Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002942.1 Hibiscus syriacus cultivar Beakdansim tig00006072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78856
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Found at i:3208 original size:17 final size:16
Alignment explanation
Indices: 3188--3227 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
3178 TGTTATTATA
3188 ATTATT-TT-ATATTT
1 ATTATTATTAATATTT
3202 ATTATTATTAATATTAT
1 ATTATTATTAATATT-T
3219 ATTA-TATTA
1 ATTATTATTA
3228 TTTATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.26
15 2 0.09
16 10 0.43
17 5 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTATTAATATTT
Found at i:3217 original size:32 final size:31
Alignment explanation
Indices: 3159--3228 Score: 79
Period size: 32 Copynumber: 2.3 Consensus size: 31
3149 TTTTTATTTA
**
3159 TATTTT-TATTTATTATAAATGTTATTATAAT
1 TATTTTATATTTATTATAAATAATATTAT-AT
* *
3190 TATTTTATATTTATTATTATTAATATTATAT
1 TATTTTATATTTATTATAAATAATATTATAT
*
3221 TATATTAT
1 TATTTTAT
3229 TTATTAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 15 0.45
32 18 0.55
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (31 bp):
TATTTTATATTTATTATAAATAATATTATAT
Found at i:5176 original size:2 final size:2
Alignment explanation
Indices: 5169--5208 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
5159 AAAACCCTAA
5169 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5209 TTAATATTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5721 original size:16 final size:16
Alignment explanation
Indices: 5689--5725 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
5679 TAGAAATTAA
5689 AATTTTGATTTTATTT
1 AATTTTGATTTTATTT
5705 AATTTATGATTTT-TTT
1 AATTT-TGATTTTATTT
5721 AATTT
1 AATTT
5726 CTTTCAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (16 bp):
AATTTTGATTTTATTT
Found at i:6632 original size:36 final size:36
Alignment explanation
Indices: 6588--6656 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
6578 CTATACACAA
* *
6588 AAAGATCCTGTTATATTAATACCAAAAGTATTCCAC
1 AAAGATCCTGTTAGATTAATACCAAAAGCATTCCAC
*
6624 AAAGATCCTGTTAGATTGATACCAAAAGCATTC
1 AAAGATCCTGTTAGATTAATACCAAAAGCATTC
6657 TATGGTAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29
Consensus pattern (36 bp):
AAAGATCCTGTTAGATTAATACCAAAAGCATTCCAC
Found at i:7266 original size:6 final size:7
Alignment explanation
Indices: 7225--7265 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
7215 TTTTCATACA
7225 TGCA-TT
1 TGCATTT
7231 TGCATTT
1 TGCATTT
7238 TGCATCTT
1 TGCAT-TT
*
7246 TACATTT
1 TGCATTT
7253 T-CATTT
1 TGCATTT
7259 TGCATTT
1 TGCATTT
7266 GTTGTTTGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
6 10 0.32
7 15 0.48
8 6 0.19
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.56
Consensus pattern (7 bp):
TGCATTT
Found at i:13826 original size:73 final size:74
Alignment explanation
Indices: 13707--13916 Score: 329
Period size: 73 Copynumber: 2.9 Consensus size: 74
13697 TTCAAATAGT
*
13707 AATTTATCTCACTTGAGATTGTTTTTCTTAAAAC-AAATTGC-GTCTCGCTTGAGACAGTTTCAC
1 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATT-CTGTCTCGCTTGAGACAGTTTCAC
13770 TCGAAACAAC
65 TCGAAACAAC
*
13780 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATT-TGTCTCGCTTGAGACAATTTCACT
1 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATTCTGTCTCGCTTGAGACAGTTTCACT
*
13844 CGAAACAAT
66 CGAAACAAC
* **
13853 AATTTATCTCACTTGAGATTTTTTTTCTTAAAACAAGCTTCT-TCTCGCTTGAGACAGTTTCACT
1 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATTCTGTCTCGCTTGAGACAGTTTCACT
13917 AGTAACAGAA
Statistics
Matches: 127, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
73 121 0.95
74 6 0.05
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (74 bp):
AATTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATTCTGTCTCGCTTGAGACAGTTTCACT
CGAAACAAC
Found at i:13887 original size:37 final size:36
Alignment explanation
Indices: 13707--13888 Score: 152
Period size: 37 Copynumber: 5.0 Consensus size: 36
13697 TTCAAATAGT
*
13707 AATTTATCTCACTTGAGATTGTTTTTCTTAAAAC-A
1 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
** * * ** **
13742 AATTGCGTCTCGCTTGAGA-CAGTTTCACTCGAAACAA
1 AATT-TATCTCACTTGAGATTA-TTTTTCTTAAAACAA
13779 CAATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
1 -AATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
* * ** ** **
13816 AATTTGTCTCGCTTGAGACAATTTCACTCGAAACAA
1 AATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
*
13852 TAATTTATCTCACTTGAGATTTTTTTTCTTAAAACAA
1 -AATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
13889 GCTTCTTCTC
Statistics
Matches: 107, Mismatches: 34, Indels: 10
0.71 0.23 0.07
Matches are distributed among these distances:
35 4 0.04
36 48 0.45
37 50 0.47
38 5 0.05
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (36 bp):
AATTTATCTCACTTGAGATTATTTTTCTTAAAACAA
Found at i:14175 original size:129 final size:122
Alignment explanation
Indices: 13945--14428 Score: 634
Period size: 122 Copynumber: 3.9 Consensus size: 122
13935 CACTCGATGG
* *
13945 ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATATGAAGAAGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* *
14010 ATAAGAAGAACTTGTTCAATTTTTTGCTCAATTCTATCACAGAAGGAGATAGATCAGCATCAAC
65 ATAAGAAGAACTTGTTCAACTTTTTGCT-GATTCTATCACAGAA-GAG--AGAT-AG-ATCAAC
