Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002949.1 Hibiscus syriacus cultivar Beakdansim tig00006085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96079

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2862--2896
15
2.4
14
86
9
52
77
0
20
2
0.90
4709--4766
23
2.7
21
77
12
64
24
34
12
29
1.91
6684--6726
20
2.2
20
91
0
68
60
4
9
25
1.47
9124--9196
34
2.1
34
92
0
119
38
8
10
42
1.70
13029--13810
67
11.8
67
87
3
1046
30
15
24
29
1.96
13029--13810
267
3.0
266
85
5
1018
30
15
24
29
1.96
13029--13810
334
2.4
327
86
3
1079
30
15
24
29
1.96
13768--13923
81
1.9
80
88
6
235
35
12
25
26
1.92
13761--13940
81
2.2
80
81
10
206
35
12
25
27
1.91
14312--14420
55
2.0
55
98
0
209
35
12
11
39
1.81
26095--26124
11
2.7
11
94
0
51
76
6
0
16
0.99
26616--26664
23
2.1
23
85
7
64
57
12
2
28
1.46
28005--28047
2
21.5
2
95
0
77
53
0
0
46
1.00
28457--28561
37
2.8
37
85
0
147
28
15
15
40
1.87
29234--30703
106
13.9
106
90
1
2180
23
17
24
33
1.96
31249--31301
22
2.4
22
93
0
88
28
7
28
35
1.84
31911--31950
17
2.2
17
86
13
53
2
5
7
85
0.83
36663--36736
37
2.0
36
82
7
87
66
1
9
22
1.29
36693--36730
20
1.9
20
88
0
58
63
2
7
26
1.35
37224--37328
37
2.8
37
88
0
156
30
14
15
40
1.87
39997--40041
20
2.2
20
88
0
63
62
0
22
15
1.33
46830--46878
23
2.1
23
85
7
64
57
12
2
28
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48003--48039
18
2.1
18
100
0
74
43
10
10
35
1.75
52190--52215
11
2.4
11
100
0
52
38
7
15
38
1.76
56232--56265
17
2.0
17
94
0
59
35
29
2
32
1.73
63960--64022
32
2.0
32
87
0
90
33
11
30
25
1.90
78943--79089
48
3.1
48
91
0
231
31
17
25
25
1.97
78996--79310
114
2.8
114
90
1
479
30
18
24
27
1.98
79225--79353
48
2.7
48
95
0
231
31
19
23
25
1.98
80370--80450
1
81.0
1
77
0
81
1
9
0
88
0.56
80370--80450
12
6.7
12
83
13
96
1
9
0
88
0.56
80370--80447
28
2.7
29
86
9
106
1
10
0
88
0.57
80352--80450
28
3.5
27
78
11
101
4
10
1
84
0.79
94710--94745
11
3.3
11
88
0
54
30
2
13
52
1.55
94763--94846
2
44.0
2
72
17
63
46
1
4
47
1.31
94767--94816
13
3.8
13
80
12
57
44
0
6
50
1.26
94710--94814
11
9.7
11
70
17
51
40
1
8
49
1.44

Tables:   1

The End!