Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002957.1 Hibiscus syriacus cultivar Beakdansim tig00006113_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68104
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:3557 original size:97 final size:96
Alignment explanation
Indices: 3434--3627 Score: 379
Period size: 97 Copynumber: 2.0 Consensus size: 96
3424 TTATTAAAAA
3434 TCTGTCTTTTATTTACTTCAGTTTGACTTAACCAATCTTGATATTGTTAACGGGTTGCTAAATAT
1 TCTGTCTTTTATTTACTTCAGTTTGACTTAACCAATCTTGATATTGTTAACGGGTTGCTAAATAT
3499 TTATTTTTCTTTCCTTCCAGAATTTCTGAATG
66 TTA-TTTTCTTTCCTTCCAGAATTTCTGAATG
3531 TCTGTCTTTTATTTACTTCAGTTTGACTTAACCAATCTTGATATTGTTAACGGGTTGCTAAATAT
1 TCTGTCTTTTATTTACTTCAGTTTGACTTAACCAATCTTGATATTGTTAACGGGTTGCTAAATAT
3596 TTATTTTCTTTCCTTCCAGAATTTCTGAATG
66 TTATTTTCTTTCCTTCCAGAATTTCTGAATG
3627 T
1 T
3628 AGATGATGAT
Statistics
Matches: 97, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
96 29 0.30
97 68 0.70
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.48
Consensus pattern (96 bp):
TCTGTCTTTTATTTACTTCAGTTTGACTTAACCAATCTTGATATTGTTAACGGGTTGCTAAATAT
TTATTTTCTTTCCTTCCAGAATTTCTGAATG
Found at i:11466 original size:24 final size:24
Alignment explanation
Indices: 11437--11486 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
11427 TGGTGGTTGA
*
11437 TTTAATGGT-TGTTTAAACTTTATT
1 TTTAATGGTATATTT-AACTTTATT
*
11461 TTTAATGGTATATTTAAGTTTATT
1 TTTAATGGTATATTTAACTTTATT
11485 TT
1 TT
11487 GGTTCTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.26, C:0.02, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTAATGGTATATTTAACTTTATT
Found at i:13105 original size:19 final size:20
Alignment explanation
Indices: 13083--13126 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
13073 GAGAAAAGGT
13083 AAAAGTTAA-AATGAAAGAG
1 AAAAGTTAATAATGAAAGAG
* *
13102 AAAAATTAATAATGAAAGAT
1 AAAAGTTAATAATGAAAGAG
13122 AAAAG
1 AAAAG
13127 AAAAAGTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (20 bp):
AAAAGTTAATAATGAAAGAG
Found at i:20005 original size:24 final size:24
Alignment explanation
Indices: 19961--20010 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
19951 ATAAAGAACC
*
19961 AAAATAAACTTAAATATACCATTA
1 AAAATAAACTTAAACATACCATTA
*
19985 AAAATAAAGTTTAAACA-ACCATTA
1 AAAATAAA-CTTAAACATACCATTA
20009 AA
1 AA
20011 TCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.60, C:0.12, G:0.02, T:0.26
Consensus pattern (24 bp):
AAAATAAACTTAAACATACCATTA
Found at i:23055 original size:31 final size:29
Alignment explanation
Indices: 22987--23105 Score: 73
Period size: 31 Copynumber: 3.9 Consensus size: 29
22977 AATATTATTT
*
22987 TTATAATTTTATTAATAAAAATATTAATAT
1 TTAT-ATTTTATTAATAAAAATATTAATAA
23017 TGGTATATTTTATTGAAATAAAAATATT-ATAAA
1 T--TATATTTTATT--AATAAAAATATTAAT-AA
* * * * *
23050 TTATATTAATTATTTATTAAAGTAATAGT-A
1 TTATATT--TTATTAATAAAAATATTAATAA
* *
23080 TTATATTATATT-TTAAAAATATTAAT
1 TTATATTTTATTAATAAAAATATTAAT
23106 CAGTATCTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 19
0.69 0.12 0.19
Matches are distributed among these distances:
27 9 0.13
28 4 0.06
30 9 0.13
31 22 0.32
32 6 0.09
33 19 0.28
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
TTATATTTTATTAATAAAAATATTAATAA
Found at i:23252 original size:8 final size:8
Alignment explanation
Indices: 23170--23284 Score: 53
Period size: 8 Copynumber: 14.1 Consensus size: 8
23160 AAATATATAA
23170 ATAATATT
1 ATAATATT
*
23178 ATTCATTATT
1 A-T-AATATT
23188 AATAAT-TT
1 -ATAATATT
23196 AATAATATT
1 -ATAATATT
23205 -TAATATCTT
1 ATAATA--TT
*
23214 ATATTATT
1 ATAATATT
23222 ATAATA-T
1 ATAATATT
*
23229 A-ATTGATT
1 ATAAT-ATT
**
23237 ATTTTATT
1 ATAATATT
23245 ATAATATT
1 ATAATATT
*
23253 A-AA-AAT
1 ATAATATT
23259 ATAATATT
1 ATAATATT
*
23267 ATATTATT
1 ATAATATT
23275 ATAAATATT
1 AT-AATATT
23284 A
1 A
23285 ATAAAATATA
Statistics
Matches: 82, Mismatches: 12, Indels: 25
0.69 0.10 0.21
Matches are distributed among these distances:
6 5 0.06
7 12 0.15
8 39 0.48
9 15 0.18
10 10 0.12
11 1 0.01
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (8 bp):
ATAATATT
Found at i:23269 original size:22 final size:23
Alignment explanation
Indices: 23241--23287 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
23231 TTGATTATTT
23241 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
23263 TATTATATTATTATAAATATTAA
1 TATTATAATATTAAAAATATTAA
23286 TA
1 TA
23288 AAATATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:23274 original size:30 final size:35
Alignment explanation
Indices: 23214--23294 Score: 100
Period size: 30 Copynumber: 2.5 Consensus size: 35
