Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000295.1 Hibiscus syriacus cultivar Beakdansim tig00000541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2017499
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
File 6 of 9
Found at i:1034201 original size:15 final size:14
Alignment explanation
Indices: 1034148--1034204 Score: 62
Period size: 14 Copynumber: 4.0 Consensus size: 14
1034138 TAACTTACTA
1034148 AAAAAAACTCTAACT
1 AAAAAAAC-CTAACT
*
1034163 -AAAAAACCTAATT
1 AAAAAAACCTAACT
* *
1034176 AGAAAACCCTAACT
1 AAAAAAACCTAACT
1034190 AAAAAAATCCTAACT
1 AAAAAAA-CCTAACT
1034205 TACTAAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 5 0.15
14 22 0.65
15 7 0.21
ACGTcount: A:0.58, C:0.21, G:0.02, T:0.19
Consensus pattern (14 bp):
AAAAAAACCTAACT
Found at i:1034220 original size:33 final size:31
Alignment explanation
Indices: 1034138--1034220 Score: 84
Period size: 33 Copynumber: 2.7 Consensus size: 31
1034128 GTACAAATGT
*
1034138 TAACTTACTAAAAAAAACTCTAACTAAAAAACC
1 TAACTTACT--AAAAAACCCTAACTAAAAAACC
*
1034171 TAA--T--TAGAAAACCCTAACTAAAAAAATCC
1 TAACTTACTAAAAAACCCTAACT-AAAAAA-CC
1034200 TAACTTACTAAAAAACCCTAA
1 TAACTTACTAAAAAACCCTAA
1034221 ATTGAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
27 12 0.29
28 6 0.15
29 6 0.15
31 2 0.05
33 15 0.37
ACGTcount: A:0.55, C:0.22, G:0.01, T:0.22
Consensus pattern (31 bp):
TAACTTACTAAAAAACCCTAACTAAAAAACC
Found at i:1044128 original size:26 final size:26
Alignment explanation
Indices: 1044092--1044146 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
1044082 AATTTCCATA
1044092 AATCCTAAATCTAATAAGAACTTAAC
1 AATCCTAAATCTAATAAGAACTTAAC
1044118 AATCCTAAATCTAATAAGAACTTAAC
1 AATCCTAAATCTAATAAGAACTTAAC
1044144 AAT
1 AAT
1044147 TCCTTTAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.51, C:0.18, G:0.04, T:0.27
Consensus pattern (26 bp):
AATCCTAAATCTAATAAGAACTTAAC
Found at i:1044696 original size:20 final size:21
Alignment explanation
Indices: 1044647--1044704 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
1044637 GAAAATTGTT
1044647 AAAGAAAATGAA-TAAAATAAA
1 AAAGAAAAT-AAGTAAAATAAA
1044668 AAAGTAAAATAAGTAAAATAAA
1 AAAG-AAAATAAGTAAAATAAA
*
1044690 ATA-AAAATAAGTAAA
1 AAAGAAAATAAGTAAA
1044705 TGAACTAATC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
20 12 0.35
21 6 0.18
22 16 0.47
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (21 bp):
AAAGAAAATAAGTAAAATAAA
Found at i:1049991 original size:10 final size:10
Alignment explanation
Indices: 1049976--1050000 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1049966 TGCACATCAT
1049976 TTTAGTTGCA
1 TTTAGTTGCA
1049986 TTTAGTTGCA
1 TTTAGTTGCA
1049996 TTTAG
1 TTTAG
1050001 GTTATATTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.20, T:0.52
Consensus pattern (10 bp):
TTTAGTTGCA
Found at i:1071298 original size:3 final size:3
Alignment explanation
Indices: 1071290--1071317 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1071280 GCGTGATACT
1071290 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA G
1071318 GGATATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:1076749 original size:14 final size:14
Alignment explanation
Indices: 1076730--1076757 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1076720 TCTATTGATA
1076730 GACTAATCCAGATC
1 GACTAATCCAGATC
1076744 GACTAATCCAGATC
1 GACTAATCCAGATC
1076758 AAATACTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.14, T:0.21
Consensus pattern (14 bp):
GACTAATCCAGATC
Found at i:1077078 original size:23 final size:23
Alignment explanation
Indices: 1077035--1077166 Score: 147
Period size: 23 Copynumber: 5.7 Consensus size: 23
1077025 GTTCGTGTTC
* * **
1077035 GTTCATTTATTGTTCATGAATAT
1 GTTCATTTAATGTTCACGAACGT
* * *
1077058 GTTCGTTTAATGTTCGCGAATGT
1 GTTCATTTAATGTTCACGAACGT
*
1077081 GTCCATTTATATGTTCACGAACGT
1 GTTCATTTA-ATGTTCACGAACGT
**
1077105 GTTCATTTAACATTCACGAACGT
1 GTTCATTTAATGTTCACGAACGT
* *
1077128 GTTCATTTAACGTTCACGAACAT
1 GTTCATTTAATGTTCACGAACGT
1077151 GTTCATTTAATGTTCA
1 GTTCATTTAATGTTCA
1077167 TGTATCATTC
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
23 73 0.78
24 20 0.22
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.42
Consensus pattern (23 bp):
GTTCATTTAATGTTCACGAACGT
Found at i:1077108 original size:47 final size:47
Alignment explanation
Indices: 1077038--1077166 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
1077028 CGTGTTCGTT
* * * * *
1077038 CATTTAT-TGTTCATGAATATGTTCGTTTAATGTTCGCGAATGTGTC
1 CATTTATATGTTCACGAACATGTTCATTTAATGTTCACGAACGTGTC
* ** *
1077084 CATTTATATGTTCACGAACGTGTTCATTTAACATTCACGAACGTGTT
1 CATTTATATGTTCACGAACATGTTCATTTAATGTTCACGAACGTGTC
*
1077131 CATTTA-ACGTTCACGAACATGTTCATTTAATGTTCA
1 CATTTATATGTTCACGAACATGTTCATTTAATGTTCA
1077167 TGTATCATTC
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
46 33 0.48
47 36 0.52
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (47 bp):
CATTTATATGTTCACGAACATGTTCATTTAATGTTCACGAACGTGTC
Found at i:1077392 original size:14 final size:15
Alignment explanation
Indices: 1077373--1077401 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1077363 GAACTTGTTT
1077373 ATGAAT-ATAAATGA
1 ATGAATGATAAATGA
1077387 ATGAATGATAAATGA
1 ATGAATGATAAATGA
1077402 GCTCATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (15 bp):
ATGAATGATAAATGA
Found at i:1077422 original size:24 final size:24
Alignment explanation
Indices: 1077394--1077446 Score: 97
Period size: 24 Copynumber: 2.2 Consensus size: 24
1077384 TGAATGAATG
1077394 ATAAATGAGCTCATAAACAAGCTT
1 ATAAATGAGCTCATAAACAAGCTT
*
1077418 ATAAATGAGCTCATAAAGAAGCTT
1 ATAAATGAGCTCATAAACAAGCTT
1077442 ATAAA
1 ATAAA
1077447 CAAGCATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.49, C:0.13, G:0.13, T:0.25
Consensus pattern (24 bp):
ATAAATGAGCTCATAAACAAGCTT
Found at i:1077456 original size:12 final size:12
Alignment explanation
Indices: 1077401--1077459 Score: 64
Period size: 12 Copynumber: 4.9 Consensus size: 12
1077391 ATGATAAATG
*
1077401 AGCTCATAAACA
1 AGCTTATAAACA
**
1077413 AGCTTATAAATG
1 AGCTTATAAACA
* *
1077425 AGCTCATAAAGA
1 AGCTTATAAACA
1077437 AGCTTATAAACA
1 AGCTTATAAACA
*
1077449 AGCATATAAAC
1 AGCTTATAAAC
1077460 GATCTTGTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (12 bp):
AGCTTATAAACA
Found at i:1077457 original size:24 final size:24
Alignment explanation
Indices: 1077401--1077459 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
1077391 ATGATAAATG
**
1077401 AGCTCATAAACAAGCTTATAAATG
1 AGCTCATAAACAAGCTTATAAACA
*
1077425 AGCTCATAAAGAAGCTTATAAACA
1 AGCTCATAAACAAGCTTATAAACA
1077449 AGCAT-ATAAAC
1 AGC-TCATAAAC
1077460 GATCTTGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 29 0.97
25 1 0.03
ACGTcount: A:0.49, C:0.17, G:0.12, T:0.22
Consensus pattern (24 bp):
AGCTCATAAACAAGCTTATAAACA
Found at i:1078475 original size:27 final size:27
Alignment explanation
Indices: 1078442--1078498 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
1078432 TTTCATACCC
1078442 GCATCTAAAGTATGCCCAGCCAAGGAA
1 GCATCTAAAGTATGCCCAGCCAAGGAA
1078469 GCATCTAAAGTATGCCCAGCCAAGGAA
1 GCATCTAAAGTATGCCCAGCCAAGGAA
1078496 GCA
1 GCA
1078499 GCTCGCTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.26, G:0.23, T:0.14
Consensus pattern (27 bp):
GCATCTAAAGTATGCCCAGCCAAGGAA
Found at i:1079711 original size:208 final size:206
Alignment explanation
Indices: 1079358--1079771 Score: 810
Period size: 208 Copynumber: 2.0 Consensus size: 206
1079348 CCGAAAGCGA
1079358 AGGGAGTTGGGAACCCGCCGAAGCCCTATGGCAATTCAAGAACAATATCGAATAATTCTACGCAA
1 AGGGAGTTGGGAACCCGCCGAAGCCCTATGGCAATTCAAGAACAATATCGAATAATTCTACGCAA
1079423 GCCAGCGACGAGGGCGTCGCTAGAACTAGTGGGGAGAATGTCACGGACTGCAACCTTGAAGCCGA
66 GCCAGCGACGAGGGCGTCGCTAGAACTAGTGGGGAGAATGTCACGGACTGCAACCTTGAAGCCGA
1079488 GTCCAACACCATCCAGCCGCATTGGCACGCACCAAGGCACTCCGAAGCCCAAACGCATTAAGCCA
131 GTCCAACACCATCCAGCCGCATTGGCACGCACCAAGGCACTCCGAAGCCCAAACGCATTAAGCCA
1079553 TTTACCAAGAT
196 TTTACCAAGAT
1079564 AGGGAGTTGGGAACCCGCCGAAGCCCTATGGCAATTCAAGAACAATATCGAATAATTCTACGCAA
1 AGGGAGTTGGGAACCCGCCGAAGCCCTATGGCAATTCAAGAACAATATCGAATAATTCTACGCAA
1079629 GCCAAGCGACGAGGGCGTCGCTAGAACTAGTGGGGGAGAATGTCACGGACTGCAACCTTGAAGCC
66 GCC-AGCGACGAGGGCGTCGCTAGAACTAGT-GGGGAGAATGTCACGGACTGCAACCTTGAAGCC
1079694 GAGTCCAACACCATCCAGCCGCATTGGCACGCACCAAGGCACTCCGAAGCCCAAACGCATTAAGC
129 GAGTCCAACACCATCCAGCCGCATTGGCACGCACCAAGGCACTCCGAAGCCCAAACGCATTAAGC
1079759 CATTTACCAAGAT
194 CATTTACCAAGAT
1079772 CGCCACAAAA
Statistics
Matches: 206, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
206 68 0.33
207 27 0.13
208 111 0.54
ACGTcount: A:0.31, C:0.29, G:0.25, T:0.15
Consensus pattern (206 bp):
AGGGAGTTGGGAACCCGCCGAAGCCCTATGGCAATTCAAGAACAATATCGAATAATTCTACGCAA
GCCAGCGACGAGGGCGTCGCTAGAACTAGTGGGGAGAATGTCACGGACTGCAACCTTGAAGCCGA
GTCCAACACCATCCAGCCGCATTGGCACGCACCAAGGCACTCCGAAGCCCAAACGCATTAAGCCA
TTTACCAAGAT
Found at i:1080336 original size:16 final size:16
Alignment explanation
Indices: 1080317--1080357 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
1080307 TTAGGTAAAT
1080317 TAGGTATATATACGTA
1 TAGGTATATATACGTA
1080333 TAGGTATATATACGTA
1 TAGGTATATATACGTA
*
1080349 TTGGTATAT
1 TAGGTATAT
1080358 TAGATATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (16 bp):
TAGGTATATATACGTA
Found at i:1080414 original size:4 final size:4
Alignment explanation
Indices: 1080405--1080592 Score: 60
Period size: 4 Copynumber: 51.8 Consensus size: 4
1080395 TTCGACCCTT
* * * * * * *
1080405 TATA TATA TATA TATT TATA TTTA TTTA TTTA TTTA TTTA TTTA TATA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
1080453 T-TA TATA GTATA TCA-A T-TA TATA -AT- TATA TA-A T-TA TATA T-TA
1 TATA TATA -TATA T-ATA TATA TATA TATA TATA TATA TATA TATA TATA
* * * * *
1080495 TATA GCATA T-TA T-TA TA-A TATA TAT- TATT TAT- TGTT TATT TAT-
1 TATA -TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
* *
1080538 TATA TAT- TAT- TAT- TATA TAT- TAT- TTTA T-TA TACA TATA T-TA
1 TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA TATA
*
1080579 TATA TTTA T-TA TAT
1 TATA TATA TATA TAT
1080593 TATTCTTATA
Statistics
Matches: 151, Mismatches: 12, Indels: 42
0.74 0.06 0.20
Matches are distributed among these distances:
3 56 0.37
4 87 0.58
5 8 0.05
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (4 bp):
TATA
Found at i:1080418 original size:8 final size:8
Alignment explanation
Indices: 1080405--1080592 Score: 60
Period size: 7 Copynumber: 25.9 Consensus size: 8
1080395 TTCGACCCTT
1080405 TATATATA
1 TATATATA
*
1080413 TATATATT
