genome.fa.s2950.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002950.1 Hibiscus syriacus cultivar Beakdansim tig00006089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129564

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2035--2232	101	2.0	100	98	1	387	30	17	24	27	1.97
4101--4152	24	2.0	26	89	10	81	28	25	13	32	1.93
5986--6126	39	3.7	38	78	11	128	34	21	28	15	1.94
7243--7290	18	2.7	18	93	0	78	58	0	27	14	1.37
7991--8032	16	2.6	16	96	0	75	35	21	26	16	1.94
8608--8826	41	5.3	41	75	11	146	28	14	23	34	1.93
8668--8796	41	3.1	41	81	10	156	28	13	22	34	1.93
8614--8864	82	3.1	82	80	6	246	29	13	22	33	1.93
9278--9329	22	2.4	22	90	0	77	42	7	15	34	1.75
10461--10539	41	1.9	42	81	2	97	36	17	10	35	1.84
10628--10709	42	2.0	41	85	2	110	34	17	17	31	1.93
12394--12464	36	2.0	36	94	0	124	42	15	9	32	1.80
15553--15638	21	4.1	21	85	5	111	43	19	36	1	1.59
15802--15954	43	3.6	43	81	2	146	30	24	15	29	1.96
21765--22250	251	1.9	252	94	0	857	41	9	11	37	1.73
23361--23392	17	1.9	17	93	6	57	56	6	0	37	1.25
25192--25238	21	2.2	21	96	0	85	27	31	19	21	1.97
25257--25617	21	17.2	21	92	0	551	21	24	20	33	1.97
26191--26221	6	5.2	6	96	0	53	0	19	45	35	1.51
26314--26523	21	10.0	21	92	4	327	33	23	23	20	1.97
29791--30068	20	13.6	20	75	8	148	39	19	23	17	1.92
29934--30058	63	2.0	63	91	0	205	36	17	27	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29895--30068	83	2.1	83	89	0	258	36	18	25	19	1.94
29916--30066	40	3.7	40	83	5	185	36	17	25	19	1.94
30156--30278	6	20.5	6	100	0	246	33	50	16	0	1.45
30969--31005	6	6.5	6	96	3	60	0	16	54	29	1.43
31117--31254	20	6.8	20	85	4	159	20	26	18	34	1.95
31102--31275	40	4.2	40	80	6	177	20	25	18	36	1.95
31291--31342	20	2.6	20	93	0	86	11	17	17	53	1.72
31329--31379	19	2.6	20	90	3	77	15	17	23	43	1.88
31674--31710	17	2.2	16	90	4	56	64	8	0	27	1.21
37629--37686	12	5.0	11	78	12	55	34	25	3	36	1.73
38065--38199	64	2.1	64	83	5	166	27	22	18	31	1.97
38065--38219	64	2.4	64	79	6	154	27	23	18	30	1.98
44396--44430	12	2.9	12	91	0	52	37	25	5	31	1.80
44779--44915	64	2.1	64	89	2	204	26	19	20	33	1.97
44802--44963	64	2.5	64	85	4	193	27	22	19	31	1.97
44996--45049	21	2.6	21	100	0	108	27	22	22	27	1.99
51285--51611	109	3.0	109	97	1	600	31	22	23	22	1.99
54482--54518	18	2.1	18	85	14	51	32	13	10	43	1.79
57099--57130	16	1.9	17	93	6	57	59	21	12	6	1.55
57200--57264	16	4.1	16	91	0	103	53	24	13	7	1.66
57499--57550	11	4.6	11	92	4	86	26	25	21	26	1.99
57499--57550	23	2.3	22	93	3	86	26	25	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58376--58427	14	4.0	14	78	19	67	53	25	13	7	1.65
58352--58426	24	3.1	24	86	3	98	57	21	10	10	1.62
60551--60635	42	2.0	42	93	0	143	44	9	30	15	1.78
62462--62495	15	2.3	15	100	0	68	47	17	0	35	1.48
67961--68001	2	20.5	2	100	0	82	48	0	0	51	1.00
68328--68420	2	46.5	2	100	0	186	49	0	0	50	1.00
68625--68662	17	2.4	16	83	12	51	55	0	5	39	1.23
69636--69692	28	2.0	28	93	0	96	31	17	21	29	1.96
77630--77670	21	2.0	21	85	9	57	58	2	2	36	1.24
86665--86700	2	18.0	2	100	0	72	50	0	0	50	1.00
88236--88265	13	2.3	13	94	0	51	6	6	3	83	0.90
90237--90270	15	2.3	15	94	0	59	8	20	64	5	1.43
92566--92611	21	2.2	21	88	11	69	45	36	0	17	1.49
99489--99663	64	2.8	64	83	8	216	33	20	19	26	1.96
100410--100631	103	2.2	102	98	0	426	25	13	25	36	1.92
100643--100705	23	2.7	23	87	0	90	19	26	26	26	1.99
105180--105404	64	3.5	64	83	4	267	32	20	18	28	1.96
106156--106378	103	2.2	103	100	0	446	25	13	25	36	1.91
106392--106452	23	2.7	23	86	0	77	21	27	22	27	1.99
110593--110632	19	2.2	19	90	4	64	47	0	5	47	1.24
110766--110808	10	4.6	9	81	18	52	20	0	2	76	0.89
115965--116073	51	2.2	51	88	5	159	35	11	15	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121723--121762	19	2.0	20	85	4	55	50	0	2	47	1.14
121790--121863	31	2.4	31	86	2	94	33	8	16	41	1.77
121790--121878	31	2.8	31	81	5	81	34	6	15	42	1.74
126357--126418	30	2.1	29	82	8	72	48	0	3	48	1.17

Tables:   1

The End!