23204 TTAATATCTT
* * *
23214 ATATTATTATAATATAATTGATTATTTTATTAT-A
1 ATATTAATAAAATATAATTGATTATATTATTATAA
23248 ATATT-A-AAAATATAA-T-ATTATATTATTATAA
1 ATATTAATAAAATATAATTGATTATATTATTATAA
23279 ATATTAATAAAATATA
1 ATATTAATAAAATATA
23295 TTTTAAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
30 12 0.29
31 7 0.17
32 9 0.22
33 8 0.20
34 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (35 bp):
ATATTAATAAAATATAATTGATTATATTATTATAA
Found at i:23296 original size:22 final size:22
Alignment explanation
Indices: 23248--23305 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
23238 TTTTATTATA
* **
23248 ATATTAAAAATA-TAATATTAT
1 ATATTATAAATATTAATAAAAT
23269 ATTATTATAAATATTAATAAAAT
1 A-TATTATAAATATTAATAAAAT
*
23292 ATATTTTAAATATT
1 ATATTATAAATATT
23306 TTAATAATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 1 0.03
22 22 0.71
23 8 0.26
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTATAAATATTAATAAAAT
Found at i:23578 original size:42 final size:41
Alignment explanation
Indices: 23519--23608 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
23509 TTATTTCAAC
*
23519 CAAACACTGAAATACATTTTCCGAAAAGCGAATTACGTGAAA
1 CAAACACAGAAATACATTTT-CGAAAAGCGAATTACGTGAAA
*
23561 CAAACACAAGAAA-ACATTTTCGGAAAGCGAATTACGTGAAA
1 CAAACAC-AGAAATACATTTTCGAAAAGCGAATTACGTGAAA
23602 CAAACAC
1 CAAACAC
23609 GAGATTTTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 27 0.60
42 14 0.31
43 4 0.09
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (41 bp):
CAAACACAGAAATACATTTTCGAAAAGCGAATTACGTGAAA
Found at i:30122 original size:18 final size:18
Alignment explanation
Indices: 30096--30130 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
30086 TCGAAAGGAC
*
30096 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
30114 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
30131 CCAGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:33585 original size:8 final size:8
Alignment explanation
Indices: 33563--33617 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
33553 GAACTTTCTT
33563 TAATATTA
1 TAATATTA
**
33571 TTTTATTA
1 TAATATTA
33579 TAATATTA
1 TAATATTA
*
33587 -AA-AATA
1 TAATATTA
33593 TAATATTA
1 TAATATTA
*
33601 TATTATTA
1 TAATATTA
33609 TAAATATTA
1 T-AATATTA
33618 ATAAATATAT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
6 3 0.08
7 4 0.11
8 23 0.64
9 6 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (8 bp):
TAATATTA
Found at i:33599 original size:22 final size:23
Alignment explanation
Indices: 33574--33620 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
33564 AATATTATTT
33574 TATTATAATATTAAAAATA-TAA
1 TATTATAATATTAAAAATATTAA
* *
33596 TATTATATTATTATAAATATTAA
1 TATTATAATATTAAAAATATTAA
33619 TA
1 TA
33621 AATATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 17 0.77
23 5 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTATAATATTAAAAATATTAA
Found at i:33599 original size:30 final size:32
Alignment explanation
Indices: 33563--33626 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 32
33553 GAACTTTCTT
*
33563 TAATATTATTTTATTAT-AATATTAA-AAATA
1 TAATATTATATTATTATAAATATTAATAAATA
33593 TAATATTATATTATTATAAATATTAATAAATA
1 TAATATTATATTATTATAAATATTAATAAATA
33625 TA
1 TA
33627 TTTTAAATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 16 0.52
31 8 0.26
32 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
TAATATTATATTATTATAAATATTAATAAATA
Found at i:33625 original size:22 final size:22
Alignment explanation
Indices: 33581--33637 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
33571 TTTTATTATA
* *
33581 ATATTAAAAATA-TAATATTAT
1 ATATTATAAATATTAATATAAT
33602 ATTATTATAAATATTAATA-AAT
1 A-TATTATAAATATTAATATAAT
*
33624 ATATTTTAAATATT
1 ATATTATAAATATT
33638 TTAATAATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 13 0.42
22 13 0.42
23 5 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATATTATAAATATTAATATAAT
Found at i:33910 original size:42 final size:41
Alignment explanation
Indices: 33851--33940 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
33841 TTATTTCAAC
*
33851 CAAACACTGAAATACATTTTCCGAAAAGCGAATTACGTGAAA
1 CAAACACAGAAATACATTTT-CGAAAAGCGAATTACGTGAAA
*
33893 CAAACACAAGAAA-ACATTTTCGGAAAGCGAATTACGTGAAA
1 CAAACAC-AGAAATACATTTTCGAAAAGCGAATTACGTGAAA
33934 CAAACAC
1 CAAACAC
33941 GAGATTTTGG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
41 27 0.60
42 14 0.31
43 4 0.09
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (41 bp):
CAAACACAGAAATACATTTTCGAAAAGCGAATTACGTGAAA
Found at i:40453 original size:18 final size:18
Alignment explanation
