Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002953.1 Hibiscus syriacus cultivar Beakdansim tig00006097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51835

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234--267
17
2.0
17
88
0
50
17
8
5
67
1.37
6357--6413
28
2.0
28
83
6
71
47
15
12
24
1.80
6388--6513
43
2.9
42
80
4
135
29
15
21
34
1.94
13523--13607
2
43.5
2
91
4
138
47
0
0
52
1.00
15162--15202
15
2.7
16
77
7
50
34
4
7
53
1.50
15870--15907
11
3.5
11
85
3
51
68
2
2
26
1.16
15917--15982
4
15.5
4
75
12
51
66
3
4
25
1.25
16299--16600
153
2.0
153
86
1
383
46
7
16
29
1.75
18064--18142
21
3.7
21
70
14
63
54
0
6
39
1.26
19601--19631
16
1.9
16
100
0
62
29
19
12
38
1.89
19602--19643
16
2.7
16
88
3
59
28
21
11
38
1.89
23648--23689
21
2.0
21
85
0
57
45
9
21
23
1.81
24208--24301
44
2.1
44
90
3
145
45
26
7
20
1.77
45396--45598
15
13.5
15
87
9
281
48
0
1
50
1.10
45396--45598
59
3.4
58
87
8
275
48
0
1
50
1.10
45396--45598
74
2.7
74
88
7
288
48
0
1
50
1.10
45605--45694
22
3.7
22
73
21
81
37
2
8
51
1.46
45577--45742
53
3.1
52
90
3
251
36
1
10
51
1.44
45710--45764
26
2.2
26
83
3
67
30
0
18
50
1.47
45673--45819
79
1.9
80
94
1
260
34
1
13
51
1.50
45838--45877
19
2.1
19
95
0
71
35
0
15
50
1.44
45857--46162
32
9.6
32
72
16
203
33
0
13
52
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45911--46020
26
4.0
27
73
18
86
28
0
17
54
1.43
46004--46045
21
2.0
22
95
4
77
35
0
14
50
1.43
45920--46043
26
4.7
27
68
21
66
31
0
16
52
1.44
45678--46274
219
2.7
216
92
3
993
33
0
13
52
1.45
46026--46259
80
2.9
80
88
7
323
33
0
13
52
1.46
46222--46263
22
1.9
22
95
0
75
35
0
11
52
1.38
46288--46347
31
1.9
31
93
0
102
43
10
6
40
1.64
51478--51593
52
2.2
52
92
3
189
23
22
13
40
1.90

Tables:   1

The End!