1 TATATATA
*
1080421 TATATTTA
1 TATATATA
* *
1080429 TTTATTTA
1 TATATATA
* *
1080437 TTTATTTA
1 TATATATA
*
1080445 TTTATATA
1 TATATATA
1080453 T-TATATA
1 TATATATA
1080460 GTATATCA-A
1 -TATAT-ATA
1080469 T-TATATA
1 TATATATA
1080476 -AT-TATA
1 TATATATA
1080482 TA-AT-TA
1 TATATATA
1080488 TATAT-TA
1 TATATATA
*
1080495 TATAGCATA
1 TATA-TATA
1080504 T-TAT-TA
1 TATATATA
1080510 TA-ATATA
1 TATATATA
*
1080517 TAT-TATT
1 TATATATA
* *
1080524 TAT-TGTT
1 TATATATA
*
1080531 TATTTAT-
1 TATATATA
1080538 TATATAT-
1 TATATATA
1080545 TAT-TAT-
1 TATATATA
1080551 TATATAT-
1 TATATATA
*
1080558 TAT-TTTA
1 TATATATA
*
1080565 T-TATACA
1 TATATATA
1080572 TATAT-TA
1 TATATATA
*
1080579 TATATTTA
1 TATATATA
1080587 T-TATAT
1 TATATAT
1080593 TATTCTTATA
Statistics
Matches: 145, Mismatches: 16, Indels: 39
0.73 0.08 0.19
Matches are distributed among these distances:
6 23 0.16
7 66 0.46
8 48 0.33
9 7 0.05
10 1 0.01
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (8 bp):
TATATATA
Found at i:1080496 original size:88 final size:87
Alignment explanation
Indices: 1080404--1080620 Score: 225
Period size: 91 Copynumber: 2.5 Consensus size: 87
1080394 GTTCGACCCT
1080404 TTATATATATATATATTTATAT-TTATTTATTTATTTATTTATTTATATATTATATAGTATATCA
1 TTATATATATATATATTTATATATTATTTATTTATTTATTTA-TTATATATTAT-TAGTATAT--
1080468 ATTATATAATTAT-ATA-ATTATATA
62 ATTATATAATTATAATATATTATATA
* * * *
1080492 TTATATAGCATATTATTATAATATATATTATTTA-TTGTTTATTTATTATATATTATTATTATAT
1 TTATATA-TATA-TA-TAT-TTATATATTATTTATTTATTTATTTATTATATATTATTAGTATAT
* *
1080556 ATTATTTTATTATACATATATTATATA
62 ATTATATAATTATA-ATATATTATATA
*
1080583 TT-TAT-TATAT-TATTCT-TATATTATTTATTTATTCATTT
1 TTATATATATATATATT-TATATATTATTTATTTATTTATTT
1080621 TTGGTTTTAT
Statistics
Matches: 109, Mismatches: 10, Indels: 23
0.77 0.07 0.16
Matches are distributed among these distances:
84 11 0.10
85 12 0.11
87 1 0.01
88 21 0.19
89 3 0.03
90 15 0.14
91 24 0.22
92 15 0.14
93 7 0.06
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.60
Consensus pattern (87 bp):
TTATATATATATATATTTATATATTATTTATTTATTTATTTATTATATATTATTAGTATATATTA
TATAATTATAATATATTATATA
Found at i:1080510 original size:3 final size:3
Alignment explanation
Indices: 1080502--1080607 Score: 58
Period size: 3 Copynumber: 33.3 Consensus size: 3
1080492 TTATATAGCA
* *
1080502 TAT TAT TA- TAA TAT ATAT TATT TAT TGTT TATT TAT TAT ATAT TAT
1 TAT TAT TAT TAT TAT -TAT TA-T TAT T-AT TA-T TAT TAT -TAT TAT
*
1080548 TAT TAT ATAT TAT T-T TAT TAT ACAT ATAT TAT ATATT TAT TA- TAT
1 TAT TAT -TAT TAT TAT TAT TAT -TAT -TAT TAT -TA-T TAT TAT TAT
*
1080593 TAT TCT TA- TAT TAT T
1 TAT TAT TAT TAT TAT T
1080608 TATTTATTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 26
0.72 0.06 0.22
Matches are distributed among these distances:
2 8 0.10
3 48 0.58
4 26 0.31
5 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:1080553 original size:27 final size:27
Alignment explanation
Indices: 1080404--1080612 Score: 91
Period size: 27 Copynumber: 7.7 Consensus size: 27
1080394 GTTCGACCCT
*
1080404 TTATATATATA-TA-TATTTATATTTA
1 TTATATATATATTATTATTTTTATTTA
* * *
1080429 TT-TATTTAT-TTATT-TATTTATATA
1 TTATATATATATTATTATTTTTATTTA
* * *
1080453 TTATATAGTATATCAATTA-TATAATTATA
1 TTATATA-TATAT-TATTATTTTTATT-TA
* ***
1080482 TAAT-TATATATTA-TA-TAGCATATTA
1 TTATATATATATTATTATTTTTAT-TTA
1080507 TTATAATATATATTATTTATTGTTTATTTA
1 TTAT-ATATATATTA-TTATT-TTTATTTA
*
1080537 TTATATAT-TATTATTATATATTATTTTA
1 TTATATATATATTATTAT-TTTTA-TTTA
* *
1080565 TTATACATATATTA-TATATTTATTATA
1 TTATATATATATTATTATTTTTATT-TA
*
1080592 TTAT-TCTTATATTATTTATTT
1 TTATAT-ATATATTA-TTATTT
1080613 ATTCATTTTT
Statistics
Matches: 137, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
24 17 0.12
25 17 0.12
26 7 0.05
27 38 0.28
28 28 0.20
29 20 0.15
30 8 0.06
31 2 0.01
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (27 bp):
TTATATATATATTATTATTTTTATTTA
Found at i:1080595 original size:8 final size:8
Alignment explanation
Indices: 1080420--1080611 Score: 92
Period size: 8 Copynumber: 24.9 Consensus size: 8
1080410 ATATATATAT
1080420 TTATATTTA
1 TTATA-TTA
1080429 TT-TATTTA
1 TTATA-TTA
1080437 TT-TATTTA
1 TTATA-TTA
1080445 TT-TATATA
1 TTATAT-TA
1080453 TTATA-TA
1 TTATATTA
* *
1080460 GTATATCAA
1 TTATAT-TA
*
1080469 TTATATAA
1 TTATATTA
*
1080477 TTATATAA
1 TTATATTA
1080485 TTATA-TA
1 TTATATTA
1080492 TTATA-TA
1 TTATATTA
**
1080499 GCATATTA
1 TTATATTA
*
1080507 TTATAATA
1 TTATATTA
1080515 -TATATTA
1 TTATATTA
*
1080522 TT-TATTG
1 TTATATTA
1080529 TT-TATTTA
1 TTATA-TTA
1080537 TTATA-TA
1 TTATATTA
1080544 TTATTATTA
1 TTA-TATTA
1080553 -TATATTA
1 TTATATTA
*
1080560 TTTTATTA
1 TTATATTA
*
1080568 -TACATATA
1 TTATAT-TA
1080576 TTATA-TA
1 TTATATTA
1080583 TT-TATTA
1 TTATATTA
*
1080590 -TATTATTC
1 TTA-TATTA
1080598 TTATATTA
1 TTATATTA
1080606 TT-TATT
1 TTATATT
1080612 TATTCATTTT
Statistics
Matches: 148, Mismatches: 18, Indels: 36
0.73 0.09 0.18
Matches are distributed among these distances:
6 3 0.02
7 55 0.37
8 71 0.48
9 19 0.13
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (8 bp):
TTATATTA
Found at i:1080606 original size:19 final size:19
Alignment explanation
Indices: 1080545--1080616 Score: 53
Period size: 19 Copynumber: 3.8 Consensus size: 19
1080535 TATTATATAT
* *
1080545 TATTATTATA-TATTATTT
1 TATTATTATATTATTCTTA
* *
1080563 TATTA-TACATATATT-ATA
1 TATTATTATAT-TATTCTTA
1080581 TATTTATTATATTATTCTTA
1 TA-TTATTATATTATTCTTA
1080601 TATTATT-TATTTATTC
1 TATTATTATA-TTATTC
1080617 ATTTTTGGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
17 3 0.07
18 10 0.23
19 22 0.51
20 8 0.19
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTATTATATTATTCTTA
Found at i:1080613 original size:27 final size:26
Alignment explanation
Indices: 1080531--1080615 Score: 95
Period size: 27 Copynumber: 3.3 Consensus size: 26
1080521 ATTTATTGTT
1080531 TATTTATTATA-TATT-ATTATTATA
1 TATTTATTATATTATTCATTATTATA
* *
1080555 TA-TTATTTTATTATACATATATTATA
1 TATTTATTATATTATTCAT-TATTATA
* *
1080581 TATTTATTATATTATTCTTATATTATT
1 TATTTATTATATTATTCAT-TATTATA
1080608 TATTTATT
1 TATTTATT
1080616 CATTTTTGGT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
23 7 0.14
24 5 0.10
25 2 0.04
26 9 0.18
27 28 0.55
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTTATTATATTATTCATTATTATA
Found at i:1080615 original size:11 final size:11
Alignment explanation
Indices: 1080519--1080620 Score: 61
Period size: 11 Copynumber: 9.2 Consensus size: 11
1080509 ATAATATATA
*
1080519 TTATTTATTGT
1 TTATTTATTAT
1080530 TTATTTATTAT
1 TTATTTATTAT
*
1080541 ATA-TTATTA-
1 TTATTTATTAT
*
1080550 TTATATATTAT
1 TTATTTATTAT
*
1080561 TT-TATTA-TAC
1 TTAT-TTATTAT
*
1080571 ATATATTATATAT
1 TTAT-TTAT-TAT
1080584 TTATTATATTAT
1 TTATT-TATTAT
*
1080596 TCT-TATATTAT
1 T-TATTTATTAT
1080607 TTATTTATTCAT
1 TTATTTATT-AT
1080619 TT
1 TT
1080621 TTGGTTTTAT
Statistics
Matches: 70, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
9 2 0.03
10 16 0.23
11 33 0.47
12 10 0.14
13 9 0.13
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (11 bp):
TTATTTATTAT
Found at i:1081990 original size:42 final size:44
Alignment explanation
Indices: 1081934--1082016 Score: 107
Period size: 42 Copynumber: 1.9 Consensus size: 44
1081924 TTTATTCTTT
1081934 TTTTATTCCATTTATGCAACAT-TAT-TATATATATATATATTC
1 TTTTATTCCATTTATGCAACATATATATATATATATATATATTC
* * ** *
1081976 TTTTATTTCTTTTATTTAATATATATATATATATATATATA
1 TTTTATTCCATTTATGCAACATATATATATATATATATATA
1082017 CACACACATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 17 0.50
43 3 0.09
44 14 0.41
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.57
Consensus pattern (44 bp):
TTTTATTCCATTTATGCAACATATATATATATATATATATATTC
Found at i:1096658 original size:15 final size:15
Alignment explanation
Indices: 1096640--1096671 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
1096630 ATTATTTAGA
1096640 TAAGTAACACTTGAC
1 TAAGTAACACTTGAC
1096655 TAAGTAACACTTGAC
1 TAAGTAACACTTGAC
1096670 TA
1 TA
1096672 GTTACATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (15 bp):
TAAGTAACACTTGAC
Found at i:1098358 original size:90 final size:89
Alignment explanation
Indices: 1098197--1098370 Score: 312
Period size: 90 Copynumber: 1.9 Consensus size: 89
1098187 GACCTAACAC
*
1098197 ATCCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTA
1 ATCCTCTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTA
1098262 TATTTAATTAATTAAAATTTAATA
66 TATTTAATTAATTAAAATTTAATA
*
1098286 ATCCTCTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCT
1 ATCCTCTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCT
*
1098351 ATATTTAATTAATTGAAATT
65 ATATTTAATTAATTAAAATT
1098371 AAACATTCAG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
89 35 0.43
90 46 0.57
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (89 bp):
ATCCTCTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTA
TATTTAATTAATTAAAATTTAATA
Found at i:1101311 original size:7 final size:7
Alignment explanation
Indices: 1101299--1101341 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
1101289 CCTCGTACTG
1101299 AACCAAA
1 AACCAAA
*
1101306 AACCAACG
1 AACCAA-A
1101314 AACCAAA
1 AACCAAA
*
1101321 AACCAATG
1 AACCAA-A
1101329 AACCAAA
1 AACCAAA
1101336 AACCAA
1 AACCAA
1101342 TGAACATAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
7 18 0.60
8 12 0.40
ACGTcount: A:0.63, C:0.30, G:0.05, T:0.02
Consensus pattern (7 bp):
AACCAAA
Found at i:1101318 original size:15 final size:15
Alignment explanation
Indices: 1101297--1101346 Score: 91
Period size: 15 Copynumber: 3.3 Consensus size: 15
1101287 ATCCTCGTAC
1101297 TGAACCAAAAACCAA
1 TGAACCAAAAACCAA
*
1101312 CGAACCAAAAACCAA
1 TGAACCAAAAACCAA
1101327 TGAACCAAAAACCAA
1 TGAACCAAAAACCAA
1101342 TGAAC
1 TGAAC
1101347 ATAGAACTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.58, C:0.28, G:0.08, T:0.06
Consensus pattern (15 bp):
TGAACCAAAAACCAA
Found at i:1103765 original size:14 final size:15
Alignment explanation
Indices: 1103748--1103782 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
1103738 ATTTTCAAAG
1103748 TTATATT-AATATTT
1 TTATATTAAATATTT
*
1103762 TTATTTTAAATATTT
1 TTATATTAAATATTT
1103777 TTATAT
1 TTATAT
1103783 AAAAAGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATTAAATATTT
Found at i:1113177 original size:9 final size:10
Alignment explanation
Indices: 1113158--1113192 Score: 56
Period size: 9 Copynumber: 3.7 Consensus size: 10
1113148 ATTAATTAAT
1113158 TAATAAATAA
1 TAATAAATAA
