genome.fa.s2944.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002944.1 Hibiscus syriacus cultivar Beakdansim tig00006076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81769

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
812--872	24	2.5	24	82	10	72	45	3	0	50	1.17
887--1065	30	5.8	30	70	19	118	49	4	3	42	1.41
941--1007	14	4.8	14	76	7	64	47	1	4	46	1.31
941--1035	42	2.3	42	85	10	140	49	3	3	44	1.34
1077--1129	21	2.5	21	84	0	70	45	5	9	39	1.60
1224--1370	20	7.9	20	66	23	72	42	10	5	42	1.62
1170--1337	53	3.1	54	79	16	172	42	8	6	41	1.62
1275--1370	38	2.6	37	82	11	99	42	10	5	41	1.61
1326--1355	10	3.0	10	95	0	51	50	6	0	43	1.28
1158--1351	53	3.7	49	80	13	142	42	9	6	41	1.63
1281--1370	18	4.8	18	70	22	51	42	10	5	42	1.61
1412--1460	14	3.5	14	85	0	71	24	0	36	38	1.56
1394--1460	28	2.4	27	87	7	91	25	0	32	41	1.56
1562--1695	22	6.0	23	68	16	66	42	3	3	50	1.38
1570--1793	2	115.0	2	64	22	50	44	3	4	48	1.39
1514--1682	60	2.6	64	83	12	202	43	4	2	49	1.37
1570--1672	36	3.2	31	75	19	95	42	2	2	51	1.31
1631--1708	13	6.5	13	74	15	78	38	3	5	52	1.42
1595--1726	26	4.8	26	73	18	99	43	3	3	48	1.39
1712--1768	18	3.2	19	80	9	57	47	1	5	45	1.35
1883--2582	211	3.3	212	85	6	973	30	10	8	50	1.67
14813--14864	19	2.7	19	100	0	104	25	17	13	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15038--15099	21	2.8	23	79	15	69	48	0	0	51	1.00
15127--15208	25	3.3	22	71	23	56	46	0	1	52	1.08
15156--15207	24	2.2	24	87	12	74	50	0	0	50	1.00
15224--15391	90	1.9	86	80	9	196	50	4	0	45	1.23
18805--18888	44	1.9	44	85	4	116	34	13	15	36	1.86
19094--19152	21	2.8	21	89	0	91	52	18	6	22	1.68
22041--22158	41	2.9	41	83	1	121	40	12	14	32	1.84
22053--22158	41	2.6	41	84	0	131	38	13	15	33	1.86
35964--36236	136	2.0	138	91	1	451	33	11	16	38	1.84
38608--38633	2	13.0	2	100	0	52	50	0	0	50	1.00
44799--44925	44	3.2	44	66	32	129	25	1	13	59	1.44
44796--45011	76	2.9	75	91	2	317	28	0	12	57	1.42
45612--45659	16	2.9	16	80	20	55	22	0	4	72	1.01
45785--45827	22	2.0	22	81	9	52	51	18	2	27	1.59
47977--48120	64	2.2	65	86	4	204	34	18	21	26	1.96
48127--48164	20	1.9	20	88	0	58	34	18	21	26	1.96
48457--48496	17	2.4	16	87	4	53	27	2	22	47	1.64
49304--49545	29	8.6	27	85	6	250	35	2	16	45	1.62
49356--49545	28	6.8	27	88	5	254	35	2	16	45	1.59
49356--49545	57	3.4	55	89	4	256	35	2	16	45	1.59
50560--50629	31	2.2	32	87	5	99	12	18	32	35	1.89
51506--51557	25	2.1	25	100	0	104	23	15	28	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53684--53872	28	6.8	28	93	2	292	33	2	17	46	1.60
53684--53872	83	2.2	83	93	3	317	33	2	17	46	1.60
53684--53872	55	3.4	55	93	3	299	33	2	17	46	1.60
54887--54956	31	2.2	32	85	5	90	12	20	32	34	1.90
55638--55762	31	4.0	31	78	13	105	29	17	20	32	1.95
55691--55775	31	2.8	31	83	5	84	25	18	23	31	1.97
59259--59296	20	1.9	20	88	0	58	34	18	21	26	1.96
59589--59628	17	2.4	16	87	4	53	27	2	22	47	1.64
59855--59955	31	3.2	31	78	17	111	32	17	16	32	1.93
64903--64971	20	3.7	20	70	23	69	21	4	5	68	1.29
66251--66307	29	2.0	28	82	3	69	26	3	1	68	1.15
71638--71688	24	2.1	24	96	0	93	39	23	15	21	1.92
77371--77578	74	2.8	75	86	4	260	28	1	12	57	1.44
78174--78216	17	2.6	17	85	3	52	27	0	2	69	1.00
79374--79450	27	2.8	27	76	11	68	49	7	0	42	1.31
79652--79699	22	2.2	22	84	0	60	58	2	2	37	1.22
79797--79840	19	2.4	18	81	7	52	29	6	0	63	1.20

Tables:   1

The End!