*
14074 ATCAACATTTCCAGAGAAAATTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * *
14139 ATGAGAAGAACTTGTTCAACCTTTTGCATGACTCTATCACAGAAG-GAGATAGATCAAC
65 ATAAGAAGAACTTGTTCAACTTTTTGC-TGATTCTATCACAGAAGAGAGATAGATCAAC
* *
14197 ATCAATATTTCCA-AAAGTGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGAAA-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * *
14261 ATAAGAAGAACTTATTCAACATTTTGCGTGATTCTATCACAGAA-AGAGATAGATCAGC
65 ATAAGAAGAACTTGTTCAACTTTTTGC-TGATTCTATCACAGAAGAGAGATAGATCAAC
* * * * *
14319 ATCAACATTTCCAGAAGGATTTCATAATGATAAGAACTCATCTGACGAGGAAAAAGAAGTTCATA
1 ATCAACATTTCCAGAA-AAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* *
14384 ATGAGAAGAACTTCTTCAACTTTTTGCTAGATTAC-ATCACAGAAG
65 ATAAGAAGAACTTGTTCAACTTTTTGCT-GATT-CTATCACAGAAG
14429 GAAATAAATT
Statistics
Matches: 320, Mismatches: 27, Indels: 21
0.87 0.07 0.06
Matches are distributed among these distances:
121 2 0.01
122 110 0.34
123 99 0.31
124 3 0.01
125 4 0.01
127 1 0.00
128 1 0.00
129 99 0.31
130 1 0.00
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.26
Consensus pattern (122 bp):
ATCAACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
TAAGAAGAACTTGTTCAACTTTTTGCTGATTCTATCACAGAAGAGAGATAGATCAAC
Found at i:14628 original size:12 final size:12
Alignment explanation
Indices: 14613--14647 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
14603 TTTCATCCAT
14613 TTTTTATTTATA
1 TTTTTATTTATA
14625 TTTTTA-TTATTA
1 TTTTTATTTA-TA
14637 TTTTTATTTAT
1 TTTTTATTTAT
14648 TATAAATGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 3 0.14
12 15 0.71
13 3 0.14
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTTATTTATA
Found at i:14636 original size:3 final size:3
Alignment explanation
Indices: 14623--14721 Score: 96
Period size: 3 Copynumber: 33.7 Consensus size: 3
14613 TTTTTATTTA
* * * * * *
14623 TAT TTT TAT TAT TAT TTT TATT TAT TAT AAA TGT TAT TAT AAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
* *
14669 T-T TAT TA- TAT TAT TAT TAT TAA TAT TAT TCT TAT TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14714 TAT TAT TA
1 TAT TAT TA
14722 AATAATAAAT
Statistics
Matches: 76, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
2 6 0.08
3 67 0.88
4 3 0.04
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:15119 original size:17 final size:18
Alignment explanation
Indices: 15086--15119 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
15076 GCAGAAAACA
*
15086 AAGAGATGAACAATGACC
1 AAGAGATGAAAAATGACC
15104 AAGAGA-GAAAAATGAC
1 AAGAGATGAAAAATGAC
15120 AACCACCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.56, C:0.12, G:0.24, T:0.09
Consensus pattern (18 bp):
AAGAGATGAAAAATGACC
Found at i:15484 original size:29 final size:29
Alignment explanation
Indices: 15442--15501 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
15432 AGAGAGGGTG
*
15442 GAGCATTTTTATTCTCTCTCACTTAGAGA
1 GAGCATCTTTATTCTCTCTCACTTAGAGA
15471 GAGCATCTTTATTCTCTCTCACTTAGAGA
1 GAGCATCTTTATTCTCTCTCACTTAGAGA
15500 GA
1 GA
15502 ATGAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (29 bp):
GAGCATCTTTATTCTCTCTCACTTAGAGA
Found at i:15743 original size:2 final size:2
Alignment explanation
Indices: 15736--15782 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
15726 TTGACATAAT
15736 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15778 TA TA T
1 TA TA T
15783 TAGGTAAAAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:16579 original size:23 final size:23
Alignment explanation
Indices: 16553--16596 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
16543 TCTATTATGG
16553 TATTTAAAAATAAATAAATATCT
1 TATTTAAAAATAAATAAATATCT
* * *
16576 TATTTATAAATATATATATAT
1 TATTTAAAAATAAATAAATAT
16597 ATATATAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
TATTTAAAAATAAATAAATATCT
Found at i:16632 original size:17 final size:18
Alignment explanation
Indices: 16612--16650 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
16602 TAATAAAAAT
*
16612 TATTATA-TTCTTATTAA
1 TATTATATTTATTATTAA
16629 TATT-TATTTATTATTAA
1 TATTATATTTATTATTAA
16646 TATTA
1 TATTA
16651 AAGAAAAGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 2 0.11
17 17 0.89
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTATATTTATTATTAA
Found at i:16662 original size:139 final size:141
Alignment explanation
Indices: 16487--16745 Score: 344
Period size: 139 Copynumber: 1.8 Consensus size: 141
16477 GATTAAATAA
* * *
16487 TAATATTTATTTATTTTTAAATATTAAGAAATGACAGTCTTAAAATAACTAAACGTTCTATTATG
1 TAATATTTATTTATTATTAAATATTAAGAAAAGACAGTCTTAAAACAACTAAACGTTCTATTATG
* * *
16552 GTATTTAAAAATAAATAAATATCTTATTTA-TAAA-TATATATATATATATATAATAAAAATTAT
66 ATATTTAAAAATAAATAAATATCCTATTTACAAAACTATATATATATATATATAATAAAAATTAT
16615 TATATTCTTAT
131 TATATTCTTAT
* * * * *
16626 TAATATTTATTTATTATT-AATATTAAAGAAAAGACAGTCTTAAAGCAACTAGATGTTCTTTTCT
1 TAATATTTATTTATTATTAAATATT-AAGAAAAGACAGTCTTAAAACAACTAAACGTTCTATTAT
** *
16690 GATATTTTTAAATAAATAAATGTCCTATTTACAAAACCCTATATATATATATATAT
65 GATATTTAAAAATAAATAAATATCCTATTTACAAAA--CTATATATATATATATAT
16746 TTAATATTTT
Statistics
Matches: 101, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
138 6 0.06
139 75 0.74
140 3 0.03
143 17 0.17
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.43
Consensus pattern (141 bp):