Indices: 40427--40461 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
40417 TCGAAAGGAC
*
40427 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
40445 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
40462 CCAGATGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:45422 original size:2 final size:2
Alignment explanation
Indices: 45415--45462 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
45405 AACCGTTCAC
45415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45457 AT AT AT
1 AT AT AT
45463 GAATTTTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:49600 original size:106 final size:106
Alignment explanation
Indices: 48964--50465 Score: 2333
Period size: 106 Copynumber: 14.4 Consensus size: 106
48954 CATTGTTCCA
* * * ** *
48964 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* * * *
49029 CAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * ** * *
49070 AGTCCAACATCATTCGTTGTGAAGTTGAAATTGATTCTG-AA-T--GAA-AT-TTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
49129 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
49170 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
49234 CAGCGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
49275 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
49339 CAGCGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* **
49380 AGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA--AATTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* *
49443 CAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
49484 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
49549 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
49590 AGTCCAATATCCTCCGTTGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
49655 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
** * *
49696 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGATTCTG-AA-T--GAA-AT-TTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
49755 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* *
49796 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTG-TTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
49860 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * **
49901 AGTCCAATACCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAA--AATTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* *
49964 CAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
50005 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
50070 CAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
50111 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAA-TGAGAAGTTGATTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
50175 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
50216 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGGTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
50281 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
50322 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGGTTATTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
50387 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
50428 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
50466 AAAGGCTGTA
Statistics
Matches: 1305, Mismatches: 72, Indels: 38
0.92 0.05 0.03
Matches are distributed among these distances:
100 171 0.13
101 4 0.00
102 8 0.01
104 197 0.15
105 408 0.31
106 517 0.40
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (106 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:49944 original size:521 final size:521
Alignment explanation
Indices: 48964--50465 Score: 2514
Period size: 521 Copynumber: 2.9 Consensus size: 521
48954 CATTGTTCCA
* * * ** * *
48964 AGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAA
1 AGTCCAATATCCTTCGAT-GTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
* * * * * *
49028 CCAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAACATCATTCGTTGTGAA
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAA
** * * *
49093 GTTGAAATTGATTCTG-AAT-GAA-AT-TTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTG
130 GTTGAAATTGGCTCTGAAATGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
49154 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAA
195 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA-ATT--GAA
* *
49219 GTTGTTGTTGACAAGCAGCGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
257 ATTGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATA
* *
49284 TCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAAGCAGCGGTCCC
322 TCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAGCAGCGGTCCC
