Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002945.1 Hibiscus syriacus cultivar Beakdansim tig00006077_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68103

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3662--3711
15
3.3
16
78
10
61
62
20
8
10
1.52
3861--3889
12
2.4
12
100
0
58
17
27
24
31
1.97
7813--7858
11
4.1
11
83
10
58
13
10
6
69
1.35
12376--12418
23
1.9
22
90
4
68
13
11
4
69
1.33
15120--15162
21
2.0
21
90
0
68
16
23
20
39
1.92
18305--18371
23
2.9
23
79
0
89
31
25
23
19
1.98
18762--18797
2
18.0
2
100
0
72
50
0
0
50
1.00
18858--18885
2
14.0
2
100
0
56
50
0
0
50
1.00
19985--20122
64
2.2
64
81
7
156
24
21
19
34
1.97
23545--23604
23
2.6
23
83
0
84
33
25
25
16
1.96
23999--24038
2
20.0
2
100
0
80
50
0
0
50
1.00
24098--24137
2
20.0
2
100
0
80
50
0
0
50
1.00
26633--26669
19
1.9
19
100
0
74
40
16
5
37
1.71
31497--31549
25
2.1
25
96
0
97
28
33
18
18
1.95
31667--32459
273
2.9
272
82
3
837
25
19
15
40
1.90
33051--33100
19
2.6
19
78
6
57
38
2
2
58
1.21
33220--33317
31
3.2
31
78
15
96
42
2
1
54
1.19
43023--43071
6
8.7
6
80
13
59
2
16
0
81
0.78
43024--43071
17
2.9
17
84
3
71
2
16
0
81
0.79
43023--43071
23
2.2
22
88
3
71
2
16
0
81
0.78
43021--43081
18
3.3
17
72
24
52
1
16
0
81
0.76
43119--43150
7
4.7
7
92
7
57
0
12
0
87
0.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43053--43184
69
1.9
71
82
6
171
12
22
9
55
1.65
49419--49456
19
1.9
20
89
10
60
71
5
7
15
1.28
52738--52815
29
2.7
29
84
5
88
76
10
1
11
1.07
52738--52820
14
5.8
15
74
20
63
77
9
1
12
1.06
52760--52814
7
7.7
7
78
11
58
76
12
1
9
1.10
52760--52815
15
3.9
15
78
19
57
76
12
1
8
1.08
52760--52814
13
3.9
14
79
13
58
76
12
1
9
1.10
52752--52815
7
8.5
8
77
18
50
76
12
1
9
1.08
52886--52951
34
1.9
34
100
0
132
43
21
9
25
1.81
55245--55336
33
2.8
33
89
0
139
50
19
1
29
1.55
57136--57173
13
2.9
13
96
0
67
23
13
0
63
1.30
57181--57312
36
3.7
36
91
4
223
34
15
10
39
1.82
58114--58192
34
2.3
34
95
0
122
51
7
13
26
1.68
59314--59343
14
2.1
14
93
0
51
43
3
26
26
1.70
59980--60005
2
13.0
2
100
0
52
50
0
0
50
1.00
62360--62452
2
46.5
2
97
0
159
50
3
0
46
1.17
63538--63578
14
2.9
15
82
7
50
56
0
2
41
1.13
65922--65975
25
2.2
24
77
9
56
35
1
3
59
1.26
65927--66277
183
1.9
183
87
8
514
44
4
8
42
1.55
67798--67886
25
3.6
24
70
19
67
39
1
1
58
1.13
67882--67980
28
3.4
29
70
14
71
45
2
2
50
1.24

Tables:   1

The End!