genome.fa.s2952.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002952.1 Hibiscus syriacus cultivar Beakdansim tig00006093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45722

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1390--1482	33	2.8	32	72	6	87	41	10	8	38	1.71
2422--2459	14	2.6	15	84	16	53	2	31	0	65	1.06
11679--11733	22	2.5	22	75	0	56	29	9	23	38	1.85
12124--12178	22	2.5	22	75	0	56	29	9	23	38	1.85
11673--12519	445	1.9	445	99	0	1676	28	21	19	30	1.97
15566--15654	29	3.2	29	69	15	96	40	16	1	41	1.56
19033--19095	11	5.9	11	69	14	51	57	3	1	38	1.24
19146--19200	14	3.9	14	80	4	58	49	14	0	36	1.44
19138--19184	21	2.2	21	77	7	51	51	19	0	29	1.47
19251--19312	21	3.0	20	73	4	52	50	20	0	29	1.49
20980--21018	11	3.5	11	89	0	60	30	10	23	35	1.88
34570--34635	31	2.1	31	91	5	107	30	9	18	42	1.81
34642--34880	102	2.4	100	79	5	232	39	12	19	27	1.89
35028--35505	106	4.5	106	81	3	519	23	18	23	34	1.96
35027--35505	217	2.2	211	82	3	575	23	18	23	34	1.96
36165--36254	32	2.8	32	84	0	117	42	18	10	28	1.83
37316--37381	12	5.3	12	82	12	71	3	13	3	80	0.95
37289--37381	24	3.7	23	77	15	69	2	12	4	80	0.95
37309--37381	36	2.0	38	86	5	105	2	12	4	80	0.95
38889--38992	52	2.0	52	86	0	145	25	25	14	35	1.93
40505--40567	20	3.2	19	76	10	56	76	3	3	17	1.05
40505--40542	15	2.4	16	87	12	53	81	2	2	13	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40525--40576	24	2.1	24	86	10	70	69	3	5	21	1.26
41861--41922	2	31.5	2	96	3	117	50	0	0	50	1.00
43045--43109	31	2.1	31	85	2	87	23	24	16	35	1.95
43056--43126	31	2.3	31	87	4	99	21	26	18	33	1.96
44231--44354	40	3.1	40	76	4	124	35	24	15	25	1.94
44312--44498	20	9.3	19	76	13	162	41	23	15	19	1.90
44287--44498	40	5.3	40	80	9	172	41	23	15	20	1.90
44312--44498	60	3.1	62	87	6	235	41	23	15	19	1.90
44312--44498	61	3.1	60	85	6	218	41	23	15	19	1.90
44505--44554	20	2.5	20	93	0	91	24	18	12	46	1.82
44673--44719	22	2.1	22	96	0	85	21	44	14	19	1.86

Tables:   1

The End!