Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002946.1 Hibiscus syriacus cultivar Beakdansim tig00006078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73163

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18830--18888
30
2.0
30
96
0
109
30
5
18
45
1.71
18971--19013
21
2.0
21
90
0
68
23
32
18
25
1.97
19001--19104
46
2.4
44
76
9
113
29
28
17
24
1.97
20387--20434
19
2.5
20
82
3
62
52
6
12
29
1.63
21703--21762
30
2.0
30
93
0
102
31
5
18
45
1.71
24989--25032
20
2.4
18
85
14
56
25
22
11
40
1.87
25000--25039
20
2.0
20
95
0
71
22
32
10
35
1.87
26888--26921
13
2.8
12
87
12
52
47
0
0
52
1.00
27622--27664
2
21.5
2
100
0
86
48
0
0
51
1.00
31090--31133
20
2.4
18
85
14
56
25
22
11
40
1.87
31101--31140
20
2.0
20
95
0
71
22
32
10
35
1.87
31726--31767
14
3.1
14
83
10
52
78
0
4
16
0.91
31896--31970
23
3.3
23
73
17
77
72
0
5
22
1.05
33205--33231
3
9.0
3
100
0
54
66
0
0
33
0.92
33615--34382
105
7.3
105
97
0
1419
23
18
25
32
1.97
41772--41820
20
2.3
22
75
13
57
16
20
2
61
1.44
45748--45789
14
3.1
14
83
10
52
78
0
4
16
0.91
45920--45993
21
3.4
22
76
16
82
71
0
5
22
1.06
46018--46082
22
3.0
21
71
18
53
58
7
1
32
1.36
47235--47261
3
9.0
3
100
0
54
66
0
0
33
0.92
49083--49116
13
2.8
12
87
12
52
47
0
0
52
1.00
55901--55952
21
2.5
21
87
0
68
21
21
30
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56109--56213
46
2.3
46
91
1
167
32
18
6
42
1.76
56621--56690
35
2.0
36
94
2
124
22
31
28
17
1.96
61421--61461
12
3.4
12
86
0
55
51
9
24
14
1.72
61421--61459
8
4.9
8
90
0
60
51
10
25
12
1.71
66300--66406
56
1.9
56
82
3
135
40
2
21
35
1.68

Tables:   1

The End!