1113168 TAAT-AATAA
1 TAATAAATAA
1113177 TAATAAATAA
1 TAATAAATAA
1113187 -AATAAA
1 TAATAAA
1113193 AAAAGACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (10 bp):
TAATAAATAA
Found at i:1113683 original size:130 final size:132
Alignment explanation
Indices: 1113499--1113738 Score: 360
Period size: 131 Copynumber: 1.8 Consensus size: 132
1113489 ATTCATACGC
*
1113499 GATGAGGACAACTGGTTATCTAAGGGTGACATGGCTCCTACGCGATGAGGAGGTCTGGTC-GGGG
1 GATGAGGACAACTGGTTATCTAAGGGTGACATGACTCCTACGCGATGAGGAGGTCTGGTCGGGGG
* * *
1113563 GATGACACGGTTTCTACGTGATGAGGACGACATG-TCATCTTTAGGAATGATAACACGGTTCCTA
66 GATGACACGGTTCCTACGCGATGAGGACGACA-GACCATCTTTAGGAATGATAACACGGTTCCTA
1113627 CAT
130 CAT
* * * * *
1113630 GATGAGGGCGACTGGTTATC-AGGGGTGACATGACTCCTATGTGATGAGGAGGTCTGGTCGGGGG
1 GATGAGGACAACTGGTTATCTAAGGGTGACATGACTCCTACGCGATGAGGAGGTCTGGTCGGGGG
*
1113694 GATGACACGGTTCCTACGCGATGAGGATGACAGACCATCTTTAGG
66 GATGACACGGTTCCTACGCGATGAGGACGACAGACCATCTTTAGG
1113739 GATAATGGTT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
130 36 0.37
131 61 0.63
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.24
Consensus pattern (132 bp):
GATGAGGACAACTGGTTATCTAAGGGTGACATGACTCCTACGCGATGAGGAGGTCTGGTCGGGGG
GATGACACGGTTCCTACGCGATGAGGACGACAGACCATCTTTAGGAATGATAACACGGTTCCTAC
AT
Found at i:1113787 original size:32 final size:32
Alignment explanation
Indices: 1113746--1113822 Score: 97
Period size: 32 Copynumber: 2.4 Consensus size: 32
1113736 AGGGATAATG
1113746 GTTTCAAGAGAAACCA-ACTCAAAGATGATTT-T
1 GTTTCAAGAGAAACCAGACTCAAAGAT--TTTGT
*
1113778 GTTTCAAGAGAAA-CAGACTCAAATATTTTGT
1 GTTTCAAGAGAAACCAGACTCAAAGATTTTGT
*
1113809 GTTTCCAGAGAAAC
1 GTTTCAAGAGAAAC
1113823 TGCCTCAAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
30 3 0.08
31 15 0.38
32 22 0.55
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.29
Consensus pattern (32 bp):
GTTTCAAGAGAAACCAGACTCAAAGATTTTGT
Found at i:1113959 original size:66 final size:64
Alignment explanation
Indices: 1113775--1114087 Score: 245
Period size: 64 Copynumber: 4.9 Consensus size: 64
1113765 CAAAGATGAT
* * * * * *
1113775 TTTGTTTCAAGAGAAACAGACTCAAATATTTTGTGTTTCCAGAGAAACTGCCTCAAGGGAGACAA
1 TTTGTTTCAATAGAAACAGACTCAAAGA-TTT-T-TTTCAAAAGAAACTGTCTCAAGAGAGACAA
1113840 AA
63 AA
* * * * * *
1113842 TTTGTTTCAATGGAAA-TGATCTCAAAGGTTGGTTTT-AAGAGAAATTGTCTCAAGAGAGACAAA
1 TTTGTTTCAATAGAAACAGA-CTCAAAGATT-TTTTTCAAAAGAAACTGTCTCAAGAGAGACAAA
1113905 A
64 A
*
1113906 CTTTGTTTTC-ATAGAAACAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTC-A-AGAGACAA
1 -TTTG-TTTCAATAGAAACAGACTCAAAGATTTTT-TTCAAAAGAAACTGTCTCAAGAGAGACAA
1113968 AA
63 AA
* * * * *
1113970 ----TTTCAATGGAAACA-ATATCAAAGGTTTTTTCTCAAAGGAAATTGTCTCAAGAGAGACAAA
1 TTTGTTTCAATAGAAACAGA-CTCAAAGATTTTTT-TCAAAAGAAACTGTCTCAAGAGAGACAAA
1114030 A
64 A
* * *
1114031 CTTTGTTTCCAA-AGAAATAGACTCAAAGA-TTTTTTAAAAAGAAACTATCTCAAGAGA
1 -TTTGTTT-CAATAGAAACAGACTCAAAGATTTTTTTCAAAAGAAACTGTCTCAAGAGA
1114088 AATTTTTTTT
Statistics
Matches: 196, Mismatches: 31, Indels: 41
0.73 0.12 0.15
Matches are distributed among these distances:
58 6 0.03
59 33 0.17
60 1 0.01
61 10 0.05
64 55 0.28
65 30 0.15
66 37 0.19
67 24 0.12
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (64 bp):
TTTGTTTCAATAGAAACAGACTCAAAGATTTTTTTCAAAAGAAACTGTCTCAAGAGAGACAAAA
Found at i:1114884 original size:532 final size:530
Alignment explanation
Indices: 1113854--1114919 Score: 1830
Period size: 532 Copynumber: 2.0 Consensus size: 530
1113844 TGTTTCAATG
*
1113854 GAAATGATCTCAAAGGTTGGTTTTAAGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTTCATA
1 GAAACGATCTCAAAGGTTGGTTTTAAGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTTCATA
1113919 GAAACAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTCAAGAGACAAAATTTCAATGGAAACA
66 GAAACAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTCAAGAGACAAAATTTCAATGGAAACA
* *
1113984 ATATCAAAGGTTTTTTCTCAAAGGAAATTGTCTCAAGAGAGACAAAACTTTGTTTCCAAAGAAAT
131 ATATCAAAGGTGTTTTCTCAAAGGAAATTGTCTCAAGAGAGACAAAACTATGTTTCCAAAGAAAT
** *
1114049 AGACTCAAAGATTTTTTAAAAAGAAACTATCTCAAGAGAAATTTTTTTTTTCAAGAGAAACAACC
196 AGACTCAAAGATTTTTTAAAAAGAAACTATCTCAAGAGAAATAATTTGTTTCAAGAGAAACAACC
*
1114114 CAAAGGATACTGATAGTCGGCTTGTTCCTGCTGGTGGAGGAAACCTTCAGAAGATCTGATTATTC
261 CAAAGGATACTGATAGTCGGCTTGTTCCTGCTGGTGGAGGAAACCTTCAGAAGATCTGATCATTC
* * *
1114179 AAATCAGGATGTTTAATCCCCAAAGATACCCCAATATTCAATATTGAATCTCCAAAGATGCCCCA
326 AAATCAGGATGTTGAATCCCCAAAGATACCCCAACATTCAATATTAAATCTCCAAAGATGCCCCA
* *
1114244 TCATTCATCGTTTCTTGCTTCAGCACTGATTCTAAGCATGAGCTTGGTGTCTGAGACCCACATGT
391 TCATTCATCGTTTCTTGCTTCAACACTGATTCTAAGCATGAGCTTGGTGTCCGAGACCCACATGT
1114309 CCACTACCAAGATCCACTCCAGAGAGATTGTCTTGTTTGAAAAATGTTTTTCTTCTTCTTGTATT
456 CCACTACCAAGATCCACTCCAGAGAGATTGTCTTGTTTGAAAAATGTTTTTCTTCTTCTT-TATT
*
1114374 TTCAAAAATAT
520 TTCAAAAAAAT
*
1114385 GAAACGATCTCAAAGGTTGGTTTTAAGAGAAATTGTCTTAAGAGAGACAAAACTTTGTTTTCATA
1 GAAACGATCTCAAAGGTTGGTTTTAAGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTTCATA
* *
1114450 GAAATAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTCAAGAGACAAAATTTCAATGGAAACG
66 GAAACAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTCAAGAGACAAAATTTCAATGGAAACA
*
1114515 ATATCAAAGGTGTTTTCTCAAAGGAAATTTTCTCAAGAGAGACAAAACTATG-TTCCAAAGAAAT
131 ATATCAAAGGTGTTTTCTCAAAGGAAATTGTCTCAAGAGAGACAAAACTATGTTTCCAAAGAAAT
* *
1114579 AGACTCAAAGATTTTTTCAAAAGAAACTGTCTCAAGAGACAA-AATTTGTTTCAAGAGAAACAAC
196 AGACTCAAAGATTTTTTAAAAAGAAACTATCTCAAGAGA-AATAATTTGTTTCAAGAGAAACAAC
* *
1114643 TCAAAGGATACTGATAGTCGGCTTGTTCCTGCTGGTGGAGGAAATGCCTTCAGAGGATCTGATCA
260 CCAAAGGATACTGATAGTCGGCTTGTTCCTGCTGGTGGAGGAAA--CCTTCAGAAGATCTGATCA
** *
1114708 TTCAAATCAGGATGTTGAATCCCCAAAGATGTCCCAACATTCGATATTAAATCTCCAAAGATGCC
323 TTCAAATCAGGATGTTGAATCCCCAAAGATACCCCAACATTCAATATTAAATCTCCAAAGATGCC
** *
1114773 CCATCATTCATCGTTTCTTGCTTCAACACTGATTCTAAGTGTGAGCTTGGTGTCCGAGACCCATA
388 CCATCATTCATCGTTTCTTGCTTCAACACTGATTCTAAGCATGAGCTTGGTGTCCGAGACCCACA
*
1114838 TGTCCACTACCAAGATCCACTCCAGAGAGATTGTCTTGTTTGAAAAATGTTTTTCTTCTTCTTTT
453 TGTCCACTACCAAGATCCACTCCAGAGAGATTGTCTTGTTTGAAAAATGTTTTTCTTCTTCTTTA
1114903 TTTTCAAAAAAAT
518 TTTTCAAAAAAAT
1114916 GAAA
1 GAAA
1114920 ATATAAATTA
Statistics
Matches: 504, Mismatches: 28, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
530 111 0.22
531 194 0.38
532 199 0.39
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.30
Consensus pattern (530 bp):
GAAACGATCTCAAAGGTTGGTTTTAAGAGAAATTGTCTCAAGAGAGACAAAACTTTGTTTTCATA
GAAACAGACTCAAAGATTTTTCTTCAAAAGAAACTATCTCAAGAGACAAAATTTCAATGGAAACA
ATATCAAAGGTGTTTTCTCAAAGGAAATTGTCTCAAGAGAGACAAAACTATGTTTCCAAAGAAAT
AGACTCAAAGATTTTTTAAAAAGAAACTATCTCAAGAGAAATAATTTGTTTCAAGAGAAACAACC
CAAAGGATACTGATAGTCGGCTTGTTCCTGCTGGTGGAGGAAACCTTCAGAAGATCTGATCATTC
AAATCAGGATGTTGAATCCCCAAAGATACCCCAACATTCAATATTAAATCTCCAAAGATGCCCCA
TCATTCATCGTTTCTTGCTTCAACACTGATTCTAAGCATGAGCTTGGTGTCCGAGACCCACATGT
CCACTACCAAGATCCACTCCAGAGAGATTGTCTTGTTTGAAAAATGTTTTTCTTCTTCTTTATTT
TCAAAAAAAT
Found at i:1115181 original size:23 final size:21
Alignment explanation
Indices: 1115163--1115206 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
1115153 AATTTTTTCC
*
1115163 CTTCTTTTTTTTCCTTTTTCATT
1 CTTCGTTTTTTTCCTTTTT--TT
*
1115186 TTTCGTTTTTTTCCTTTTTTT
1 CTTCGTTTTTTTCCTTTTTTT
1115207 TGTTTTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
23 17 0.89
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.77
Consensus pattern (21 bp):
CTTCGTTTTTTTCCTTTTTTT
Found at i:1120111 original size:22 final size:24
Alignment explanation
Indices: 1120086--1120132 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
1120076 AAAATAAAAA
*
1120086 ATTAATAAAATAAT-A-TATATAT
1 ATTAAGAAAATAATAAGTATATAT
*
1120108 ATTAGGAAAATAATAAGTATATAT
1 ATTAAGAAAATAATAAGTATATAT
1120132 A
1 A
1120133 AAATTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 12 0.57
23 1 0.05
24 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.36
Consensus pattern (24 bp):
ATTAAGAAAATAATAAGTATATAT
Found at i:1120703 original size:20 final size:19
Alignment explanation
Indices: 1120678--1120731 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
1120668 GAGCAACAAA
1120678 TTCGCAACACGAATTCCAAT
1 TTCGCAAC-CGAATTCCAAT
* *
1120698 TTCGCAACCCAGTTTCCAAT
1 TTCGCAACCGA-ATTCCAAT
1120718 TTCGCAACGCGAAT
1 TTCGCAAC-CGAAT
1120732 ATGTAAATCG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (19 bp):
TTCGCAACCGAATTCCAAT
Found at i:1120742 original size:20 final size:21
Alignment explanation
Indices: 1120718--1120867 Score: 97
Period size: 20 Copynumber: 7.4 Consensus size: 21
1120708 AGTTTCCAAT
1120718 TTCGCAACGCGAATATGTAAA
1 TTCGCAACGCGAATATGTAAA
** * * **
1120739 -TCGCATTGCGATTTTCCAAA
1 TTCGCAACGCGAATATGTAAA
*
1120759 TTTGCAACGCGAA-A-GTCAAA
1 TTCGCAACGCGAATATGT-AAA
1120779 TTCGCAACGCG-ATA-GTCAAA
1 TTCGCAACGCGAATATGT-AAA
*
1120799 TTCGCAACGCGAATTTGTAAA
1 TTCGCAACGCGAATATGTAAA
*
1120820 -TCGCAACAC-AGA-A-GTCAAA
1 TTCGCAACGCGA-ATATGT-AAA
1120839 TTCGCAACGCG-ATA-GTCAAA
1 TTCGCAACGCGAATATGT-AAA
1120859 TTCGCAACG
1 TTCGCAACG
1120868 TGAAAGTCAA
Statistics
Matches: 101, Mismatches: 18, Indels: 21
0.72 0.13 0.15
Matches are distributed among these distances:
18 2 0.02
19 6 0.06
20 78 0.77
21 13 0.13
22 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (21 bp):
TTCGCAACGCGAATATGTAAA
Found at i:1120766 original size:41 final size:41
Alignment explanation
Indices: 1120710--1120826 Score: 125
Period size: 41 Copynumber: 2.9 Consensus size: 41
1120700 CGCAACCCAG
**
1120710 TTTCC-AATTTCGCAACGCGAATATGTAAATCGCATTGCGAT
1 TTTCCAAATTT-GCAACGCGAATATGTAAATCGCAACGCGAT
1120751 TTTCCAAATTTGCAACGCGAA-A-GTCAAATTCGCAACGCGAT
1 TTTCCAAATTTGCAACGCGAATATGT-AAA-TCGCAACGCGAT
** * *
1120792 AGT-CAAATTCGCAACGCGAATTTGTAAATCGCAAC
1 TTTCCAAATTTGCAACGCGAATATGTAAATCGCAAC
1120827 ACAGAAGTCA
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
39 2 0.03
40 27 0.42
41 29 0.45
42 7 0.11
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (41 bp):
TTTCCAAATTTGCAACGCGAATATGTAAATCGCAACGCGAT
Found at i:1120875 original size:20 final size:20
Alignment explanation
Indices: 1120755--1120879 Score: 148
Period size: 20 Copynumber: 6.2 Consensus size: 20
1120745 TGCGATTTTC
*
1120755 CAAATTTGCAACGCGAAAGT
1 CAAATTCGCAACGCGAAAGT
*
1120775 CAAATTCGCAACGCGATAGT
1 CAAATTCGCAACGCGAAAGT
*
1120795 CAAATTCGCAACGCGAATTTGT
1 CAAATTCGCAACGCGAA--AGT
*
1120817 -AAA-TCGCAACAC-AGAAGT
1 CAAATTCGCAACGCGA-AAGT
*
1120835 CAAATTCGCAACGCGATAGT
1 CAAATTCGCAACGCGAAAGT
*
1120855 CAAATTCGCAACGTGAAAGT
1 CAAATTCGCAACGCGAAAGT