TAATATTTATTTATTATTAAATATTAAGAAAAGACAGTCTTAAAACAACTAAACGTTCTATTATG
ATATTTAAAAATAAATAAATATCCTATTTACAAAACTATATATATATATATATAATAAAAATTAT
TATATTCTTAT
Found at i:24232 original size:21 final size:21
Alignment explanation
Indices: 24206--24246 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
24196 TCGTCCGAAG
*
24206 ATTTTTTGTTATTATTTTATA
1 ATTTTTTGTTATTATGTTATA
*
24227 ATTTTTTTTTATTATGTTAT
1 ATTTTTTGTTATTATGTTAT
24247 TTTATTTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (21 bp):
ATTTTTTGTTATTATGTTATA
Found at i:24251 original size:10 final size:10
Alignment explanation
Indices: 24238--24268 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24228 TTTTTTTTTA
24238 TTATGTTATT
1 TTATGTTATT
*
24248 TTATTTTATT
1 TTATGTTATT
24258 TTATGTTATT
1 TTATGTTATT
24268 T
1 T
24269 GTTGATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.06, T:0.74
Consensus pattern (10 bp):
TTATGTTATT
Found at i:33564 original size:8 final size:8
Alignment explanation
Indices: 33551--33578 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
33541 AGATTCTCCC
33551 ATATGTAT
1 ATATGTAT
33559 ATATGTAT
1 ATATGTAT
33567 ATATGTAT
1 ATATGTAT
33575 ATAT
1 ATAT
33579 ATCTTCTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (8 bp):
ATATGTAT
Found at i:37108 original size:18 final size:17
Alignment explanation
Indices: 37087--37262 Score: 105
Period size: 18 Copynumber: 9.9 Consensus size: 17
37077 AAAAAAGAAG
37087 AAAAGAAAAATGATAAAA
1 AAAAGAAAAATGA-AAAA
*
37105 AAAAGGAAAATG---AA
1 AAAAGAAAAATGAAAAA
* *
37119 AAAGGAAAAATGAGAGAA
1 AAAAGAAAAATGA-AAAA
*
37137 AAATGAAAAATGAAAAAA
1 AAAAGAAAAATG-AAAAA
37155 TGAAAAGAAAAAATGAAAAGA
1 --AAAAG-AAAAATGAAAA-A
*
37176 AAAA-AAAAGAAGAAAAGA
1 AAAAGAAAA-ATGAAAA-A
*
37194 AAAATGAAAAAATGATGAAA
1 AAAA-G-AAAAATGA-AAAA
*
37214 AAATGAAAAA-GAAAAA
1 AAAAGAAAAATGAAAAA
37230 TAAAAGAAAAAATG-AAAA
1 -AAAAG-AAAAATGAAAAA
*
37248 AAGAGAAAAAT-AAAA
1 AAAAGAAAAATGAAAA
37263 GGGGGGTTCA
Statistics
Matches: 127, Mismatches: 13, Indels: 38
0.71 0.07 0.21
Matches are distributed among these distances:
14 12 0.09
16 12 0.09
17 14 0.11
18 53 0.42
19 7 0.06
20 15 0.12
21 14 0.11
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.09
Consensus pattern (17 bp):
AAAAGAAAAATGAAAAA
Found at i:37119 original size:25 final size:25
Alignment explanation
Indices: 37075--37257 Score: 164
Period size: 25 Copynumber: 7.2 Consensus size: 25
37065 AAAAGAGATG
37075 AAAAAAAAGAAGAAAA-GAAAAATGA
1 AAAAAAAAGAA-AAAATGAAAAATGA
* *
37100 TAAAAAAAAG-GAAAATGAAAAA-GG
1 -AAAAAAAAGAAAAAATGAAAAATGA
**
37124 AAAAATGAGAGAAAAATGAAAAATGAA
1 AAAAAAAAGA-AAAAATGAAAAATG-A
37151 AAAATGAAAAGAAAAAATG-AAAA-GA
1 AAAA--AAAAGAAAAAATGAAAAATGA
37176 AAAAAAAAGAAGAAAA-GAAAAATGA
1 AAAAAAAAGAA-AAAATGAAAAATGA
* *
37201 AAAAATGATGAAAAAATGAAAAA-GA
1 AAAAA-AAAGAAAAAATGAAAAATGA
*
37226 AAAATAAAAGAAAAAATGAAAAAAGA
1 AAAA-AAAAGAAAAAATGAAAAATGA
*
37252 GAAAAA
1 AAAAAA
37258 TAAAAGGGGG
Statistics
Matches: 130, Mismatches: 13, Indels: 29
0.76 0.08 0.17
Matches are distributed among these distances:
23 15 0.12
24 13 0.10
25 56 0.43
26 27 0.21
27 8 0.06
28 7 0.05
29 4 0.03
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (25 bp):
AAAAAAAAGAAAAAATGAAAAATGA
Found at i:37128 original size:32 final size:31
Alignment explanation
Indices: 37087--37153 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 31
37077 AAAAAAGAAG
* *
37087 AAAAGAAAAATGATAAAAAAAAGGAAAATGA
1 AAAAGAAAAATGAGAAAAAAAAGAAAAATGA
* *
37118 AAAAGGAAAAATGAGAGAAAAATGAAAAATGA
1 AAAA-GAAAAATGAGAAAAAAAAGAAAAATGA
37150 AAAA
1 AAAA
37154 ATGAAAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 4 0.13
32 27 0.87
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.09
Consensus pattern (31 bp):
AAAAGAAAAATGAGAAAAAAAAGAAAAATGA
Found at i:37196 original size:51 final size:51
Alignment explanation
Indices: 37075--37263 Score: 210
Period size: 51 Copynumber: 3.7 Consensus size: 51
37065 AAAAGAGATG
* *
37075 AAAA-AAAAGAAGAAAAGAAAAATGATAAAA-AAAAG-GAAAATGAAAAAGGA
1 AAAATAAAAGAA-AAAAGAAAAATGAAAAAATAAAAGAAAAAATGAAAAA-GA
* * *
37125 AAAATGAGAGAAAAATGAAAAATGAAAAAATGAAAAGAAAAAATG-AAAAGA
1 AAAATAAAAGAAAAAAGAAAAATGAAAAAAT-AAAAGAAAAAATGAAAAAGA
* *
37176 AAAA-AAAAGAAGAAAAGAAAAATGAAAAAAT-GATGAAAAAATGAAAAAGA
1 AAAATAAAAGAA-AAAAGAAAAATGAAAAAATAAAAGAAAAAATGAAAAAGA
*
37226 AAAATAAAAGAAAAAATGAAAAAAGAGAAAAATAAAAG
1 AAAATAAAAGAAAAAA-GAAAAATGA-AAAAATAAAAG
37264 GGGGGTTCAA
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
49 10 0.09
50 39 0.34
51 44 0.38
52 15 0.13
53 8 0.07
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (51 bp):
AAAATAAAAGAAAAAAGAAAAATGAAAAAATAAAAGAAAAAATGAAAAAGA
Found at i:37204 original size:8 final size:8
Alignment explanation
Indices: 37135--37262 Score: 80
Period size: 8 Copynumber: 16.4 Consensus size: 8
37125 AAAATGAGAG
37135 AAAAATG-
1 AAAAATGA
37142 AAAAATGA
1 AAAAATGA
37150 AAAAATG-
1 AAAAATGA
37157 -AAAA-GA
1 AAAAATGA
37163 AAAAATGA
1 AAAAATGA
37171 AAAGAA--A
1 AAA-AATGA
*
37178 AAAAAAGA
1 AAAAATGA
37186 AGAAAA-G-
1 A-AAAATGA
37193 AAAAATGAA
1 AAAAATG-A
37202 AAAATGATGA
1 AAAA--ATGA
37212 AAAAATGA
1 AAAAATGA
*
37220 AAAAGA-AA
1 AAAA-ATGA
*
37228 AATAAAAGA
1 AA-AAATGA
37237 AAAAATGA
1 AAAAATGA
37245 AAAAA-GA
1 AAAAATGA
37252 GAAAAAT-A
1 -AAAAATGA
37260 AAA
1 AAA
37263 GGGGGGTTCA
Statistics
