Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002941.1 Hibiscus syriacus cultivar Beakdansim tig00006071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61528

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--117
6
19.8
6
94
3
211
48
17
0
34
1.47
1009--1050
12
3.2
13
80
10
50
54
7
0
38
1.28
6012--6129
34
3.3
35
87
7
166
45
20
2
31
1.64
9401--9432
15
2.1
15
94
0
55
6
25
15
53
1.65
10612--10730
35
3.3
36
89
5
179
44
18
5
31
1.71
13361--13456
34
2.8
35
90
6
151
23
12
18
44
1.84
17423--17485
21
3.1
20
79
9
65
69
3
3
23
1.17
17534--17578
20
2.2
20
80
0
54
35
6
2
55
1.38
17565--17787
27
8.1
27
76
14
217
47
7
2
43
1.43
17585--17770
54
3.5
52
88
8
250
47
8
2
41
1.47
17578--17779
24
7.6
24
76
18
179
47
7
2
42
1.45
17566--17787
83
2.7
81
79
12
238
47
7
2
43
1.43
17755--17839
44
1.9
45
88
7
129
44
5
3
45
1.45
18523--18558
13
2.6
15
79
20
51
27
13
0
58
1.36
18541--18586
19
2.4
20
89
7
69
30
10
4
54
1.55
20490--20603
40
2.8
40
90
0
165
31
14
20
34
1.92
29352--29752
20
17.6
20
65
22
118
23
23
9
43
1.82
29338--29757
46
9.1
46
91
0
651
23
22
9
44
1.82
30131--30351
95
2.3
95
83
5
261
24
23
16
35
1.94
36398--36884
20
21.7
20
69
20
254
23
23
9
43
1.83
36385--36910
46
11.6
46
90
2
805
24
22
9
43
1.83
36987--37018
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37347--37530
95
1.9
95
86
4
264
26
22
15
35
1.94
37347--37571
95
2.4
95
81
8
246
26
22
16
35
1.94
52203--52235
5
6.6
5
100
0
66
21
0
57
21
1.41
53563--54064
258
1.9
256
93
4
857
34
11
8
45
1.71
61039--61079
21
1.9
22
85
14
59
26
19
14
39
1.90

Tables:   1

The End!