1120875 CAAAT
1 CAAAT
1120880 GTTTCTACAC
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
18 2 0.02
19 4 0.04
20 77 0.87
21 4 0.04
22 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAATTCGCAACGCGAAAGT
Found at i:1121032 original size:22 final size:22
Alignment explanation
Indices: 1121007--1121054 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
1120997 CTACAGCGAC
1121007 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
*
1121029 ATCCGTCCCCATTTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
1121051 ATCC
1 ATCC
1121055 ATCTATCTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.23, C:0.44, G:0.12, T:0.21
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:1121380 original size:20 final size:20
Alignment explanation
Indices: 1121355--1121402 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
1121345 ACTAAAATCA
1121355 CGTTGCGATTTTCATTTTCG
1 CGTTGCGATTTTCATTTTCG
* * *
1121375 CGTTGCAATTTTTATTTTTG
1 CGTTGCGATTTTCATTTTCG
*
1121395 CGTCGCGA
1 CGTTGCGA
1121403 ATTTAAGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.48
Consensus pattern (20 bp):
CGTTGCGATTTTCATTTTCG
Found at i:1125001 original size:27 final size:29
Alignment explanation
Indices: 1124971--1125026 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
1124961 TGATGTACCA
1124971 AAATG-AATCA-A-TAAACTAAGGAAATAT
1 AAATGAAATCAGATTAAAC-AAGGAAATAT
*
1124998 AAATGAAATGAGATTAAACAAGGAAATAT
1 AAATGAAATCAGATTAAACAAGGAAATAT
1125027 GCATATTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 5 0.20
28 4 0.16
29 11 0.44
30 5 0.20
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.21
Consensus pattern (29 bp):
AAATGAAATCAGATTAAACAAGGAAATAT
Found at i:1127411 original size:36 final size:36
Alignment explanation
Indices: 1127370--1127451 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
1127360 AATGTACCTC
*
1127370 TTTTTTATATTTTCATTTTGA-ACTTATTTTTTATTTG
1 TTTTTTATATTTTCATTCT-ACACTTATTTTTTA-TTG
* * *
1127407 TTTTTTA-CTTTTGATTCTACACTTCTTTTTTATTG
1 TTTTTTATATTTTCATTCTACACTTATTTTTTATTG
1127442 TTTTTTATAT
1 TTTTTTATAT
1127452 AGTGCTTCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
35 11 0.29
36 20 0.53
37 7 0.18
ACGTcount: A:0.17, C:0.09, G:0.05, T:0.70
Consensus pattern (36 bp):
TTTTTTATATTTTCATTCTACACTTATTTTTTATTG
Found at i:1128525 original size:12 final size:12
Alignment explanation
Indices: 1128508--1128548 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
1128498 GAAATGTACC
1128508 TCTTTTGTATTT
1 TCTTTTGTATTT
*
1128520 TCTTTTG-ATCT
1 TCTTTTGTATTT
*
1128531 TCTTTTTTA-TT
1 TCTTTTGTATTT
1128542 TCTTTTG
1 TCTTTTG
1128549 ACTTTTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 16 0.67
12 8 0.33
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.73
Consensus pattern (12 bp):
TCTTTTGTATTT
Found at i:1132683 original size:43 final size:43
Alignment explanation
Indices: 1132634--1132720 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
1132624 CATGACTATA
1132634 AGTCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGAT
1 AGTCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGAT
* *
1132677 AGTCATAAAGTATTCAAGGTATCATGAGAATAAAAGTGTAGAT
1 AGTCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGAT
1132720 A
1 A
1132721 CTATTAAAGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.47, C:0.07, G:0.18, T:0.28
Consensus pattern (43 bp):
AGTCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGAT
Found at i:1132729 original size:43 final size:43
Alignment explanation
Indices: 1132636--1132730 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
1132626 TGACTATAAG
*
1132636 TCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGATAG
1 TCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGATAC
* *
1132679 TCATAAAGTATTCAAGGTATCATGAGAATAAAAGTGTAGATAC
1 TCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGATAC
1132722 T-ATTAAAGT
1 TCA-TAAAGT
1132731 TGTATTTATA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
42 1 0.02
43 47 0.98
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.29
Consensus pattern (43 bp):
TCATAAAGTATTCAAAGTATCATGAAAATAAAAGTGTAGATAC
Found at i:1144676 original size:22 final size:22
Alignment explanation
Indices: 1144651--1144701 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
1144641 TGCAAAATAA
1144651 AGAAAAAGTTCTTCTTTTGTTT
1 AGAAAAAGTTCTTCTTTTGTTT
1144673 AGAAAAAGTTCTTCTTTTGTTT
1 AGAAAAAGTTCTTCTTTTGTTT
*
1144695 CGAAAAA
1 AGAAAAA
1144702 ACAACAGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
AGAAAAAGTTCTTCTTTTGTTT
Found at i:1144738 original size:30 final size:33
Alignment explanation
Indices: 1144696--1144756 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 33
1144686 CTTTTGTTTC
*
1144696 GAAAAAACAACAG-TTCAAA-AT-AGAAAAAAG
1 GAAAAAACAACAGATACAAACATGAGAAAAAAG
1144726 GAAAAGAA-AACAGATACAAACATGAGAAAAA
1 GAAAA-AACAACAGATACAAACATGAGAAAAA
1144757 GTGGGAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
30 10 0.38
31 7 0.27
32 2 0.08
33 7 0.27
ACGTcount: A:0.67, C:0.10, G:0.15, T:0.08
Consensus pattern (33 bp):
GAAAAAACAACAGATACAAACATGAGAAAAAAG
Found at i:1145958 original size:24 final size:28
Alignment explanation
Indices: 1145912--1145961 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 28
1145902 TTCATTCTTC
1145912 TTCTTTGCTTTTAGTTTTATAAAGTTCT
1 TTCTTTGCTTTTAGTTTTATAAAGTTCT
1145940 TTCTTT-C-TTTA-TTTT-TAAAGTT
1 TTCTTTGCTTTTAGTTTTATAAAGTT
1145962 TTCATTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 7 0.32
25 4 0.18
26 4 0.18
27 1 0.05
28 6 0.27
ACGTcount: A:0.18, C:0.10, G:0.08, T:0.64
Consensus pattern (28 bp):
TTCTTTGCTTTTAGTTTTATAAAGTTCT
Found at i:1156031 original size:23 final size:23
Alignment explanation
Indices: 1156005--1156049 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
1155995 ACCAAAACCC
1156005 ACCATAGCTTCTGCCAAAAATCA
1 ACCATAGCTTCTGCCAAAAATCA
*
1156028 ACCATAGCTTCTGCCCAAAATC
1 ACCATAGCTTCTGCCAAAAATC
1156050 TTTGCTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.33, G:0.09, T:0.22
Consensus pattern (23 bp):
ACCATAGCTTCTGCCAAAAATCA
Found at i:1158429 original size:13 final size:13
Alignment explanation
Indices: 1158410--1158444 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
1158400 TTCATAACTC
*
1158410 GACCCGACCCGTT
1 GACCCGACCCATT
*
1158423 TACCCGACCCATT
1 GACCCGACCCATT
1158436 GACCCGACC
1 GACCCGACC
1158445 TGAACCGTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.20, C:0.49, G:0.17, T:0.14
Consensus pattern (13 bp):
GACCCGACCCATT
Found at i:1158468 original size:15 final size:16
Alignment explanation
Indices: 1158448--1158482 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
1158438 CCCGACCTGA
1158448 ACCGTTGACC-CGTTG
1 ACCGTTGACCGCGTTG
1158463 ACCGTTGACCGGCGTTG
1 ACCGTTGACC-GCGTTG
1158480 ACC
1 ACC
1158483 ACTATTGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
17 8 0.44
ACGTcount: A:0.14, C:0.34, G:0.29, T:0.23
Consensus pattern (16 bp):
ACCGTTGACCGCGTTG
Found at i:1161336 original size:43 final size:43
Alignment explanation
Indices: 1161274--1161585 Score: 475
Period size: 43 Copynumber: 7.3 Consensus size: 43
1161264 TTAATTACCG
*
1161274 TTACAGTTCCCCTAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
* * *
1161317 TTACAGTTTCCCCAAGTCCCTTTGTTGTGTACAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
* *
1161360 TTACAG-TCCCCCAGGTCCCTTTGATGTGTGCAAGGGTAATCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1161402 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
* *
1161445 TTACAGTTCCCCCAGGTCCCTTTGCTATGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
* * *
1161488 TTACAATTCCCCCAGGTTCCTTTTTCTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGT-TGTGTGCAAGGGTAAGCC
* * *
1161532 TTACAGTT-TCCCAGGTTCTTTTGTTGTGTGCAAGGGTAAGCC
1 TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
1161574 TTACAGTTCCCC
1 TTACAGTTCCCC
1161586 AGGCTCTTTT
Statistics
Matches: 243, Mismatches: 23, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
42 63 0.26
43 156 0.64
44 24 0.10
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACAGTTCCCCCAGGTCCCTTTGTTGTGTGCAAGGGTAAGCC
Found at i:1163044 original size:34 final size:34
Alignment explanation
Indices: 1163001--1163065 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
1162991 GCGTGGAGTA
1163001 GTTTTGTTATTACGTAGATAAGATAGAATATGGT
1 GTTTTGTTATTACGTAGATAAGATAGAATATGGT
1163035 GTTTTGTTATTACGTAGATAAGATAGAATAT
1 GTTTTGTTATTACGTAGATAAGATAGAATAT
1163066 AGTGAACAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.03, G:0.22, T:0.42
Consensus pattern (34 bp):
GTTTTGTTATTACGTAGATAAGATAGAATATGGT
Found at i:1164669 original size:21 final size:21
Alignment explanation
Indices: 1164645--1164687 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1164635 ATTTGGTCCC
*
1164645 TAATTTACTTAAATTAATTTA
1 TAATTGACTTAAATTAATTTA
* *
1164666 TAATTGATTTTAATTAATTTA
1 TAATTGACTTAAATTAATTTA
1164687 T
1 T
1164688 TTATTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TAATTGACTTAAATTAATTTA
Found at i:1165510 original size:15 final size:16
Alignment explanation
Indices: 1165490--1165594 Score: 112
Period size: 15 Copynumber: 6.6 Consensus size: 16
1165480 AATTTTTCGT
1165490 TTATTATTATTA-AAA
1 TTATTATTATTATAAA
1165505 TTATTATTA-TA-AATA
1 TTATTATTATTATAA-A
1165520 TTATTATTATTATTAAAA
1 TTATTATTATTA-T-AAA
1165538 TTATTATTATTATTAAA
1 TTATTATTATTA-TAAA
*
1165555 -TATTATTATTATATA
1 TTATTATTATTATAAA
1165570 TTA-TATTATTATTAAA
1 TTATTATTATTA-TAAA
*
1165586 TAATTATTA
1 TTATTATTA
1165595 CAAGCCCAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
14 4 0.05
15 30 0.38
16 20 0.25
17 8 0.10
18 15 0.19
19 2 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTATTATTATAAA
Found at i:1165513 original size:18 final size:18
Alignment explanation
Indices: 1165490--1165583 Score: 124
Period size: 18 Copynumber: 5.3 Consensus size: 18
1165480 AATTTTTCGT
1165490 TTATTATTATTAAAATTA
1 TTATTATTATTAAAATTA
*
1165508 TTATTA-TA--AATATTA
1 TTATTATTATTAAAATTA
1165523 TTATTATTATTAAAATTA
1 TTATTATTATTAAAATTA
1165541 TTATTATTATTAAATATTA
1 TTATTATTATTAAA-ATTA
*
1165560 TTATTATATATT-ATATTA
1 TTATTAT-TATTAAAATTA
1165578 TTATTA
1 TTATTA
1165584 AATAATTATT
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
15 12 0.18
16 2 0.03
17 2 0.03
18 36 0.53
19 12 0.18
20 4 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATTATTATTAAAATTA
Found at i:1165594 original size:3 final size:3
Alignment explanation
Indices: 1165490--1165583 Score: 100