Matches: 100, Mismatches: 3, Indels: 36
0.72 0.02 0.26
Matches are distributed among these distances:
5 1 0.01
6 10 0.10
7 22 0.22
8 43 0.43
9 16 0.16
10 5 0.05
11 3 0.03
ACGTcount: A:0.77, C:0.00, G:0.14, T:0.09
Consensus pattern (8 bp):
AAAAATGA
Found at i:37238 original size:101 final size:102
Alignment explanation
Indices: 37075--37263 Score: 269
Period size: 101 Copynumber: 1.9 Consensus size: 102
37065 AAAAGAGATG
* * *
37075 AAAAAAAAGAAGAAAAGAAAAATGATAAAAAAAAGGAAAATGAAAAAGGAAAAATGAGAG-AAAA
1 AAAAAAAAGAAGAAAAGAAAAATGATAAAAAAAAGAAAAATGAAAAAGGAAAAATAAAAGAAAAA
*
37139 ATGAAAAATGA-AAAAATGAAAAGAAAAAATGAAAAGA
66 ATGAAAAAAGAGAAAAAT-AAAAGAAAAAATGAAAAGA
* *
37176 AAAAAAAAGAAGAAAAGAAAAATGA-AAAAATGATGAAAAAATGAAAAA-GAAAAATAAAAGAAA
1 AAAAAAAAGAAGAAAAGAAAAATGATAAAAA-AAAG-AAAAATGAAAAAGGAAAAATAAAAGAAA
37239 AAATGAAAAAAGAGAAAAATAAAAG
64 AAATGAAAAAAGAGAAAAATAAAAG
37264 GGGGGTTCAA
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
100 5 0.06
101 37 0.47
102 30 0.38
103 6 0.08
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (102 bp):
AAAAAAAAGAAGAAAAGAAAAATGATAAAAAAAAGAAAAATGAAAAAGGAAAAATAAAAGAAAAA
ATGAAAAAAGAGAAAAATAAAAGAAAAAATGAAAAGA
Found at i:37247 original size:6 final size:6
Alignment explanation
Indices: 37074--37240 Score: 57
Period size: 6 Copynumber: 27.0 Consensus size: 6
37064 AAAAAGAGAT
* *
37074 GAAAAA -AAAGAA G-AAAA GAAAAA TGATAAAA -AAAAG GAAAAT GAAAAA
1 GAAAAA GAAA-AA GAAAAA GAAAAA -GA-AAAA GAAAAA GAAAAA GAAAAA
*
37122 GGAAAAA TG--AGA GAAAAA TGAAAAA TGAAAAA -ATGAAAA GAAAAA
1 -GAAAAA -GAAAAA GAAAAA -GAAAAA -GAAAAA GA--AAAA GAAAAA
* **
37167 -ATGAAAA GAAAAA AAAAGAA G-AAAA GAAAAA TGAAAAAA TGATGAA
1 GA--AAAA GAAAAA GAAA-AA GAAAAA GAAAAA -G-AAAAA -GAAAAA
* *
37213 -AAAAT GAAAAA GAAAAA -TAAAA GAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA GAAAAA
37241 ATGAAAAAAG
Statistics
Matches: 123, Mismatches: 16, Indels: 44
0.67 0.09 0.24
Matches are distributed among these distances:
4 1 0.01
5 22 0.18
6 51 0.41
7 36 0.29
8 13 0.11
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (6 bp):
GAAAAA
Found at i:37262 original size:13 final size:13
Alignment explanation
Indices: 37131--37263 Score: 70
Period size: 13 Copynumber: 10.2 Consensus size: 13
37121 AGGAAAAATG
37131 AGAGAAAAATGAAA
1 AGAGAAAAAT-AAA
37145 A-ATGAAAAAATGAAA
1 AGA-G-AAAAAT-AAA
*
37160 AGA-AAAAATGAA
1 AGAGAAAAATAAA
37172 A-AGAAAAA-AAA
1 AGAGAAAAATAAA
37183 AGAAGAAAAGA-AAA
1 AG-AGAAAA-ATAAA
*
37197 ATGA-AAAAAT-GA
1 A-GAGAAAAATAAA
*
37209 TGA-AAAAATGAAA
1 AGAGAAAAAT-AAA
37222 A-AGAAAAATAAA
1 AGAGAAAAATAAA
37234 AGA-AAAAATGAAAAA
1 AGAGAAAAAT---AAA
37249 AGAGAAAAATAAA
1 AGAGAAAAATAAA
37262 AG
1 AG
37264 GGGGGTTCAA
Statistics
Matches: 96, Mismatches: 6, Indels: 35
0.70 0.04 0.26
Matches are distributed among these distances:
11 12 0.12
12 21 0.22
13 30 0.31
14 8 0.08
15 18 0.19
16 7 0.07
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (13 bp):
AGAGAAAAATAAA
Found at i:38582 original size:37 final size:37
Alignment explanation
Indices: 38532--38650 Score: 152
Period size: 37 Copynumber: 3.2 Consensus size: 37
38522 GTTTGACTTC
* *
38532 GAAACAAGTCAATCTTAAGCCTTCACGAAAGAGCAGT
1 GAAACAAATCAATCTTAAGCCTTCACGAAAGAGTAGT
*
38569 GAAACAATTCAATCTTAAGCCTTCAC-AGAAGAGTAGT
1 GAAACAAATCAATCTTAAGCCTTCACGA-AAGAGTAGT
* *
38606 GAAGCAAATC-ATCTATAAGCCTTCACGGAAGAGTAGT
1 GAAACAAATCAATCT-TAAGCCTTCACGAAAGAGTAGT
*
38643 GAAGCAAA
1 GAAACAAA
38651 CTCATTTTAT
Statistics
Matches: 74, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
36 5 0.07
37 69 0.93
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.20
Consensus pattern (37 bp):
GAAACAAATCAATCTTAAGCCTTCACGAAAGAGTAGT
Found at i:38800 original size:55 final size:55
Alignment explanation
Indices: 38666--39021 Score: 356
Period size: 55 Copynumber: 6.6 Consensus size: 55
38656 TTTATGAAGG
* ** *
38666 TCGAGTTCTATACTCTCTGAAATAATAGGGAGCGGACACGTTTGTT-AA-A--GA
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* *
38717 TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGTTTGTTGAAGATTGT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
*
38772 TCAAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGA----
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* ** * *
38823 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTACTAAAGATTAT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * * *
38878 TCGAGTCTTATACTCCCTGAACGAATAAGGAGCAGACACGTTTGTTGAAGATTGT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
* * * ** * * * *
38933 TCGAGTCTTATACTCCCTGAACGAATAGATAGTGAAC-CTGTTTGTCGAATG-TTTT
1 TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAC-GTTTGTTGAA-GATTGT
* *
38988 TCGAGTTCTATACTC-CATAAAGGAATAGGGAGCG
1 TCGAGTCCTATACTCTC-TGAAGGAATAGGGAGCG
39022 AACCCGTCTT
Statistics
Matches: 255, Mismatches: 39, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
51 87 0.34
52 2 0.01
53 1 0.00
54 2 0.01
55 162 0.64
56 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (55 bp):
TCGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATTGT
Found at i:38865 original size:106 final size:106
Alignment explanation
Indices: 38673--38929 Score: 370
Period size: 106 Copynumber: 2.4 Consensus size: 106
38663 AGGTCGAGTT
* * *
38673 CTATACTCTCTGAAATAATAGGGAGCGGACACGTTTGTTAAAGATCGAGTCTTATACTCTCTGAA
