genome.fa.s2948.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002948.1 Hibiscus syriacus cultivar Beakdansim tig00006084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40900

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7203--7245	22	2.0	22	85	0	59	48	4	2	44	1.36
7281--7329	25	2.0	25	87	0	71	46	2	8	42	1.45
7304--7347	16	2.6	18	82	14	65	47	2	4	45	1.35
7477--7509	14	2.3	15	94	5	59	18	0	3	78	0.87
12632--12774	22	6.5	23	81	15	83	38	2	0	58	1.13
12672--12778	16	7.1	14	90	6	72	43	0	0	55	1.06
12696--12780	2	42.5	2	95	4	154	48	1	0	50	1.08
12900--12950	16	3.2	17	78	10	54	23	3	0	72	1.01
12895--12950	17	3.2	17	78	14	53	23	3	0	73	0.99
13053--13098	17	2.8	16	81	18	58	15	13	0	71	1.14
13155--13218	26	2.4	28	76	10	71	14	4	4	76	1.11
16278--16331	14	4.2	13	78	21	60	77	3	16	1	1.00
16273--16331	13	4.4	13	81	10	66	76	5	16	1	1.05
16281--16331	27	1.9	27	92	4	86	76	3	17	1	1.03
16406--16542	69	2.0	69	91	2	222	37	23	14	24	1.92
18007--18078	37	1.9	37	88	0	108	26	20	13	38	1.90
18094--18178	37	2.3	37	89	2	127	24	18	14	42	1.88
18007--18383	102	3.7	101	86	1	441	29	18	12	39	1.88
18196--18453	36	7.3	36	78	10	255	27	18	13	40	1.88
18372--18436	21	3.4	21	68	24	70	24	23	12	40	1.89
18303--18453	73	2.1	73	87	1	214	25	20	14	39	1.90
18196--18511	174	1.8	174	86	4	458	27	18	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18406--18577	65	2.6	67	82	8	208	29	21	9	39	1.84
19265--19469	111	1.8	111	87	2	304	35	22	19	22	1.96
20890--20929	14	2.7	14	84	7	53	32	2	0	65	1.06
20910--20959	23	2.1	22	82	10	55	40	6	4	50	1.46
20984--21120	18	8.0	18	71	14	87	26	5	0	67	1.16
20956--21120	39	4.0	43	70	18	122	26	6	1	66	1.23
21015--21101	45	2.0	43	84	11	113	25	4	0	70	1.06
21038--21114	16	5.1	15	74	13	59	20	5	0	74	1.01
21214--21257	18	2.5	17	82	13	54	15	11	0	72	1.11
21311--21366	25	2.3	25	75	12	62	12	5	7	75	1.18
22969--23058	41	2.2	41	82	7	103	47	6	2	43	1.41
26560--26612	27	2.0	27	88	0	79	35	9	1	52	1.45
26583--26652	27	2.7	27	78	8	74	42	5	0	51	1.25
26662--26965	31	10.0	31	68	14	104	52	0	5	41	1.29
26661--26829	86	2.0	84	82	8	202	52	0	4	43	1.20
26712--26768	26	2.3	26	78	6	64	50	0	3	45	1.18
26739--26865	56	2.2	55	81	12	139	54	0	7	38	1.28
26879--27036	31	5.3	30	68	13	112	48	1	7	43	1.39
26923--27023	28	3.6	27	69	14	69	48	0	4	45	1.30
27584--27644	2	30.5	2	100	0	122	50	0	0	49	1.00
38120--38203	37	2.4	34	78	9	87	32	2	3	61	1.25
38224--38253	5	6.2	5	92	7	53	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38342--38396	22	2.5	21	83	16	76	20	3	1	74	1.06
38311--38401	9	10.8	9	69	9	50	21	5	3	69	1.24

Tables:   1

The End!