Period size: 3 Copynumber: 31.0 Consensus size: 3
1165480 AATTTTTCGT
** * * **
1165490 TTA TTA TTA TTA AAA TTA TTA TTA TAA ATA TTA TTA TTA TTA TTA AAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1165538 TTA TTA TTA TTA TTAA ATA TTA TTA TTA TATA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
1165584 AATAATTATT
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
2 2 0.03
3 67 0.91
4 5 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:1166916 original size:16 final size:17
Alignment explanation
Indices: 1166895--1166937 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
1166885 ATGCTTTTAA
1166895 ATTTATTTTA-AATATT
1 ATTTATTTTATAATATT
1166911 ATTTA-TTTATAATATT
1 ATTTATTTTATAATATT
*
1166927 ATTTTTTTTAT
1 ATTTATTTTAT
1166938 TACTTTTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 4 0.17
16 15 0.62
17 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
ATTTATTTTATAATATT
Found at i:1166953 original size:14 final size:13
Alignment explanation
Indices: 1166906--1166964 Score: 59
Period size: 13 Copynumber: 4.5 Consensus size: 13
1166896 TTTATTTTAA
1166906 ATATTATT-TATTT
1 ATATTATTAT-TTT
*
1166919 ATAATATTATTTT
1 ATATTATTATTTT
*
1166932 -TTTTATTACTTTT
1 ATATTATTA-TTTT
1166945 ATATTATTATTTT
1 ATATTATTATTTT
1166958 CATATTA
1 -ATATTA
1166965 GTCACATAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 6 0.16
13 18 0.47
14 14 0.37
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (13 bp):
ATATTATTATTTT
Found at i:1166981 original size:2 final size:2
Alignment explanation
Indices: 1166974--1166999 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1166964 AGTCACATAA
1166974 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1167000 TTTAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1172624 original size:26 final size:27
Alignment explanation
Indices: 1172594--1172647 Score: 85
Period size: 26 Copynumber: 2.0 Consensus size: 27
1172584 TATTATACTC
1172594 ATCCAGCAAAGAAA-GAAGAAA-GAAAA
1 ATCCAGCAAAGAAAGGAA-AAAGGAAAA
1172620 ATCCAGCAAAGAAAGGAAAAAGGAAAA
1 ATCCAGCAAAGAAAGGAAAAAGGAAAA
1172647 A
1 A
1172648 GCAAAAATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.65, C:0.11, G:0.20, T:0.04
Consensus pattern (27 bp):
ATCCAGCAAAGAAAGGAAAAAGGAAAA
Found at i:1172662 original size:22 final size:21
Alignment explanation
Indices: 1172598--1172688 Score: 76
Period size: 23 Copynumber: 4.0 Consensus size: 21
1172588 ATACTCATCC
1172598 AGCAAAGAAAGAAGAAAGAAAAA
1 AGCAAA-AAAGAA-AAAGAAAAA
*
1172621 TCCAGCAAAGAAAGGAAAAAGGAAAA
1 ---AGCAAA-AAA-GAAAAAGAAAAA
1172647 AGCAAAAATAGAAAAAAGAAAAA
1 AGCAAAAA-AG-AAAAAGAAAAA
*
1172670 AGGAAAAAAGAAAAA-AAAA
1 AGCAAAAAAGAAAAAGAAAA
1172689 GGAAAATTGA
Statistics
Matches: 59, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
20 4 0.07
21 5 0.08
22 5 0.08
23 24 0.41
26 18 0.31
27 3 0.05
ACGTcount: A:0.74, C:0.05, G:0.19, T:0.02
Consensus pattern (21 bp):
AGCAAAAAAGAAAAAGAAAAA
Found at i:1172668 original size:15 final size:14
Alignment explanation
Indices: 1172631--1172685 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 14
1172621 TCCAGCAAAG
* *
1172631 AAAGGAAAAAGGAA
1 AAAGAAAAAAGAAA
1172645 AAAGCAAAAATAGAAA
1 AAAG-AAAAA-AGAAA
1172661 AAAGAAAAAAGGAAA
1 AAAGAAAAAA-GAAA
1172676 AAAGAAAAAA
1 AAAGAAAAAA
1172686 AAAGGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
14 5 0.14
15 23 0.64
16 8 0.22
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAAGAAA
Found at i:1172686 original size:8 final size:7
Alignment explanation
Indices: 1172631--1172685 Score: 65
Period size: 7 Copynumber: 7.4 Consensus size: 7
1172621 TCCAGCAAAG
*
1172631 AAAGGAA
1 AAAGAAA
*
1172638 AAAGGAA
1 AAAGAAA
1172645 AAAGCAAA
1 AAAG-AAA
1172653 AATAGAAA
1 AA-AGAAA
1172661 AAAGAAA
1 AAAGAAA
1172668 AAAGGAAA
1 AAA-GAAA
1172676 AAAGAAA
1 AAAGAAA
1172683 AAA
1 AAA
1172686 AAAGGAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
7 26 0.59
8 16 0.36
9 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.18, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:1175139 original size:115 final size:114
Alignment explanation
Indices: 1174884--1175218 Score: 544
Period size: 115 Copynumber: 2.9 Consensus size: 114
1174874 CACGTTCTCG
* *
1174884 TAGTAGAAATAAGGAGCCCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATTTGATCTGGTTT
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
*
1174949 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGACGAATTTGCTCA
66 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTGCTCA
*
1174998 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTATTCTTTGAGTTATCTGATCTGGTTT
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
*
1175063 GGTATGAACCCCAAAAACCAATCATTAGATTTGAAAGATGAATTTGCTCA
66 GGTATGAACCCC-AAAACCAATCATTGGATTTGAAAGATGAATTTGCTCA
* * * *
1175113 TAGTAGAAATAAGGAGACCCAATAGCATCTTTTGAAAGTGTTCTTTGAATTATCTGATCTGGTTC
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
* * * *
1175178 AGTAGGAACCCCAGAACCAATCATTGGATTTAAAAGATGAA
66 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAA
1175219 CATGATCATA
Statistics
Matches: 205, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
114 100 0.49
115 105 0.51
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (114 bp):
TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTT
GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTGCTCA
Found at i:1176994 original size:40 final size:40
Alignment explanation
Indices: 1176939--1177018 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
1176929 TGAGCAGAAG
1176939 CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
1 CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
1176979 CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
1 CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
1177019 TGAGCTGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.30
Consensus pattern (40 bp):
CCACAGAAAAGGATGAATGTGTTGTCAAGTGTTTTACATC
Found at i:1177452 original size:22 final size:22
Alignment explanation
Indices: 1177421--1177475 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1177411 ATCTACACTC
1177421 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGATAGATTCCCTT
* *
1177443 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCCCTT
1177465 TTCAAAGATGA
1 TTCAAAGATGA
1177476 AAGCTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCCCTT
Found at i:1178342 original size:185 final size:186
Alignment explanation
Indices: 1178019--1178390 Score: 658
Period size: 185 Copynumber: 2.0 Consensus size: 186
1178009 CCAATCAACA
*
1178019 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCCTAGTTTCTCATTCAACCTTTTCTAAAAAT
1 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAACCTTTTCTAAAAAT
* * *
1178084 GAAATTGTTGAAAAGTAAGAAAACGATTTTCTTAGTTTTTTTACTTAGTAAACTATTTCCCACAT
66 GAAATTGTTGAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTACTTAATAAACTATTTCCCACAT
1178149 CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
131 CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
** *
1178205 TGTTATTTTG-AAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTTTATCTTTTCT-AAAAT
1 TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAACCTTTTCTAAAAAT
1178268 GAAATTGTTGAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTTACTTAATAAACTATTTCCCACA
66 GAAATTGTTGAAAAGTAAGAAAACAATTTCCTTAG-TTTTTTTACTTAATAAACTATTTCCCACA
1178333 TCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
130 TCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
1178390 T
1 T
1178391 TTTAAAGCCT
Statistics
Matches: 178, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
184 38 0.21
185 130 0.73
186 10 0.06
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (186 bp):
TGTTATTTTGAAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAACCTTTTCTAAAAAT
GAAATTGTTGAAAAGTAAGAAAACAATTTCCTTAGTTTTTTTACTTAATAAACTATTTCCCACAT
CTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
Found at i:1178430 original size:76 final size:76
Alignment explanation
Indices: 1178331--1179116 Score: 1402
Period size: 76 Copynumber: 10.4 Consensus size: 76
1178321 CTATTTCCCA
*
1178331 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1178396 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1178407 CATCTGTATGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1178472 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1178483 CATCTGTAAGTCCTGCAG-GTAATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 CATCTGTAAGTCCTGCAGTG-CATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1178547 AAGCCTTAGGGT
65 AAGCCTTAGGGT
*
1178559 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1178624 AGCCTTA-GG-
66 AGCCTTAGGGT
*
1178633 --TCTGTAAGTCCTGCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1178696 AACCTTAGGGT
66 AGCCTTAGGGT
1178707 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1178772 AGCCTTAGGGT
66 AGCCTTAGGGT
1178783 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1178848 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
1178859 CATATGTAAGTCCTGCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1178924 AACCTTAGGGT
66 AGCCTTAGGGT
**
1178935 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGAAAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1179000 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
1179011 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCAGAAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1179076 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1179087 CATCTGTAAGTCCTGCAGTGTATGATGTTT
1 CATCTGTAAGTCCTGCAGTGCATGATGTTT
1179117 TTAAGACCTC
Statistics
Matches: 682, Mismatches: 22, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
72 67 0.10
73 2 0.00
75 3 0.00
76 609 0.89
77 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:1179282 original size:15 final size:16
Alignment explanation
Indices: 1179264--1179368 Score: 112
Period size: 15 Copynumber: 6.6 Consensus size: 16
1179254 AATTTTTCGT
1179264 TTATTATTATTA-AAA
1 TTATTATTATTATAAA
1179279 TTATTATTA-TA-AATA
1 TTATTATTATTATAA-A
1179294 TTATTATTATTATTAAAA
1 TTATTATTATTA-T-AAA
1179312 TTATTATTATTATTAAA
1 TTATTATTATTA-TAAA
*
1179329 -TATTATTATTATATA
1 TTATTATTATTATAAA
1179344 TTA-TATTATTATTAAA
1 TTATTATTATTA-TAAA
*
1179360 TAATTATTA
1 TTATTATTA
1179369 CAAGCCCAAA
Statistics
Matches: 79, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
14 4 0.05
15 30 0.38
16 20 0.25
17 8 0.10
18 15 0.19
