genome.fa.s2954.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002954.1 Hibiscus syriacus cultivar Beakdansim tig00006098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87571

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530--582	22	2.2	24	83	9	74	18	5	5	69	1.28
725--753	14	2.0	15	93	6	51	68	0	10	20	1.18
8754--8793	21	1.9	21	85	10	55	25	37	25	12	1.91
9164--9209	25	1.9	24	86	8	67	52	4	4	39	1.41
13955--14022	33	2.1	33	100	0	136	42	14	20	22	1.88
20888--20938	2	25.5	2	82	7	59	45	1	3	49	1.32
20955--20988	18	1.9	18	88	5	52	20	0	0	79	0.73
24260--24399	36	3.9	36	85	4	194	36	19	23	20	1.95
24250--24399	72	2.1	71	92	1	246	37	18	23	20	1.94
29026--29068	2	21.5	2	100	0	86	51	0	0	48	1.00
31304--31331	6	4.7	6	100	0	56	14	50	0	35	1.43
40098--40170	21	3.5	21	81	3	85	21	21	19	36	1.95
40188--40261	20	3.6	21	87	5	98	39	20	21	18	1.93
40824--41002	19	10.1	19	68	19	100	13	24	18	43	1.86
40824--40940	52	2.2	52	90	0	180	13	22	19	44	1.86
40879--40977	33	3.0	33	90	1	144	14	25	20	40	1.89
43665--43707	21	2.0	21	81	0	50	30	30	25	13	1.94
43687--43901	66	3.3	66	96	1	378	29	27	26	16	1.97
44434--44492	22	2.6	23	86	2	84	20	25	28	25	1.99
44434--44500	22	3.0	23	84	2	64	20	23	26	28	1.99
46654--46744	14	5.9	14	72	20	74	48	24	16	10	1.78
46638--46749	33	3.4	33	95	1	199	47	23	17	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46756--46852	19	5.6	19	65	22	70	12	17	21	48	1.80
46778--46836	14	3.9	14	72	20	55	10	15	23	50	1.74
46761--46852	33	2.8	33	93	0	157	11	16	21	50	1.77
46837--46880	20	2.2	20	88	4	63	20	22	18	38	1.93
46845--46891	20	2.3	20	88	0	67	19	19	23	38	1.93
47373--47417	18	2.5	18	85	0	63	17	13	42	26	1.86
48736--48778	20	2.2	20	86	0	59	53	18	16	11	1.72
48749--48793	20	2.2	20	92	0	72	40	26	15	17	1.90
49058--49101	22	2.0	22	100	0	88	18	18	45	18	1.86
49290--49341	20	2.6	20	87	0	77	26	21	26	25	1.99
49350--49403	20	2.7	20	97	0	99	25	18	24	31	1.97
49269--49406	61	2.3	61	84	0	186	24	17	23	34	1.96
49269--49424	61	2.6	61	81	2	152	23	19	23	33	1.97
54691--54748	23	2.6	23	94	5	102	39	3	12	44	1.58
57788--57828	8	5.2	8	82	5	57	34	0	29	36	1.58
57896--58646	126	5.8	126	93	5	1315	21	26	20	31	1.98
57896--58646	251	2.9	252	95	3	1315	21	26	20	31	1.98
58417--58457	16	2.6	16	96	0	73	0	41	43	14	1.45
58990--59089	34	3.0	33	83	2	128	39	2	4	55	1.30
59610--59703	21	4.5	21	92	5	129	20	26	35	18	1.95
59707--59754	21	2.3	21	85	0	60	22	12	39	25	1.89
61514--61578	34	1.9	33	84	3	85	63	6	0	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68557--68816	118	2.2	116	84	2	324	33	15	11	39	1.84
73833--73906	33	2.2	33	87	0	112	50	8	18	22	1.74
86257--86296	19	2.0	21	85	9	57	45	17	12	25	1.83

Tables:   1

The End!