1 CTATACTCTCTGAAAGAATAGGGAGCGGACACGTTTGTTGAAGATCGAGTCCTATACTCTCTGAA
** * *
38738 GGAATAGGGAGCAGACACGTTTGTTGAAGATTGTTCAAGTC
66 GGAATAGGGAGCAGACACGTTTACTAAAGATTATTCAAGTC
*
38779 CTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTTGAAGATCGAGTCCTATACTCTCTGAA
1 CTATACTCTCTGAAAGAATAGGGAGCGGACACGTTTGTTGAAGATCGAGTCCTATACTCTCTGAA
* * *
38844 GGAATAGGGAGCGGACCCGTTTACTAAAGATTATTCGAGTC
66 GGAATAGGGAGCAGACACGTTTACTAAAGATTATTCAAGTC
* * * * *
38885 TTATACTCCCTGAACGAATAAGGAGCAGACACGTTTGTTGAAGAT
1 CTATACTCTCTGAAAGAATAGGGAGCGGACACGTTTGTTGAAGAT
38930 TGTTCGAGTC
Statistics
Matches: 135, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
106 135 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (106 bp):
CTATACTCTCTGAAAGAATAGGGAGCGGACACGTTTGTTGAAGATCGAGTCCTATACTCTCTGAA
GGAATAGGGAGCAGACACGTTTACTAAAGATTATTCAAGTC
Found at i:39259 original size:20 final size:19
Alignment explanation
Indices: 39222--39264 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
39212 TTATTTTTTA
39222 ATTTTATTTTGATTATGTT
1 ATTTTATTTTGATTATGTT
39241 ATTTTATTTT-ATTTTATGTT
1 ATTTTATTTTGA--TTATGTT
39261 ATTT
1 ATTT
39265 GTTGATAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.05
19 10 0.45
20 11 0.50
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (19 bp):
ATTTTATTTTGATTATGTT
Found at i:43628 original size:21 final size:21
Alignment explanation
Indices: 43602--43718 Score: 180
Period size: 21 Copynumber: 5.6 Consensus size: 21
43592 GGGTCTACGC
43602 GGTCCTTCGGGATAATACAGT
1 GGTCCTTCGGGATAATACAGT
* *
43623 GGTCCTTCAGGACAATACAGT
1 GGTCCTTCGGGATAATACAGT
*
43644 GATCCTTCGGGATAATACAGT
1 GGTCCTTCGGGATAATACAGT
* *
43665 GGTCCTTCGGGACAATACAGA
1 GGTCCTTCGGGATAATACAGT
*
43686 AGTCCTTCGGGATAATACAGT
1 GGTCCTTCGGGATAATACAGT
43707 GGTCCTTCGGGA
1 GGTCCTTCGGGA
43719 CAAATTTCAT
Statistics
Matches: 84, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 84 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (21 bp):
GGTCCTTCGGGATAATACAGT
Found at i:43663 original size:42 final size:42
Alignment explanation
Indices: 43603--43721 Score: 204
Period size: 42 Copynumber: 2.8 Consensus size: 42
43593 GGTCTACGCG
* *
43603 GTCCTTCGGGATAATACAGTGGTCCTTCAGGACAATACAG-T
1 GTCCTTCGGGATAATACAGTGGTCCTTCGGGACAATACAGAA
43644 GATCCTTCGGGATAATACAGTGGTCCTTCGGGACAATACAGAA
1 G-TCCTTCGGGATAATACAGTGGTCCTTCGGGACAATACAGAA
43687 GTCCTTCGGGATAATACAGTGGTCCTTCGGGACAA
1 GTCCTTCGGGATAATACAGTGGTCCTTCGGGACAA
43722 ATTTCATATG
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
41 1 0.01
42 72 0.97
43 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (42 bp):
GTCCTTCGGGATAATACAGTGGTCCTTCGGGACAATACAGAA
Found at i:48008 original size:21 final size:22
Alignment explanation
Indices: 47984--48027 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
47974 TGAAGCAGTA
47984 CTGTAGC-AGGGAATCAGTTCC
1 CTGTAGCAAGGGAATCAGTTCC
*
48005 CTGTAGCAAGGGAATCGGTTCC
1 CTGTAGCAAGGGAATCAGTTCC
48027 C
1 C
48028 CTCTGACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.23, C:0.25, G:0.30, T:0.23
Consensus pattern (22 bp):
CTGTAGCAAGGGAATCAGTTCC
Found at i:56378 original size:24 final size:24
Alignment explanation
Indices: 56351--56396 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
56341 ATGTTACTAT
56351 AATTATATAATT-AAATTAATTAAA
1 AATTATAT-ATTAAAATTAATTAAA
* *
56375 AATTTTATTTTAAAATTAATTA
1 AATTATATATTAAAATTAATTA
56397 TATTAGATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTATATATTAAAATTAATTAAA
Found at i:58204 original size:27 final size:27
Alignment explanation
Indices: 58166--58226 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
58156 CTAATTAATA
58166 TAAGGTAAATTAAGGCCTTTTCTAACT
1 TAAGGTAAATTAAGGCCTTTTCTAACT
58193 TAAGGTAAATTAAGGCCTTTTCTAACT
1 TAAGGTAAATTAAGGCCTTTTCTAACT
58220 TAAGGTA
1 TAAGGTA
58227 TCAAATTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.36
Consensus pattern (27 bp):
TAAGGTAAATTAAGGCCTTTTCTAACT
Found at i:58845 original size:24 final size:24
Alignment explanation
Indices: 58818--58869 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 24
58808 AAACTTAATT
58818 AAAATA-AAAAA-AAGTACAATAAAA
1 AAAATAGAAAAACAA-TAC-ATAAAA
58842 AAAATAGTAAAAACAATACATAAAA
1 AAAATAG-AAAAACAATACATAAAA
58867 AAA
1 AAA
58870 CTTGAAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.24
25 9 0.36
26 8 0.32
27 2 0.08
ACGTcount: A:0.77, C:0.06, G:0.04, T:0.13
Consensus pattern (24 bp):
AAAATAGAAAAACAATACATAAAA
Found at i:58852 original size:12 final size:13
Alignment explanation
Indices: 58821--58869 Score: 55
Period size: 12 Copynumber: 3.7 Consensus size: 13
58811 CTTAATTAAA
58821 ATAAAAAAAAGTAC
1 ATAAAAAAAA-TAC
58835 AATAAAAAAAATA-
1 -ATAAAAAAAATAC
* *
58848 GTAAAAACAATAC
1 ATAAAAAAAATAC
58861 ATAAAAAAA
1 ATAAAAAAA
58870 CTTGAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 10 0.34
13 7 0.24
14 2 0.07
15 10 0.34
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (13 bp):
ATAAAAAAAATAC
Found at i:59479 original size:115 final size:107
Alignment explanation
Indices: 59276--59571 Score: 371
Period size: 115 Copynumber: 2.7 Consensus size: 107
59266 TTTGTGCAAT
* * * **
59276 AAAATAAAAGTTAGTAGTTAGCAGAGTTCGAACCATAATAATGTGGGTCTTACCCCGGATTAGGT
1 AAAATAAAAGTTAGTGGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTACCCCGGATCGGGT
*
