Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002956.1 Hibiscus syriacus cultivar Beakdansim tig00006107_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86079

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
677--736
20
2.8
21
80
17
61
15
6
5
73
1.22
4843--5011
64
2.6
64
83
3
207
33
18
19
28
1.95
5361--5396
12
3.0
12
87
0
54
30
8
25
36
1.85
5416--5514
29
3.4
29
92
1
164
44
16
20
19
1.87
11765--11919
64
2.4
64
84
6
190
31
19
22
26
1.98
11887--11938
19
2.7
19
100
0
104
28
17
30
23
1.97
12312--12347
12
3.0
12
87
0
54
30
8
25
36
1.85
12369--12447
17
5.2
17
61
27
52
45
16
21
16
1.85
12367--12465
29
3.4
29
97
1
182
45
15
21
18
1.85
15214--16206
164
6.0
163
84
4
1154
31
23
19
25
1.98
15208--16121
329
2.8
329
88
2
1334
30
23
19
26
1.98
16764--17120
72
5.1
69
70
20
204
44
3
7
44
1.49
16792--17019
39
6.2
36
75
15
148
46
4
6
42
1.49
16886--17092
71
3.0
68
74
15
185
47
3
6
42
1.46
17133--17194
10
6.3
10
77
3
72
22
8
1
67
1.25
17124--17164
20
2.0
20
86
9
57
24
4
0
70
1.06
18280--18400
4
29.2
4
70
17
61
19
5
2
72
1.16
18277--18420
19
7.6
19
67
14
59
20
6
2
71
1.18
18280--18400
22
5.6
22
71
16
76
19
5
2
72
1.16
25741--25806
3
22.0
3
87
6
98
37
0
0
62
0.96
27918--27988
30
2.3
30
78
4
79
28
5
1
64
1.24
31269--31300
15
2.1
15
94
0
55
25
18
9
46
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38967--39029
16
3.7
17
79
12
67
31
7
6
53
1.55
40070--40250
92
2.0
92
92
2
301
27
13
23
34
1.93
40996--41637
113
5.7
113
93
1
1027
38
14
18
27
1.90
41974--42027
3
18.0
3
88
7
83
37
0
0
62
0.95
44932--44959
2
14.0
2
100
0
56
50
0
0
50
1.00
45150--45190
21
2.0
21
85
9
57
36
0
12
51
1.40
54856--54885
6
5.0
6
91
0
51
53
0
46
0
1.00
58293--58336
21
2.1
22
83
8
56
29
9
11
50
1.69
59891--59924
8
4.4
8
96
3
61
26
0
52
20
1.46
67462--67511
2
25.0
2
100
0
100
50
0
0
50
1.00
80044--80087
2
22.0
2
100
0
88
50
0
0
50
1.00

Tables:   1

The End!