*
49349 TTTGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGG
387 TTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGG
49414 CTCTGAAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTG
452 CTCTGAAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTG
49479 TCTGG
517 TCTGG
49484 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
*
49549 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTCCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
49614 TCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAA-T-GGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
**
49679 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGATTCTGAA-TGAAAT
194 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTGAAAT
49743 T-TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
259 TGTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATC
*
49807 CTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGTTGTTGACAAGCAGCGGTCCCTT
324 CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAGCAGCGGTCCCTT
*
49872 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTTCGCTGTGAAGTTGAAATTGGCT
389 CGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCT
49937 CTGAAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTC
454 CTGAAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTC
50002 TGG
519 TGG
50005 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
*
50070 CAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
*
50135 TTGAAATTGGCTCTGAAATGAGAAGTTGATTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
131 TTGAAATTGGCTCTGAAATG-GAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTG
50200 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAA
195 AACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG-AATTGA-AA
* *
50265 GTTGGTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
258 -TT-GTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAAT
* * *
50330 ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGGTTATTGACAACCAGCGGTC
321 ATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTT-GTTGTTGACAAGCAGCGGTC
*
50395 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT
385 CCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
50460 GGCTCT
450 GGCTCT
50466 AAAGGCTGTA
Statistics
Matches: 924, Mismatches: 43, Indels: 23
0.93 0.04 0.02
Matches are distributed among these distances:
519 1 0.00
520 223 0.24
521 405 0.44
522 9 0.01
523 2 0.00
524 6 0.01
525 2 0.00
526 189 0.20
527 87 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (521 bp):
AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
TTGAAATTGGCTCTGAAATGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGA
ACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAATTGAAATTG
TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCT
TCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTGTTGACAAGCAGCGGTCCCTTCG
TCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT
GAAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTG
G
Found at i:50162 original size:626 final size:626
Alignment explanation
Indices: 48964--50465 Score: 2567
Period size: 626 Copynumber: 2.4 Consensus size: 626
48954 CATTGTTCCA
* * ** * *
48964 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
* * * * * *
49029 CAGCTGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAACATCATTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
49094 TTGAAATTGATTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
131 TTGAAATTGATTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
49159 GCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGT
196 GCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGT
* *
49224 TGTTGACAAGCAGCGGTCCCTTTGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTT
261 TGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTT
* * *
49289 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTGTTGACAAGCAGCGGTCCCTTTGT
326 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATGTTGTTGACAACCAGCGGTCCCTTCGT
* * * *
49354 CGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTG
391 CGTGAAGTTGAACATACGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTG
* *
49419 AAATTGGGAAAATTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACATACGTTGTCTGG
456 AAATTGGGAAAATTTATTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACATACGTTGTCTGG
* *
49484 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
521 AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGAGAAGTTGATTATTGACAAC
