Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002947.1 Hibiscus syriacus cultivar Beakdansim tig00006081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56556

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--943
4
240.8
4
88
6
1326
22
1
26
49
1.59
2132--2179
11
4.1
11
80
15
51
6
14
4
75
1.16
2732--2770
20
2.0
20
89
0
60
38
15
15
30
1.88
3949--4006
30
1.9
30
96
0
107
62
12
15
10
1.55
5959--6007
25
2.0
24
84
15
64
57
10
4
28
1.50
6256--6344
30
3.1
27
79
7
88
61
3
14
20
1.47
6256--6344
28
3.1
28
76
9
81
61
3
14
20
1.47
7670--7711
3
14.0
3
100
0
84
66
0
0
33
0.92
10169--10217
14
3.6
13
86
8
71
55
2
0
42
1.11
10194--10233
18
2.2
19
95
4
73
60
0
0
40
0.97
10180--10221
3
14.0
3
80
9
50
59
2
0
38
1.10
10494--11020
76
6.9
76
97
1
957
34
21
21
22
1.97
10494--11020
151
3.4
152
96
2
957
34
21
21
22
1.97
10363--11020
227
2.8
229
93
4
1113
33
21
21
23
1.97
11700--11779
22
3.6
22
72
0
79
40
12
12
35
1.81
14543--14908
93
4.2
89
83
11
451
36
21
13
28
1.92
14674--14910
82
2.9
82
97
0
447
37
22
13
26
1.92
23199--23246
3
16.0
3
82
8
62
60
2
0
37
1.09
23245--23278
18
2.0
18
88
11
54
73
0
2
23
0.97
23245--23278
17
2.1
16
88
5
50
73
0
2
23
0.97
27699--27849
64
2.3
64
83
6
180
34
19
17
29
1.94
28503--28567
31
2.1
31
85
0
85
24
18
23
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28526--28617
30
3.0
30
85
1
112
22
20
25
31
1.98
28552--28625
30
2.5
30
88
0
112
25
20
25
28
1.99
30726--30783
17
3.3
19
72
18
54
53
0
5
41
1.23
31612--31645
15
2.3
15
89
0
50
50
35
2
11
1.54
35841--35888
13
3.7
13
91
0
78
31
20
14
33
1.93
35867--36032
85
2.0
85
83
4
210
31
20
18
30
1.96
41452--41513
31
2.0
31
100
0
124
35
16
9
38
1.81
44302--44403
21
4.9
21
90
0
141
39
9
22
28
1.86
45807--45855
19
2.5
20
77
6
57
69
8
6
16
1.33
46129--46189
15
4.1
16
70
19
51
60
0
14
24
1.34
49256--49558
154
2.0
152
82
7
371
33
16
9
40
1.81
50494--50543
24
2.1
24
81
7
57
34
6
14
46
1.69
51934--51985
23
2.3
23
82
0
77
26
21
19
32
1.97

Tables:   1

The End!