106
71
3
5
19
1.18
7387--7465
36
2.3
35
82
8
99
67
3
3
25
1.25
7506--7566
21
2.9
22
83
7
74
62
0
3
34
1.12
7500--7554
29
2.0
29
85
7
78
58
0
3
38
1.16
7529--7566
20
1.9
20
89
10
60
68
0
0
31
0.90
8891--9000
36
3.1
36
75
5
116
39
14
20
25
1.91
9014--9072
30
2.0
30
83
12
77
33
11
15
38
1.84
9058--9225
36
4.9
35
66
14
98
38
14
20
26
1.91
9035--9404
101
3.7
101
82
3
388
38
13
18
28
1.90
9185--9708
167
3.1
167
93
1
856
40
12
17
29
1.86
9360--9575
102
2.1
102
83
5
278
41
12
18
27
1.86
9425--9504
37
2.2
36
84
2
97
42
13
18
25
1.87
9462--9626
65
2.5
65
86
3
217
40
11
19
29
1.86
9856--10164
105
2.9
104
84
1
375
22
19
23
33
1.97
9856--10177
106
3.0
105
84
1
394
22
19
24
34
1.97
11762--11899
69
2.0
69
92
0
231
24
15
23
36
1.93
11971--12011
13
3.2
13
86
6
57
2
14
2
80
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11981--12027
10
4.5
10
84
10
58
2
14
0
82
0.75
15186--15232
17
2.7
17
81
12
60
72
0
12
14
1.13
15330--15354
13
1.9
13
100
0
50
80
0
8
12
0.92
15489--15534
2
23.0
2
89
8
67
50
0
4
45
1.21
15489--15546
30
1.9
30
89
0
89
55
0
3
41
1.17
15498--15558
20
2.9
21
83
9
63
60
0
3
36
1.13
15520--15596
21
3.7
20
73
23
61
66
0
3
29
1.10
23457--23732
74
3.7
73
79
10
256
28
11
10
48
1.73
28387--28411
13
1.9
13
100
0
50
40
12
24
24
1.88
29184--29255
37
1.9
37
97
0
135
18
19
12
50
1.78
32174--32205
13
2.5
13
100
0
64
28
21
25
25
1.99
34452--34503
26
2.0
26
100
0
104
26
23
15
34
1.94
38380--38446
2
34.0
2
85
8
75
41
1
4
52
1.31
43002--43051
20
2.5
20
96
0
91
22
14
32
32
1.93
43800--43832
17
1.9
17
93
0
57
36
3
6
54
1.41
45020--45053
18
1.9
17
88
5
50
20
5
5
67
1.33

Tables:   1

The End!