19 2 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTATTATTATTATAAA
Found at i:1179285 original size:18 final size:18
Alignment explanation
Indices: 1179264--1179357 Score: 124
Period size: 18 Copynumber: 5.3 Consensus size: 18
1179254 AATTTTTCGT
1179264 TTATTATTATTAAAATTA
1 TTATTATTATTAAAATTA
*
1179282 TTATTA-TA--AATATTA
1 TTATTATTATTAAAATTA
1179297 TTATTATTATTAAAATTA
1 TTATTATTATTAAAATTA
1179315 TTATTATTATTAAATATTA
1 TTATTATTATTAAA-ATTA
*
1179334 TTATTATATATT-ATATTA
1 TTATTAT-TATTAAAATTA
1179352 TTATTA
1 TTATTA
1179358 AATAATTATT
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
15 12 0.18
16 2 0.03
17 2 0.03
18 36 0.53
19 12 0.18
20 4 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATTATTATTAAAATTA
Found at i:1179368 original size:3 final size:3
Alignment explanation
Indices: 1179264--1179357 Score: 100
Period size: 3 Copynumber: 31.0 Consensus size: 3
1179254 AATTTTTCGT
** * * **
1179264 TTA TTA TTA TTA AAA TTA TTA TTA TAA ATA TTA TTA TTA TTA TTA AAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
1179312 TTA TTA TTA TTA TTAA ATA TTA TTA TTA TATA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
1179358 AATAATTATT
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
2 2 0.03
3 67 0.91
4 5 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:1180672 original size:14 final size:15
Alignment explanation
Indices: 1180653--1180692 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
1180643 TTGCTTTTAA
1180653 ATTTATTTTAA-ATT
1 ATTTATTTTAATATT
1180667 ATTTATTTATAATATT
1 ATTTATTT-TAATATT
*
1180683 ATTTTTTTTA
1 ATTTATTTTA
1180693 TTACTTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 8 0.35
15 5 0.22
16 10 0.43
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTATTTTAATATT
Found at i:1180709 original size:14 final size:13
Alignment explanation
Indices: 1180655--1180720 Score: 64
Period size: 13 Copynumber: 5.0 Consensus size: 13
1180645 GCTTTTAAAT
*
1180655 TTATTTTAAATTA
1 TTATTTTATATTA
*
1180668 TT-TATTTATAATA
1 TTAT-TTTATATTA
*
1180681 TTATTTT-TTTTA
1 TTATTTTATATTA
1180693 TTACTTTTATATTA
1 TTA-TTTTATATTA
1180707 TTATTTTCATATTA
1 TTATTTT-ATATTA
1180721 GTCACATAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
12 7 0.16
13 22 0.51
14 14 0.33
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATTTTATATTA
Found at i:1180737 original size:2 final size:2
Alignment explanation
Indices: 1180730--1180781 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
1180720 AGTCACATAA
1180730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1180772 AT AT AT AT AT
1 AT AT AT AT AT
1180782 TAAATAATAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1181164 original size:14 final size:14
Alignment explanation
Indices: 1181129--1181169 Score: 59
Period size: 12 Copynumber: 3.1 Consensus size: 14
1181119 TATTTCTAAA
1181129 TAAATAAATATATT
1 TAAATAAATATATT
1181143 T--ATAAATATATT
1 TAAATAAATATATT
*
1181155 TAAATTAATATATT
1 TAAATAAATATATT
1181169 T
1 T
1181170 TCTTAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TAAATAAATATATT
Found at i:1187444 original size:200 final size:202
Alignment explanation
Indices: 1186987--1187524 Score: 733
Period size: 200 Copynumber: 2.7 Consensus size: 202
1186977 ATTGTAATTA
* ** * * *
1186987 ATGCACAAAAGCATGCTTCCAAATTATTTTCATCGTGATTTTTATCCCGCTTC-AAATGTCTCTA
1 ATGCACAAAAGCATGCTTCCGAACCATTTTCAACGTGATTTTTATCCCGC-TCAAAATGGCTCAA
* *
1187051 ATGTGGCGATATTAGGCTCAACTTAAAGATAAGTTGTAATACTAGGCCTCTAAACTTATAAATTA
65 ATGTGGCGATATTAGGCTCAACTTAAAGATAAGTTGCAATACTGGGCCTCTAAACTTATAAATTA
* * * * * *
1187116 GGAAAAAAAAATGCTATTTGCAACCCGAAAATAACACTCGAACTTGCCTATGAAGTCATTTTACC
130 CGAAAAAAAAAT-CTATTTACAACCCGAAAATAACACTCAAACATGCCTATGAAGCCATTTTAAC
1187181 TTATACTTG
194 TTATACTTG
* * ** *
1187190 ATGCACAAAAGCATGCTTCTGAACCATTTTCAACGCGATTTTTATCTTGCTCAAAATGGCTCGAA
1 ATGCACAAAAGCATGCTTCCGAACCATTTTCAACGTGATTTTTATCCCGCTCAAAATGGCTCAAA
* * *
1187255 TTTGGCGATATTAGGCTCAACTTAAAGATAAGTTGCAATACTGGGCCTTTAAGCTTATAAATTAC
66 TGTGGCGATATTAGGCTCAACTTAAAGATAAGTTGCAATACTGGGCCTCTAAACTTATAAATTAC
*** *
1187320 GAAAAATCTAT-TATTTACAACCCGGAAATAACACTCAAACATGCCTATGAAGCCATTTTAACTT
131 GAAAAAAAAATCTATTTACAACCCGAAAATAACACTCAAACATGCCTATGAAGCCATTTTAACTT
1187384 -TACTTG
196 ATACTTG
* *
1187390 ATGCACAAAAGCATGCTTCCGAACCATTTTCAACGTTATTTCTATCCCGCTCAAAATGGCTCAAA
1 ATGCACAAAAGCATGCTTCCGAACCATTTTCAACGTGATTTTTATCCCGCTCAAAATGGCTCAAA
* ** *
1187455 TGTGGCGATATTAGGCTCAATTTAAAGATAAGTTGCAATACTGCACATC-AACACTTATAAATTA
66 TGTGGCGATATTAGGCTCAACTTAAAGATAAGTTGCAATACTGGGCCTCTAA-ACTTATAAATTA
1187519 CGAAAA
130 CGAAAA
1187525 TTTTATAGTT
Statistics
Matches: 294, Mismatches: 39, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
199 2 0.01
200 124 0.42
201 47 0.16
202 2 0.01
203 119 0.40
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (202 bp):
ATGCACAAAAGCATGCTTCCGAACCATTTTCAACGTGATTTTTATCCCGCTCAAAATGGCTCAAA
TGTGGCGATATTAGGCTCAACTTAAAGATAAGTTGCAATACTGGGCCTCTAAACTTATAAATTAC
GAAAAAAAAATCTATTTACAACCCGAAAATAACACTCAAACATGCCTATGAAGCCATTTTAACTT
ATACTTG
Found at i:1189458 original size:8 final size:8
Alignment explanation
Indices: 1189447--1189494 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
1189437 AGTTTTTGAA
1189447 AATTTTAT
1 AATTTTAT
1189455 AATTTTAT
1 AATTTTAT
*
1189463 AATTTTCT
1 AATTTTAT
1189471 AATTTTA-
1 AATTTTAT
*
1189478 AACTTTAT
1 AATTTTAT
1189486 --TTTTAT
1 AATTTTAT
1189492 AAT
1 AAT
1189495 ATAAATATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 5 0.15
7 6 0.18
8 22 0.67
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (8 bp):
AATTTTAT
Found at i:1191410 original size:2 final size:2
Alignment explanation
Indices: 1191403--1191464 Score: 90
Period size: 2 Copynumber: 31.0 Consensus size: 2
1191393 GTCAAAATTA
*
1191403 AT AT AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
1191445 AT AT AT GAT AC AT AT A- AT AT
1 AT AT AT -AT AT AT AT AT AT AT
1191465 TTTAAATGAA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 1 0.02
2 51 0.94
3 2 0.04
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1192399 original size:20 final size:20
Alignment explanation
Indices: 1192371--1192409 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1192361 CAAGAAATTA
1192371 ATTGATGCATCGATGCATGG
1 ATTGATGCATCGATGCATGG
* *
1192391 ATTGGTGCATCGGTGCATG
1 ATTGATGCATCGATGCATG
1192410 CCCTTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.31
Consensus pattern (20 bp):
ATTGATGCATCGATGCATGG
Found at i:1195116 original size:44 final size:44
Alignment explanation
Indices: 1195027--1195123 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
1195017 GCTCTTTTGC
* * *
1195027 ATCGATGCACATTCAAGGGCGTGCATCGGTGCATTAGCTGATGT
1 ATCGATGCACATTCAAGGGCATGCATCGGTGCACTAGCTAATGT
*
1195071 ATCGATGCACATTCAAAGGG-ATGCATCGGTGCACT-GTTAAGTGT
1 ATCGATGCACATTC-AAGGGCATGCATCGGTGCACTAGCTAA-TGT
1195115 ATCGATGCA
1 ATCGATGCA
1195124 TTAAGCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
43 3 0.06
44 39 0.83
45 5 0.11
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGGCATGCATCGGTGCACTAGCTAATGT
Found at i:1208623 original size:117 final size:117
Alignment explanation
Indices: 1208408--1208624 Score: 276
Period size: 117 Copynumber: 1.9 Consensus size: 117
1208398 AAATTAAAAC
* * *
1208408 TTTCTTTTTCAATATTTTCAAATTTCATTTTTGAAAGTTCTAAATCCTTCTTCAAGAGTTCATTT
1 TTTCTTTTTCAATATTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTTCATTT
* *
1208473 TGATTTTCAAAATCCATTTTCGTTTCTAGAAGAAGTTTGTTTAATTTGAAAT
66 TGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTTGAAAT
* * * *
1208525 TTTCTTTTTCAA-AGTTTTCAAATTTTAGTTTTGAAAGCTCTAACTCCTTTTTCAACATTTCATT
1 TTTCTTTTTCAATA-TTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTTCATT
* * * **
1208589 TTGTTTTTCCAAGTCTGTTTTAGCTTTC-AAAAGAAG
65 TTGATTTTCAAAATCCATTTTAG-TTTCTAAAAGAAG
1208625 ATCATTTTTA
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
116 1 0.01
117 79 0.94
118 4 0.05
ACGTcount: A:0.27, C:0.14, G:0.10, T:0.49
Consensus pattern (117 bp):
TTTCTTTTTCAATATTTTCAAATTTCAGTTTTGAAAGCTCTAAATCCTTCTTCAACAGTTCATTT
TGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTTGAAAT
Found at i:1210078 original size:45 final size:46
Alignment explanation
Indices: 1209998--1210085 Score: 151
Period size: 45 Copynumber: 1.9 Consensus size: 46
1209988 AAAAAGCCTA
* *
1209998 AGTGCATTGATGCATGGTCTTGTGCATCGATGCATCAAATGCACTG
1 AGTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCACTG
1210044 AGTGCATCGATGCATGG-CATGTGCATCGATGCATCAAATGCA
1 AGTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCA
1210086 TTCGATGTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
45 24 0.60
46 16 0.40
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (46 bp):
AGTGCATCGATGCATGGTCATGTGCATCGATGCATCAAATGCACTG
Found at i:1210133 original size:20 final size:20
Alignment explanation
Indices: 1210105--1210142 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1210095 CAAGAAATTA
1210105 ATTGATGCATCGATGCATGG
1 ATTGATGCATCGATGCATGG
* *
1210125 ATTGGTGCATCGGTGCAT
1 ATTGATGCATCGATGCAT
1210143 TCCCTTGAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.32
Consensus pattern (20 bp):
ATTGATGCATCGATGCATGG
Found at i:1210430 original size:2 final size:2
Alignment explanation
Indices: 1210411--1210465 Score: 80
Period size: 2 Copynumber: 29.0 Consensus size: 2
1210401 TAAAAGGAAG
*
1210411 AT AT AT A- AT AT A- AT -T AT AT AT AT AT AG AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1210450 AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT
1210466 TTGTATGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
1 3 0.06
2 45 0.94
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:1212636 original size:106 final size:108
Alignment explanation
Indices: 1212447--1212646 Score: 253
Period size: 106 Copynumber: 1.9 Consensus size: 108
1212437 CTTTATAAAA
* * * * *
1212447 AAGGAACGCTAGAGCTTTCTCAATCTTAAAAATTTGCTTTACTCCTCCATGAAAAAGGAACACTA
1 AAGGAACGCTAGAGCTTGCTCAATATTAAAAATTTGCTCTACTCCTCCATGAAAAACGAACACCA
* **
1212512 GAGCATGTTTTATATT-AAAATTT-CTCTATTCCTCTATAACT
66 GAGCATGCTCAATATTAAAAATTTGCTCTATTCCTCTATAACT
* * *
1212553 AAGGAACGGTAGATCTTGCTCAATATTAAAAATTTGCTCTACTCCTCTAT-AACAAACGAACACC
1 AAGGAACGCTAGAGCTTGCTCAATATTAAAAATTTGCTCTACTCCTCCATGAA-AAACGAACACC
* *
1212617 AGAGCTTGCTCAATCTTAAAAATTTGCTCT
65 AGAGCATGCTCAATATTAAAAATTTGCTCT
1212647 GCTCCTCCAT
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
105 2 0.03
106 65 0.83
107 7 0.09
108 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (108 bp):