59341 CATCACAAGGTCGAATCGAATAATGCAAACAAATATATAAAAAAATAAA
66 CACCACAAGGTCGAATCGAATAATGCAAACAAATATAT------A-AAA
**
59390 ACAAATAAAAAATAGTGGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTACCCCGGATCGGG
1 A-AAATAAAAGTTAGTGGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTACCCCGGATCGGG
**
59455 TCACCACAAGGTCGAATCGAATAATTTAAACAAATATATAAAA
65 TCACCACAAGGTCGAATCGAATAATGCAAACAAATATATAAAA
* * * **
59498 AAAAT--AAGTTGGTGGTTGGCATAGTCTAAACCATAATAATGTGGATCTTACCCCGGATCGGGT
1 AAAATAAAAGTTAGTGGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTACCCCGGATCGGGT
59561 CACCACAAGGT
66 CACCACAAGGT
59572 TGAGTAATAG
Statistics
Matches: 164, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
105 62 0.38
107 4 0.02
108 4 0.02
109 1 0.01
114 1 0.01
115 92 0.56
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.24
Consensus pattern (107 bp):
AAAATAAAAGTTAGTGGTTAGCAGAGTCCGAACCATAATAATGTGGATCTTACCCCGGATCGGGT
CACCACAAGGTCGAATCGAATAATGCAAACAAATATATAAAA
Found at i:60232 original size:13 final size:13
Alignment explanation
Indices: 60202--60240 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
60192 CAAGCATACT
**
60202 AACACCCTAAATT
1 AACACCCTAAACC
*
60215 GACACCCTAAACC
1 AACACCCTAAACC
60228 AACACCCTAAACC
1 AACACCCTAAACC
60241 GACGTACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.44, C:0.41, G:0.03, T:0.13
Consensus pattern (13 bp):
AACACCCTAAACC
Found at i:62093 original size:24 final size:24
Alignment explanation
Indices: 62066--62112 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
62056 GCATGACATT
62066 GTACATAGATATTTTATACATCAA
1 GTACATAGATATTTTATACATCAA
*
62090 GTACATAGATGTTTTATACATCA
1 GTACATAGATATTTTATACATCA
62113 TCAGGAAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (24 bp):
GTACATAGATATTTTATACATCAA
Found at i:63924 original size:132 final size:130
Alignment explanation
Indices: 63643--63977 Score: 411
Period size: 132 Copynumber: 2.5 Consensus size: 130
63633 TGGCAATATT
* * * * *
63643 GATCCACCTCATGCTGTGATTGAATCGAACATAATGCCAGTGCTGATCTACCTCCTTCTGTGATA
1 GATCCACCTCATTCTGTGATGGAATCGAAGAT-ATGTCGGTGCTGATCTACCTCCTTCTGTGATA
* * ** * *
63708 GAAAT-GAGCAAAATGTGATGTTTTTCCAACTCCTTATGCGATGGATTTGAGTGAAATGAAAATG
65 G-AATCGAGCAAAAAGTGATATTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
63772 TC
129 TC
* *
63774 GATCCACATCATTCTGTGATGGAATCGAATGATATGTCGGTGCTGATCTACCTCATTCTGTGATA
1 GATCCACCTCATTCTGTGATGGAATCGAA-GATATGTCGGTGCTGATCTACCTCCTTCTGTGATA
* * * **
63839 GAATCGAGCAAAAAGTTGATATTGATGCAATTTCTTATGTTATGGATTTGAGCGAAATAAAAATG
65 GAATCGAGCAAAAAG-TGATATTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATG
63904 TC
129 TC
* * * * *
63906 GATCCACCTCCTTCTGTGATGGAATTGAACGAGATGTTGGTACTGATCTACCTCCTTCTGTGATA
1 GATCCACCTCATTCTGTGATGGAATCGAA-GATATGTCGGTGCTGATCTACCTCCTTCTGTGATA
63971 GAATCGA
65 GAATCGA
63978 CTAAAAAATA
Statistics
Matches: 175, Mismatches: 26, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
130 3 0.02
131 65 0.37
132 107 0.61
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (130 bp):
GATCCACCTCATTCTGTGATGGAATCGAAGATATGTCGGTGCTGATCTACCTCCTTCTGTGATAG
AATCGAGCAAAAAGTGATATTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAATGTC
Found at i:64069 original size:108 final size:108
Alignment explanation
Indices: 63880--64085 Score: 331
Period size: 108 Copynumber: 1.9 Consensus size: 108
63870 TTCTTATGTT
* * * **
63880 ATGGATTTGAGCGAAATAAAAATGTCGATCCACCTCCTTCTGTGATGGAATTGAACGAGATGTTG
1 ATGGATTTGAGCGAAATAAAAACGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATATCA
63945 GTACTGATCTACCTCCTTCTGTGATAGAATCGACTAAAAAATA
66 GTACTGATCTACCTCCTTCTGTGATAGAATCGACTAAAAAATA
* *
63988 ATGGATTTGAGTGAAATGAAAACGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATATCA
1 ATGGATTTGAGCGAAATAAAAACGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATATCA
**
64053 GTGTTGATCTACCTCCTTCTGTGATAGAATCGA
66 GTACTGATCTACCTCCTTCTGTGATAGAATCGA
64086 GAAAAAAAGT
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
108 89 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (108 bp):
ATGGATTTGAGCGAAATAAAAACGTCGATCCACCTCCTTCTGTGATGGAATCGAACGAGATATCA
GTACTGATCTACCTCCTTCTGTGATAGAATCGACTAAAAAATA
Found at i:65026 original size:54 final size:52
Alignment explanation
Indices: 64968--65072 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 52
64958 TATAGTTTTC
* *
64968 AAGAAACCCCT-AAAATTAGGCTTAGCTTCTTTTAAAAATTCATTTAAAAACATA
1 AAGAAACCCCTAAAAATTAGGCTTAG--T-TTCTAAAAACTCATTTAAAAACATA
*
65022 AAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAACTCATTTGAAAACAT
1 AAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAACTCATTTAAAAACAT
65073 CATGCCCGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
52 21 0.45
53 1 0.02
54 11 0.23
55 14 0.30
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.30
Consensus pattern (52 bp):
AAGAAACCCCTAAAAATTAGGCTTAGTTTCTAAAAACTCATTTAAAAACATA
Found at i:65199 original size:42 final size:41
Alignment explanation
Indices: 65070--65199 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 41
65060 CATTTGAAAA
* * *
65070 CATCATGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTAT
1 CATCATGCTCGAAAGACTTATAGATGGCCCGAAGGACTTAT
* * * * *
65111 CATCTTGCTCGAAAGACTTATAGATGACCCGAAGAATTTAAA
1 CATCATGCTCGAAAGACTTATAGATGGCCCGAAGGACTT-AT
* * *
65153 CATCATGCTCGAAAGATTTGCTA-ATGGCCCAAAGGACTTACT
