Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002943.1 Hibiscus syriacus cultivar Beakdansim tig00006074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111575

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156--192
19
1.9
19
94
0
65
24
18
40
16
1.90
156--199
19
2.5
17
85
10
54
25
15
43
15
1.87
364--475
39
2.8
40
82
9
131
24
16
25
34
1.95
423--476
20
2.7
20
97
0
99
25
16
25
31
1.97
364--478
59
1.9
61
84
8
155
23
15
24
36
1.94
465--515
20
2.5
20
83
0
66
17
25
19
37
1.94
6423--6464
21
2.0
21
86
13
61
69
2
23
4
1.20
7398--7443
22
2.1
21
84
4
56
43
2
2
52
1.25
10620--10700
37
2.2
38
78
13
87
51
3
1
43
1.27
11483--11558
38
2.0
37
94
2
134
38
23
6
31
1.81
12611--12641
11
2.7
11
95
5
53
38
6
19
35
1.77
17891--17915
11
2.3
11
100
0
50
40
8
28
24
1.83
17984--18028
20
2.2
20
92
0
72
24
20
28
26
1.99
18418--18447
15
2.0
15
93
0
51
20
30
26
23
1.98
18668--18707
20
1.9
21
85
10
55
35
37
12
15
1.85
20226--20299
29
2.5
30
80
10
82
29
17
2
50
1.60
21984--22016
17
1.9
17
93
0
57
36
0
0
63
0.95
25950--26010
21
2.7
23
82
10
72
29
3
8
59
1.43
26882--27109
20
11.2
20
74
12
162
42
21
18
17
1.90
26958--27094
42
3.3
42
90
2
224
40
23
19
16
1.91
26882--27094
42
5.2
40
78
11
220
41
22
19
16
1.90
27193--27247
6
9.5
6
98
2
96
30
52
16
0
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27744--27776
6
5.5
6
100
0
66
0
15
51
33
1.43
27879--28137
20
12.8
20
80
14
282
18
19
25
36
1.95
27872--28199
40
8.1
40
84
5
358
17
19
24
38
1.93
27872--28199
20
16.2
20
76
9
229
17
19
24
38
1.93
28991--29037
2
23.5
2
100
0
94
51
0
0
48
1.00
35791--35815
13
1.9
13
100
0
50
48
16
16
20
1.82
44025--44077
24
2.2
24
83
6
63
9
16
26
47
1.77
44035--44066
14
2.3
14
100
0
64
6
15
28
50
1.68
44036--44086
24
2.1
24
88
0
75
9
11
23
54
1.66
46131--46157
14
1.9
14
100
0
54
55
0
14
29
1.40
48439--48498
19
2.9
20
85
9
68
16
26
35
21
1.95
52311--52350
21
1.9
21
85
10
55
35
10
2
52
1.48
59954--60001
22
2.2
22
96
0
87
25
6
22
45
1.75
68818--68904
23
3.7
23
75
17
81
19
26
22
31
1.98
70298--70341
23
1.9
23
85
0
61
27
27
27
18
1.98
73880--73938
22
2.8
21
85
7
75
15
25
35
23
1.94
74965--75052
23
3.8
23
73
8
88
20
26
23
29
1.99
84919--84952
6
5.7
6
89
10
52
85
14
0
0
0.60
85543--85580
20
1.9
20
84
10
51
44
2
7
44
1.47
89404--89448
21
2.1
21
88
8
65
46
28
2
22
1.63
97771--97831
2
30.5
2
100
0
122
49
0
0
50
1.00
104784--104832
25
2.0
25
87
0
71
51
0
2
46
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108410--108441
12
2.8
12
95
4
57
21
37
6
34
1.79
108499--108609
31
3.6
31
85
7
136
35
21
17
26
1.95
111112--111136
11
2.3
11
100
0
50
40
0
0
60
0.97

Tables:   1

The End!