AAGGAACGCTAGAGCTTGCTCAATATTAAAAATTTGCTCTACTCCTCCATGAAAAACGAACACCA
GAGCATGCTCAATATTAAAAATTTGCTCTATTCCTCTATAACT
Found at i:1212783 original size:160 final size:160
Alignment explanation
Indices: 1212441--1212872 Score: 377
Period size: 160 Copynumber: 2.7 Consensus size: 160
1212431 TTTGGACTTT
* * *
1212441 ATAAAAAAGGAACGCTAGAGCTTTCTCAATCTTAAAAATTTGCTTTACTCCTCCATGAAAAAGGA
1 ATAAAAAAGGAACGCTAGAGCTTGCTCAATCTTAAAAATTTGCTCTACTCCTCCATCAAAAAGGA
** ** * * * * * * *
1212506 ACACTAGAGCATGTTTTATATTAAAATTTCTCTATTCCTCTATAACTAAGGAACGGTAGATCTTG
66 ACACTAGAGCATACTCGATATTAAAATTTCTCTACTCCTCCACAACAAAGGAACGCTAGAGCTTA
* *
1212571 CTCAATATTAAAAATTTGCTCTACTCCTCT
131 CTCAATATTAAAAATTTGCTATACTCCTCC
* * * * * * *
1212601 ATAACAAACGAACACCAGAGCTTGCTCAATCTTAAAAATTTGCTCTGCTCCTCCATCAGAAAGGT
1 ATAAAAAAGGAACGCTAGAGCTTGCTCAATCTTAAAAATTTGCTCTACTCCTCCATCAAAAAGGA
* * *
1212666 ACACTAGAGCATACTCGATCTTAAAAGTTTTTTCTACTCCTCCACAACAAAGGAATGCTAGAGCT
66 ACACTAGAGCATACTCGATATTAAAA--TTTCTCTACTCCTCCACAACAAAGGAACGCTAGAGCT
* * * * **
1212731 TATTCGATCTT-AAAATTTGTTATACTTTTCC
129 TACTCAATATTAAAAATTTGCTATACTCCTCC
* * ** * *
1212762 ATAATAAAGGAA-GCTAGAGCTTGTTTGATCTTAAATATTT-TTCTACTCCTCCAT-AACAAAGG
1 ATAAAAAAGGAACGCTAGAGCTTGCTCAATCTTAAAAATTTGCTCTACTCCTCCATCAA-AAAGG
** ** * * * * *
1212824 AACGTTAGAGTTTGCTCGATCTTAAAATTTGCTTTGCTCCTCCATAACA
65 AACACTAGAGCATACTCGATATTAAAATTT-CTCTACTCCTCCACAACA
1212873 GAGAAACAAT
Statistics
Matches: 215, Mismatches: 53, Indels: 10
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 15 0.07
159 38 0.18
160 98 0.46
161 25 0.12
162 36 0.17
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (160 bp):
ATAAAAAAGGAACGCTAGAGCTTGCTCAATCTTAAAAATTTGCTCTACTCCTCCATCAAAAAGGA
ACACTAGAGCATACTCGATATTAAAATTTCTCTACTCCTCCACAACAAAGGAACGCTAGAGCTTA
CTCAATATTAAAAATTTGCTATACTCCTCC
Found at i:1212792 original size:52 final size:53
Alignment explanation
Indices: 1212441--1212933 Score: 336
Period size: 54 Copynumber: 9.2 Consensus size: 53
1212431 TTTGGACTTT
* *
1212441 ATAAAAAAGGAACGCTAGAGCTT-TCTCAATCTTAAAAATTTGCTT-TACTCCTCC
1 ATAACAAAGGAACGCTAGAGCTTGT-TCGATCTT-AAAATTTG-TTCTACTCCTCC
* * ** * * * *
1212495 ATGAA-AAAGGAACACTAGAGCATGTTTTATATTAAAATTT-CTCTATTCCTCT
1 AT-AACAAAGGAACGCTAGAGCTTGTTCGATCTTAAAATTTGTTCTACTCCTCC
* * * * * * * *
1212547 ATAACTAAGGAACGGTAGATCTTGCTCAATATTAAAAATTTGCTCTACTCCTCT
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTT-AAAATTTGTTCTACTCCTCC
* * * * * * *
1212601 ATAACAAACGAACACCAGAGCTTGCTCAATCTTAAAAATTTGCTCTGCTCCTCC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTT-AAAATTTGTTCTACTCCTCC
* * * * * ** *
1212655 ATCAGAAAGGTACACTAGAGCATACTCGATCTTAAAAGTTTTTTCTACTCCTCC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTTAAAA-TTTGTTCTACTCCTCC
* * * * **
1212709 ACAACAAAGGAATGCTAGAGCTTATTCGATCTTAAAATTTGTTATACTTTTCC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTTAAAATTTGTTCTACTCCTCC
* *
1212762 ATAATAAAGGAA-GCTAGAGCTTGTTTGATCTTAAATATTT-TTCTACTCCTCC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTTAAA-ATTTGTTCTACTCCTCC
* * * *
1212814 ATAACAAAGGAACGTTAGAGTTTGCTCGATCTTAAAATTTGCTT-TGCTCCTCC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTTAAAATTTG-TTCTACTCCTCC
* * ** * * * * * *
1212867 ATAACAGAGAAACAATAAAGCTTCTGCGATCTTCAAAATTTGGTCTACT-TTGTC
1 ATAACAAAGGAACGCTAGAGCTTGTTCGATCTT-AAAATTTGTTCTACTCCT-CC
1212921 ATAACAAAGGAAC
1 ATAACAAAGGAAC
1212934 CATAGGGCTA
Statistics
Matches: 348, Mismatches: 77, Indels: 28
0.77 0.17 0.06
Matches are distributed among these distances:
51 3 0.01
52 74 0.21
53 97 0.28
54 171 0.49
55 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.32
Consensus pattern (53 bp):
ATAACAAAGGAACGCTAGAGCTTGTTCGATCTTAAAATTTGTTCTACTCCTCC
Found at i:1212868 original size:105 final size:106
Alignment explanation
Indices: 1212590--1212870 Score: 300
Period size: 105 Copynumber: 2.6 Consensus size: 106
1212580 AAAAATTTGC
* * * * * *
1212590 TCTACTCCTCTATAACAAACGAACACCAGAGCTTGCTCAATCTTAAAAATTTGCTCTGCTCCTCC
1 TCTACTCCTCCATAACAAAGGAACGCTAGAGCTTGCTCGATCTT-AAAATTTGCTTTGCTCCTCC
*
1212655 ATCAGAAAGGTACACTAGAGCATACTCGATCTTAAAAGTTTTT
65 ATAAGAAAGGTACACTAGAGCATACTCGATCTTAAAAG-TTTT
* * ** * **
1212698 TCTACTCCTCCACAACAAAGGAATGCTAGAGCTTATTCGATCTTAAAATTTG-TTATACTTTTCC
1 TCTACTCCTCCATAACAAAGGAACGCTAGAGCTTGCTCGATCTTAAAATTTGCTT-TGCTCCTCC
* * ** *
1212762 ATAATAAAGG-A-AGCTAGAGCTTGTTTGATCTTAAATA-TTTT
65 ATAAGAAAGGTACA-CTAGAGCATACTCGATCTTAAA-AGTTTT
* *
1212803 TCTACTCCTCCATAACAAAGGAACGTTAGAGTTTGCTCGATCTTAAAATTTGCTTTGCTCCTCCA
1 TCTACTCCTCCATAACAAAGGAACGCTAGAGCTTGCTCGATCTTAAAATTTGCTTTGCTCCTCCA
1212868 TAA
66 TAA
1212871 CAGAGAAACA
Statistics
Matches: 141, Mismatches: 28, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
105 61 0.43
106 22 0.16
107 23 0.16
108 35 0.25
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (106 bp):
TCTACTCCTCCATAACAAAGGAACGCTAGAGCTTGCTCGATCTTAAAATTTGCTTTGCTCCTCCA
TAAGAAAGGTACACTAGAGCATACTCGATCTTAAAAGTTTT
Found at i:1217820 original size:3 final size:3
Alignment explanation
Indices: 1217800--1217850 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
1217790 CTGGGTTCTA
* *
1217800 TAT T-T TAT TAA T-T TAT TAT TAA TAT TAT TAT T-T ATAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
1217843 TAT TAT TA
1 TAT TAT TA
1217851 ATTTACATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 4 0.10
3 35 0.88
4 1 0.03
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:1217829 original size:12 final size:12
Alignment explanation
Indices: 1217799--1217850 Score: 72
Period size: 12 Copynumber: 4.5 Consensus size: 12
1217789 TCTGGGTTCT
1217799 ATATT-TTATTA
1 ATATTATTATTA
1217810 AT-TTATTATTA
1 ATATTATTATTA
*
1217821 ATATTATTATTT
1 ATATTATTATTA
1217833 ATATTATTATTA
1 ATATTATTATTA
*
1217845 TTATTA
1 ATATTA
1217851 ATTTACATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 2 0.06
11 10 0.28
12 24 0.67
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTATTATTA
Found at i:1218451 original size:15 final size:15
Alignment explanation
Indices: 1218424--1218467 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
1218414 AAACATAACG
1218424 AAAAAAAGAAAATCA
1 AAAAAAAGAAAATCA
1218439 TAAAAAAAG-AAATCA
1 -AAAAAAAGAAAATCA
1218454 AATAAAAAGGAAAA
1 AA-AAAAA-GAAAA
1218468 GAGAGGGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 9 0.36
17 3 0.12
ACGTcount: A:0.77, C:0.05, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAAAAAGAAAATCA
Found at i:1218603 original size:20 final size:20
Alignment explanation
Indices: 1218580--1218621 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
1218570 CTAGGACAAT
1218580 GGAAGGGGATTTA-GGATAAG
1 GGAAGGGGATTTATGGA-AAG
1218600 GGAAGGGGATTTATGGAAAG
1 GGAAGGGGATTTATGGAAAG
1218620 GG
1 GG
1218622 TTGGTCGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.48, T:0.19
Consensus pattern (20 bp):
GGAAGGGGATTTATGGAAAG
Found at i:1219833 original size:5 final size:5
Alignment explanation
Indices: 1219813--1219853 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
1219803 CTCTTTTCAC
* *
1219813 TTTTA TTCTG TTTTA TTTTA TTTTA TTTTA TTTTA TATTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T-TTTA
1219854 CGAAAAATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
5 27 0.87
6 4 0.13
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:1224897 original size:66 final size:65
Alignment explanation
Indices: 1224819--1224943 Score: 155
Period size: 65 Copynumber: 1.9 Consensus size: 65
1224809 TTGAGACAAA
* * * *
1224819 CTTTGAGATTGTTTCTCATGAAACAAATTTTGTCTC-CTTTGAGATAGT-TTCTCTTGAAACACC
1 CTTTGAGATTGTTTCCCATGAAAC-AAGTTTGCCTCTC-TTGAGACA-TCTTCTCTTGAAACACC
1224882 CAT
63 CAT
* *
1224885 CTTTGAGTTTGTTTCCCTTGAAACAAGTTTGCCTCTCTTGAGACATCTTCTCTTGAAAC
1 CTTTGAGATTGTTTCCCATGAAACAAGTTTGCCTCTCTTGAGACATCTTCTCTTGAAAC
1224944 CATTATCCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
64 1 0.02
65 28 0.55
66 22 0.43
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (65 bp):
CTTTGAGATTGTTTCCCATGAAACAAGTTTGCCTCTCTTGAGACATCTTCTCTTGAAACACCCAT
Found at i:1225503 original size:3 final size:3
Alignment explanation
Indices: 1225495--1225536 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
1225485 TTTTATTAAT
* *
1225495 TTA TTA TTA TTA TTA ATA TTA TTA TT- TATA TAA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
1225537 ATTTACATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 1 0.03
3 31 0.94
4 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:1225548 original size:18 final size:18
Alignment explanation
Indices: 1225495--1225545 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 18
1225485 TTTTATTAAT
*
1225495 TTATTATTA-TTA-TTAA
1 TTATTATTATTTACATAA
*
1225511 -TATTATTATTTATATAA
1 TTATTATTATTTACATAA
1225528 TTATTATTAATTTACATA
1 TTATTATT-ATTTACATA
1225546 TTACATTTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 8 0.28
16 3 0.10
17 3 0.10
18 7 0.24
19 8 0.28
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TTATTATTATTTACATAA
Found at i:1226992 original size:113 final size:114
Alignment explanation
Indices: 1226857--1227085 Score: 451
Period size: 113 Copynumber: 2.0 Consensus size: 114
1226847 TTATTTTTCC
1226857 AGTGTTTACATTTAAGTAGCATATTCACATATTATGCTATATTTGCTTTTATTTTAATTTGACCC
1 AGTGTTTACATTTAAGTAGCATATTCACATATTATGCTATATTTGCTTTTATTTTAATTTGACCC
1226922 AAAAGGTTATGTTTTTCTGTTTTGATCACTATTTAATAGGAATGTATAT
66 AAAAGGTTATGTTTTTCTGTTTTGATCACTATTTAATAGGAATGTATAT
1226971 AGTG-TTACATTTAAGTAGCATATTCACATATTATGCTATATTTGCTTTTATTTTAATTTGACCC
1 AGTGTTTACATTTAAGTAGCATATTCACATATTATGCTATATTTGCTTTTATTTTAATTTGACCC
1227035 AAAAGGTTATGTTTTTCTGTTTTGATCACTATTTAATAGGAATGTATAT
66 AAAAGGTTATGTTTTTCTGTTTTGATCACTATTTAATAGGAATGTATAT
1227084 AG
1 AG
1227086 GTATAATTAC
Statistics
Matches: 115, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
113 111 0.97
114 4 0.03
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (114 bp):
AGTGTTTACATTTAAGTAGCATATTCACATATTATGCTATATTTGCTTTTATTTTAATTTGACCC
AAAAGGTTATGTTTTTCTGTTTTGATCACTATTTAATAGGAATGTATAT
Found at i:1228211 original size:83 final size:83
Alignment explanation
Indices: 1228072--1228239 Score: 318
Period size: 83 Copynumber: 2.0 Consensus size: 83
1228062 GTGTTTTTCA
1228072 AAATTATATTTCATCGCGTACCCCGACATCAATTTTTCAAAACTGCAACTGAAGTTTTGCCATAC
1 AAATTATATTTCATCGCGTACCCCGACATCAATTTTTCAAAACTGCAACTGAAGTTTTGCCATAC
1228137 AAGAGCAACCACCTAAAC
66 AAGAGCAACCACCTAAAC
* *
1228155 AAATTATATTTCATCGCGTACCCTGACATCAATTTTTCAAAACTGCAACTGAAGTTTTGGCATAC
1 AAATTATATTTCATCGCGTACCCCGACATCAATTTTTCAAAACTGCAACTGAAGTTTTGCCATAC