1 CATCATGCTCGAAAGACTT-ATAGATGGCCCGAAGGACTTA-T
65195 CATCA
1 CATCA
65200 AGAAACCCTT
Statistics
Matches: 70, Mismatches: 16, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
41 33 0.47
42 35 0.50
43 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (41 bp):
CATCATGCTCGAAAGACTTATAGATGGCCCGAAGGACTTAT
Found at i:65703 original size:264 final size:263
Alignment explanation
Indices: 65063--65794 Score: 1040
Period size: 264 Copynumber: 2.8 Consensus size: 263
65053 AAAAACTCAT
* *
65063 TTGAAAACATCATGCCCGAAGGTCTTATAGATGGCCCGAAGGACTTATCATCTTGCTCGAAAGAC
1 TTGAAAACATCATGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGAC
* * * * *
65128 TTATAGATGACCCGAAGAATTTAAACATCATGCTCGAAAGATTTGCTAATGGCCCAAAGGACTTA
66 TTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAATTACTGATGGCCCAAAGGACTTA
*
65193 CTCATCAAGAAACCCTTGAAAATCAAGCTT-TTTTCTTAGTTGTCATCAAGGAACCCCTACATAT
131 CTCATCAAGAAACCCTTGAAAATCAAGCTTATTTTATTAGTTGTCATCAAGGAACCCCTACATAT
* * *
65257 CACGTTGGTCCCTCGAGTGAGGTGACGTTGATTCAACTCCATATATGATGAATCGAGTATCGAAA
196 CACGTTGGTCCCTCGAGTGAGGTGACGTTGATTCAAATCCATATATGATGAATCAAGTAGCGAAA
65322 ATG
261 ATG
* * * * * * *
65325 TTGAAAACATCCTGCCCAAAGGAT-TTATGGATGACCCGAAGGTCTTATTATTTTGCTCAAAAGT
1 TTGAAAACATCATGCCCGAAGG-TCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGA
* * * *
65389 CTTATAAATGGCCCGAAAGACTTAAGCATCATGCTCGAAAGACA-TACTGATGGCCCAAAGGACT
65 CTTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA-ATTACTGATGGCCCAAAGGACT
* * *
65453 TACTCATCAAGAAACCCTTGAAAATCAAGCTTATTTTTTTAGTTGTCATTAAGGAAACCCTACAT
129 TACTCATCAAGAAACCCTTGAAAATCAAGCTTATTTTATTAGTTGTCATCAAGGAACCCCTACAT
* * * * *
65518 ATCACGTTGGTCCCTTGAGTGAGGTGACGCTTGATTCAAATCTATATGTGATGAATCAAGTGGCT
194 ATCACGTTGGTCCCTCGAGTGAGGTGACG-TTGATTCAAATCCATATATGATGAATCAAGTAGCG
65583 AAAATG
258 AAAATG
* * *
65589 TTGAAAATATCATGCCCGAAGGTCTTATGGATGGCCTGAAGGACTTATCATCTTGCTCTAAAGAC
1 TTGAAAACATCATGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGAC
* * * * *
65654 TTACAGATGATCTGAAGGATTTACGCATCATGCTCGAACGAATTACTGATGGCCCGAAA-GACTT
66 TTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAATTACTGATGGCCC-AAAGGACTT
* *
65718 ACTCATCAAGAAACCCTTGAAAATCAAGCTCAGTTTATTAGTTGTCATCAAGGAACCCCTACATA
130 ACTCATCAAGAAACCCTTGAAAATCAAGCTTATTTTATTAGTTGTCATCAAGGAACCCCTACATA
65783 TCACGTTGGTCC
195 TCACGTTGGTCC
65795 ATCAAGCTTA
Statistics
Matches: 410, Mismatches: 53, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
262 139 0.34
263 60 0.15
264 208 0.51
265 3 0.01
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (263 bp):
TTGAAAACATCATGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCAAAAGAC
TTATAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGAATTACTGATGGCCCAAAGGACTTA
CTCATCAAGAAACCCTTGAAAATCAAGCTTATTTTATTAGTTGTCATCAAGGAACCCCTACATAT
CACGTTGGTCCCTCGAGTGAGGTGACGTTGATTCAAATCCATATATGATGAATCAAGTAGCGAAA
ATG
Found at i:67177 original size:28 final size:28
Alignment explanation
Indices: 67145--67208 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
67135 GATAAAAGGC
67145 TCAGGCTGACTTGGGAAAGTAATGTGTT
1 TCAGGCTGACTTGGGAAAGTAATGTGTT
* * * * *
67173 TCAGGTTAATTTGGGGAGGTAATGTGTT
1 TCAGGCTGACTTGGGAAAGTAATGTGTT
67201 TCAGGCTG
1 TCAGGCTG
67209 GATTCTTGCG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.22, C:0.09, G:0.34, T:0.34
Consensus pattern (28 bp):
TCAGGCTGACTTGGGAAAGTAATGTGTT
Found at i:67229 original size:15 final size:16
Alignment explanation
Indices: 67209--67243 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
67199 TTTCAGGCTG
*
67209 GATTCTTGCGTTC-TT
1 GATTCTAGCGTTCATT
67224 GATTCTAGCGTTCATT
1 GATTCTAGCGTTCATT
67240 GATT
1 GATT
67244 AAATGAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.14, C:0.17, G:0.20, T:0.49
Consensus pattern (16 bp):
GATTCTAGCGTTCATT
Found at i:70717 original size:18 final size:19
Alignment explanation
Indices: 70677--70717 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
70667 AACCGGGTGA
*
70677 TTTTAATAAAACATTTTAG
1 TTTTAATAAAACATTTGAG
*
70696 -TTTAATAAAATA-TTGAG
1 TTTTAATAAAACATTTGAG
70713 TTTTA
1 TTTTA
70718 GGGTCTGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.49
Consensus pattern (19 bp):
TTTTAATAAAACATTTGAG
Found at i:71592 original size:2 final size:2
Alignment explanation
Indices: 71585--71658 Score: 127
Period size: 2 Copynumber: 38.5 Consensus size: 2
71575 TTTTTAAAAC
71585 AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT A- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71625 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
71659 CCCCCATCCC
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
1 3 0.04
2 66 0.96
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:71928 original size:24 final size:24
Alignment explanation
Indices: 71838--71928 Score: 116
Period size: 24 Copynumber: 3.8 Consensus size: 24
71828 CATAAATCAG
* *
71838 GTCAAGTATCATATCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAA
71862 GTCAAGTAAT-AGATCAGAATCCAA
1 GTCAAGT-ATCAGATCAGAATCCAA
*
71886 G-CAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAA
71909 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
71929 TCAAATCGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
22 2 0.03
23 22 0.37
24 34 0.57
25 2 0.03
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAA
Found at i:74398 original size:7 final size:7
Alignment explanation
Indices: 74386--74425 Score: 53
Period size: 7 Copynumber: 5.4 Consensus size: 7
74376 TGGTCAACGC
74386 CGGTCAA
1 CGGTCAA
74393 CGGTCAA
1 CGGTCAA
74400 CGGGTCAA
1 C-GGTCAA
*
74408 CAGTCAA
1 CGGTCAA
74415 CGGGTCAA
1 C-GGTCAA
74423 CGG
1 CGG
74426 GTCGGGTCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
7 16 0.55
8 13 0.45
ACGTcount: A:0.28, C:0.28, G:0.33, T:0.12
Consensus pattern (7 bp):
CGGTCAA
Found at i:74407 original size:8 final size:8
Alignment explanation
Indices: 74377--74441 Score: 68
Period size: 8 Copynumber: 8.5 Consensus size: 8
74367 TCAAAGTTTT
74377 GGTCAACG
1 GGTCAACG
74385 CCGGTCAAC-
1 --GGTCAACG
74394 GGTCAACG
1 GGTCAACG
74402 GGTCAAC-
1 GGTCAACG
*
74409 AGTCAACG
1 GGTCAACG
74417 GGTCAACG
1 GGTCAACG
74425 GGT---CG
1 GGTCAACG
74430 GGTCAACG
1 GGTCAACG
74438 GGTC
1 GGTC
74442 GGGTCAACAG
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
5 5 0.10
7 13 0.27
8 23 0.48
10 7 0.15
ACGTcount: A:0.23, C:0.28, G:0.35, T:0.14
Consensus pattern (8 bp):
GGTCAACG
Found at i:74407 original size:15 final size:15
Alignment explanation
Indices: 74377--74425 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
74367 TCAAAGTTTT
74377 GGTCAACGCCGGTCAAC
1 GGTCAACG--GGTCAAC
74394 GGTCAACGGGTCAAC
1 GGTCAACGGGTCAAC
*
74409 AGTCAACGGGTCAAC
1 GGTCAACGGGTCAAC
74424 GG
1 GG
74426 GTCGGGTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 22 0.73
17 8 0.27
ACGTcount: A:0.27, C:0.29, G:0.33, T:0.12
Consensus pattern (15 bp):
GGTCAACGGGTCAAC
Found at i:74446 original size:18 final size:18
Alignment explanation
Indices: 74436--74495 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
74426 GTCGGGTCAA
74436 CGGGTCGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
74454 -----CGGGTCAACAGGT
1 CGGGTCGGGTCAACAGGT
* *
74467 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTCAACAGGT
74485 CGGGTCGGGTC
1 CGGGTCGGGTC
74496 GGGTTGTGAC
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
13 13 0.38
18 21 0.62
ACGTcount: A:0.15, C:0.22, G:0.47, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACAGGT
Found at i:74489 original size:13 final size:13
Alignment explanation
Indices: 74415--74472 Score: 98
Period size: 13 Copynumber: 4.5 Consensus size: 13
74405 CAACAGTCAA
74415 CGGGTCAACGGGT
1 CGGGTCAACGGGT
74428 CGGGTCAACGGGT
1 CGGGTCAACGGGT
*
74441 CGGGTCAACAGGT
1 CGGGTCAACGGGT
*
74454 CGGGTCAACAGGT
1 CGGGTCAACGGGT
74467 CGGGTC
1 CGGGTC
74473 GGGTAAACGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.17, C:0.24, G:0.43, T:0.16
Consensus pattern (13 bp):
CGGGTCAACGGGT
Found at i:76082 original size:17 final size:16
Alignment explanation
Indices: 76044--76082 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
76034 TAATTAAAAT
*
76044 AAAATAAAAAAGTACA
1 AAAATAAAAAAGTAAA
*
76060 ATAATAAAAACAGTAAA
1 AAAATAAAAA-AGTAAA
76077 AAAATA
1 AAAATA
76083 GTAAAAACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAGTAAA
Found at i:76456 original size:13 final size:13
Alignment explanation
Indices: 76438--76471 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
76428 AAAGTGCTAG
76438 AAAATAAAAAAAA
1 AAAATAAAAAAAA
76451 AAAATAAAAAAAA
1 AAAATAAAAAAAA
*
76464 GAAATAAA
1 AAAATAAA
76472 TTGCTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.03, T:0.09
Consensus pattern (13 bp):
AAAATAAAAAAAA
Found at i:76743 original size:120 final size:110
Alignment explanation
Indices: 76512--76821 Score: 282
Period size: 120 Copynumber: 2.7 Consensus size: 110
76502 TTGTGCAATA
* * * * * * ****
76512 AAATAAAAGTTAGTAGTTAGCAGATTCCGAACCATAATAATGTGGGTCTTACATTGGATCGGGTC
1 AAAT-AAA-TTAGTGGTTAACAGAGTCCAAACCATAATAATGTGGATATTACCCCAGATCGGGTC
* * *
76577 ATCACAAGTTCTAATCGAATAATGCAAACAAATATATATATAAAAATAAAACAAAT
64 ACCACAAGGTCGAATCGAATAATGCAAAC----A-A-ATATAAAAAT--AA-AAAT
* ** * * *
76633 AAAAAAAAATTAGTGGTTAACAGAGT-TGAACCATAATAATGTGTATCTTATCCCAGATCGGGTC
1 --AAATAAATTAGTGGTTAACAGAGTCCAAACCATAATAATGTGGATATTACCCCAGATCGGGTC
*
76697 ACCACAAGGTCGAATCGAATAATGTAAACAATATATAAAAAT-AAAAT
64 ACCACAAGGTCGAATCGAATAATGCAAACAA-ATATAAAAATAAAAAT
* *
76744 AAATAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGATATTACCCCAGATCGGGTCAC
1 AAATAAATTAGTGGTTAACAGAGTCCAAACCATAATAATGTGGATATTACCCCAGATCGGGTCAC
76809 CACAAGGTCGAAT
66 CACAAGGTCGAAT
76822 AAGAGAAACA
Statistics
Matches: 162, Mismatches: 24, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
109 21 0.13
110 48 0.30
111 4 0.02
112 1 0.01
115 12 0.07
116 1 0.01
120 55 0.34
121 14 0.09
122 3 0.02
123 3 0.02
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (110 bp):
AAATAAATTAGTGGTTAACAGAGTCCAAACCATAATAATGTGGATATTACCCCAGATCGGGTCAC
CACAAGGTCGAATCGAATAATGCAAACAAATATAAAAATAAAAAT
Found at i:76914 original size:28 final size:29
Alignment explanation
Indices: 76869--76931 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 29
76859 AATGAGATAA
*
76869 AATAAAAGTTAGTGGTTA-ATATGCAATAAAT
1 AATAAAAGTTA--GGTTAGAT-TGAAATAAAT
*
76900 AATAAAAGTTA-GTTAGCTTGAAATAAAT
1 AATAAAAGTTAGGTTAGATTGAAATAAAT
76928 AATA
1 AATA
76932 TAGCATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
28 17 0.59
29 1 0.03
31 11 0.38
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (29 bp):
AATAAAAGTTAGGTTAGATTGAAATAAAT
Done.