1228220 AAGAGCAACCACCTAAAC
66 AAGAGCAACCACCTAAAC
1228238 AA
1 AA
1228240 GTAGTGAACA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (83 bp):
AAATTATATTTCATCGCGTACCCCGACATCAATTTTTCAAAACTGCAACTGAAGTTTTGCCATAC
AAGAGCAACCACCTAAAC
Found at i:1232525 original size:15 final size:15
Alignment explanation
Indices: 1232501--1232532 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1232491 AGTTACAAAC
*
1232501 ATAAGGAATAATAAA
1 ATAAGAAATAATAAA
1232516 ATAAGAAATAATAAA
1 ATAAGAAATAATAAA
1232531 AT
1 AT
1232533 TAAATAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.22
Consensus pattern (15 bp):
ATAAGAAATAATAAA
Found at i:1234395 original size:20 final size:20
Alignment explanation
Indices: 1234372--1234410 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1234362 CCTACCTTTG
1234372 GTATCAATACCCAATGAATA
1 GTATCAATACCCAATGAATA
** *
1234392 GTATCGGTACCCTATGAAT
1 GTATCAATACCCAATGAAT
1234411 CGAGTATTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (20 bp):
GTATCAATACCCAATGAATA
Found at i:1243733 original size:29 final size:29
Alignment explanation
Indices: 1243715--1243772 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
1243705 AAAGTGAAAG
1243715 ACAAAAG-GTTTTATAAATTATAATGAAGT
1 ACAAAAGTG-TTTATAAATTATAATGAAGT
* *
1243744 ACAAAATTGTTTATAAATTATAATAAAGT
1 ACAAAAGTGTTTATAAATTATAATGAAGT
1243773 GTACAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.36
Consensus pattern (29 bp):
ACAAAAGTGTTTATAAATTATAATGAAGT
Found at i:1243785 original size:29 final size:28
Alignment explanation
Indices: 1243723--1243799 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 28
1243713 AGACAAAAGG
*
1243723 TTTTATAAATTATAATGAAGTACAAAAT
1 TTTTATAAATTATAATAAAGTACAAAAT
*
1243751 TGTTTATAAATTATAATAAAGTGTAC-AACT
1 T-TTTATAAATTATAATAAA--GTACAAAAT
*
1243781 TTTTATAAATTATGATAAA
1 TTTTATAAATTATAATAAA
1243800 AGACACATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.02
29 34 0.79
30 4 0.09
31 4 0.09
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.42
Consensus pattern (28 bp):
TTTTATAAATTATAATAAAGTACAAAAT
Found at i:1243827 original size:29 final size:29
Alignment explanation
Indices: 1243780--1243854 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 29
1243770 AGTGTACAAC
**
1243780 TTTTTATAAATTATGATAAAAGACACATTT
1 TTTTTATAAATTACAATAAAAGACA-ATTT
*
1243810 TTTTTATAAA-TACAATAAAGGACAA--T
1 TTTTTATAAATTACAATAAAAGACAATTT
* *
1243836 TTCTCATAAATTACAATAA
1 TTTTTATAAATTACAATAA
1243855 TACTATCATT
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 9 0.23
27 8 0.21
28 1 0.03
29 11 0.28
30 10 0.26
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (29 bp):
TTTTTATAAATTACAATAAAAGACAATTT
Found at i:1247099 original size:22 final size:22
Alignment explanation
Indices: 1247071--1247124 Score: 99
Period size: 22 Copynumber: 2.5 Consensus size: 22
1247061 TACAGTACGG
*
1247071 ATGCTGGAAGTAGGCTGCACGA
1 ATGCTGGAAGTAGGCCGCACGA
1247093 ATGCTGGAAGTAGGCCGCACGA
1 ATGCTGGAAGTAGGCCGCACGA
1247115 ATGCTGGAAG
1 ATGCTGGAAG
1247125 CGGGTTGCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.28, C:0.19, G:0.37, T:0.17
Consensus pattern (22 bp):
ATGCTGGAAGTAGGCCGCACGA
Found at i:1248489 original size:6 final size:6
Alignment explanation
Indices: 1248478--1249379 Score: 1499
Period size: 6 Copynumber: 152.8 Consensus size: 6
1248468 GTAAAAGACT
1248478 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248526 TACATA TACATA TACATA TAC--A TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248572 TACATA TACATA TACATA TACATA T-CATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248619 TACATA TACATA TACATA TACATA TACATA TACATACA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACAT--A TACATA TACATA
1248669 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
* * *
1248717 TACATA TACATA T--ATA CATATA TACATA TACATA TACCTA TAC--A
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248761 TACATA TACATA TAC-TA TACATA T-C--A TACATAA TACATA TACAT-
1 TACATA TACATA TACATA TACATA TACATA TACAT-A TACATA TACATA
1248805 TACATA TACATA TAC--A TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248851 TACATACA TACATA TACATA TACATA TACATA TACATA TACATA TACAT-
1 TACAT--A TACATA TACATA TACATA TACATA TACATA TACATA TACATA
* *
1248900 TACATA TTATACA TACAT- TACATA TACATA T-CATA TACATA TACATA
1 TACATA -TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248947 TACATA TACATA TACATA TACATA TACATA TACATA TACA-A TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1248994 -ACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249041 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249089 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249137 TACATA TACATA TACA-A TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
*
1249184 TACATA TAC--A TACA-A TACATA TAGACATA TAAATA TACATA TACATA
1 TACATA TACATA TACATA TACATA T--ACATA TACATA TACATA TACATA
* *
1249231 TACATA TACAGA TACCTA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249279 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249327 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1 TACATA TACATA TACATA TACATA TACATA TACATA TACATA TACATA
1249375 TACAT
1 TACAT
1249380 GTATTTGAAA
Statistics
Matches: 852, Mismatches: 14, Indels: 60
0.92 0.02 0.06
Matches are distributed among these distances:
3 2 0.00
4 20 0.02
5 51 0.06
6 751 0.88
7 10 0.01
8 18 0.02
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
TACATA
Found at i:1252490 original size:20 final size:20
Alignment explanation
Indices: 1252465--1252519 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
1252455 AAAAATGTAT
1252465 AATAAAATAAAATAATAATA
1 AATAAAATAAAATAATAATA
*
1252485 AATAAAAGAGAAAT-ATAATA
1 AATAAAATA-AAATAATAATA
*
1252505 AA-ATAAT-AAATAATA
1 AATAAAATAAAATAATA
1252520 GTAGTAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 4 0.13
18 3 0.10
19 3 0.10
20 16 0.53
21 4 0.13
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
AATAAAATAAAATAATAATA
Found at i:1252517 original size:15 final size:15
Alignment explanation
Indices: 1252470--1252519 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
1252460 TGTATAATAA
1252470 AATAAAATAAT-AAT
1 AATAAAATAATAAAT
*
1252484 AAATAAAAGAGA-AATAT
1 -AATAAAATA-ATAA-AT
1252501 AATAAAATAATAAAT
1 AATAAAATAATAAAT
1252516 AATA
1 AATA
1252520 GTAGTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 15 0.52
16 12 0.41
17 2 0.07
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:1252535 original size:28 final size:27
Alignment explanation
Indices: 1252468--1252535 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
1252458 AATGTATAAT
1252468 AAAATAAAATAATAATAAATAAAAGAGA
1 AAAATAAAA-AATAATAAATAAAAGAGA
* *
1252496 AATATAATAAAATAATAAATAATAGTAGTA
1 AAAATAA-AAAATAATAAATAAAAG-AG-A
1252526 AAAATAAAAA
1 AAAATAAAAA
1252536 GGGATTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 20 0.59
29 7 0.21
30 7 0.21
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (27 bp):
AAAATAAAAAATAATAAATAAAAGAGA
Found at i:1252550 original size:13 final size:13
Alignment explanation
Indices: 1252532--1252561 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1252522 AGTAAAAATA
1252532 AAAAGGGATTTTT
1 AAAAGGGATTTTT
*
1252545 AAAAGGTATTTTT
1 AAAAGGGATTTTT
1252558 AAAA
1 AAAA
1252562 TAAAAGATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (13 bp):
AAAAGGGATTTTT
Found at i:1252580 original size:18 final size:18
Alignment explanation
Indices: 1252559--1252600 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
1252549 GGTATTTTTA
1252559 AAATAAAA-GATAATAATT
1 AAATAAAAGGA-AATAATT
1252577 AAATAAAAGGAAATAATT
1 AAATAAAAGGAAATAATT
1252595 AAATAA
1 AAATAA
1252601 TAATCTAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (18 bp):
AAATAAAAGGAAATAATT
Found at i:1254235 original size:2 final size:2
Alignment explanation
Indices: 1254228--1254270 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
1254218 TCATTCCCTT
1254228 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1254270 T
1 T
1254271 TCGAACAAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1255579 original size:20 final size:20
Alignment explanation
Indices: 1255535--1255582 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
1255525 TGTTTAGAGA
*
1255535 AAAATAAAATAAAATTAATT
1 AAAATAAAATAAAATTAATG
*
1255555 CAAATAAAAT-AAATATAATG
1 AAAATAAAATAAAAT-TAATG
1255575 AAAATAAA
1 AAAATAAA
1255583 GTTCGCTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 4 0.17
20 20 0.83
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (20 bp):
AAAATAAAATAAAATTAATG
Found at i:1261186 original size:18 final size:18
Alignment explanation
Indices: 1261163--1261205 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
1261153 GTTTTTTTAA
1261163 AAATAAAAGATAAA-AATT
1 AAATAAAAGA-AAATAATT
1261181 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAATAATT
1261199 AAATAAA
1 AAATAAA
1261206 TAATCTAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAATAATT
Found at i:1261892 original size:42 final size:45
Alignment explanation
Indices: 1261845--1261948 Score: 121
Period size: 43 Copynumber: 2.4 Consensus size: 45
1261835 AACACTTAGA
1261845 ACTATTTAAACTAAAATACCTAAA-AC-AA-AGATAA-ACTAAAAC
1 ACTATTTAAACTAAAATACCTAAATACTAATAGA-AATACTAAAAC
* * * *
1261887 ACTATTTAAAATAATAT-CCTAAATCCTAATTGAAATACTAAAAC
1 ACTATTTAAACTAAAATACCTAAATACTAATAGAAATACTAAAAC
1261931 -CTATTTAAACTAAAATAC
1 ACTATTTAAACTAAAATAC
1261949 AAAGATAAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
41 6 0.12
42 16 0.31
43 18 0.35
44 11 0.22
ACGTcount: A:0.54, C:0.16, G:0.02, T:0.28
Consensus pattern (45 bp):
ACTATTTAAACTAAAATACCTAAATACTAATAGAAATACTAAAAC
Found at i:1265565 original size:38 final size:37
Alignment explanation
Indices: 1265471--1265593 Score: 192
Period size: 37 Copynumber: 3.3 Consensus size: 37
1265461 TTTATTTTGT
* * *
1265471 TCGGGTCGGGTCGAGTTTTTTAAGTTTAATATTCGGG
1 TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGG
*
1265508 TCGAGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGG
1 TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGG
*
1265545 TCGGGTCGGGTCGGGTTTTTTTAAGTGTGATATTCGAG
1 TCGGGTCGGGTCGGG-TTTTTTAAGTGTGATATTCGGG
1265583 TCGGGTCGGGT
1 TCGGGTCGGGT
1265594 TTGGGTTTAG
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
37 47 0.59
38 32 0.41
ACGTcount: A:0.13, C:0.11, G:0.37, T:0.38
Consensus pattern (37 bp):
TCGGGTCGGGTCGGGTTTTTTAAGTGTGATATTCGGG
Done.