49549 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
586 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
*
49590 AGTCCAATATCCTCCGTTGTGAAGTCGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
1 AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
49655 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
49720 TTGAAATTGATTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
131 TTGAAATTGATTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
49785 GCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGT
196 GCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGT
49850 TGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTT
261 TGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTT
49915 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAAT-TTGTTGACAACCAGCGGTCCCTTCGT
326 CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATGTTGTTGACAACCAGCGGTCCCTTCGT
49979 CGTGAAGTTGAACATACGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTG
391 CGTGAAGTTGAACATACGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTG
** * *
50044 AAATTGGGAAGTTGTTTATTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACTTGCGTTGTCT
456 AAATTGGGAA--AATTTATTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACATACGTTGTCT
* *
50109 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAA-TGAGAAGTTGATTATTGACA
519 GGAGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGAGAAGTTGATTATTGACA
50173 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
584 ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
* * *
50216 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGGTTATTGACAAC
1 AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
50281 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
** * *
50346 TTGAAATTGGCTCTGAAATTGAGAAGTTGGTTATTGACAACCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGATTCTG-AA-TGA-AA-TT--TTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTT
50411 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
190 GAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCT
50466 AAAGGCTGTA
Statistics
Matches: 828, Mismatches: 40, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
625 95 0.11
626 547 0.66
627 91 0.11
628 3 0.00
629 2 0.00
630 2 0.00
632 88 0.11
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (626 bp):
AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAG
TTGAAATTGATTCTGAATGAAATTTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTT
GCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTTGT
TGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATACCCTT
CGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAAATGTTGTTGACAACCAGCGGTCCCTTCGT
CGTGAAGTTGAACATACGTTGTCTGGAGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTG
AAATTGGGAAAATTTATTGACAACCAGCGGTCCCTTCATCGTGAAGTTGAACATACGTTGTCTGG
AGTCCAATATCCTTCGATGTGAAGTCGAAATTGGCTCTGAAATTGAGAAGTTGATTATTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGG
Found at i:52269 original size:26 final size:25
Alignment explanation
Indices: 52215--52271 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
52205 GAGACATGTG
*
52215 AATGCAATGAAAAAAAAGGAATCAT
1 AATGCAATGAAAAAAAAGGAATCAA
* *
52240 AATGCGAATGTAAAGAAAAGTAA-CAA
1 AATGC-AATG-AAAAAAAAGGAATCAA
52266 AATGCA
1 AATGCA
52272 CAACATGTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.22
26 11 0.41
27 10 0.37
ACGTcount: A:0.58, C:0.09, G:0.18, T:0.16
Consensus pattern (25 bp):
AATGCAATGAAAAAAAAGGAATCAA
Found at i:66051 original size:55 final size:55
Alignment explanation
Indices: 65996--66616 Score: 620
Period size: 51 Copynumber: 11.6 Consensus size: 55
65986 TGACGGGTCT
* *
65996 GCTCCCTATTCTTTCATG-GAGTATAAGACTCGAACAATCTTCAGTAAACGTGTCT
1 GCTCCCTATTCTTTCA-GAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* * ** * *
66051 GCTCCCTATTCATTCAGGGAGTATAAGACTCGAGTAATCTTCACTAAACGTGTCT
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* * * *
66106 GCTCCCTATTCGTTCAG-GAGTATAAGACTCGAATAATCTTCAGTAAACGTGTCT
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* * * *
66160 GCTCCCTATTCGTTCAGGGAGTATAAGACTCGAACAATCTTCATAAAAACGGGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCA-ATAAACGTGTCC
* * *
66216 GCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAACAATCTTCAATAAACGGGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAG-ACTCGAACAATCTTCAATAAACGTGTCC
* * * *
66271 GCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAAAAATCTTCAATAAAACGGGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAG-ACTCGAACAATCTTCAAT-AAACGTGTCC
* * *
66327 GCTCTCTATTCCTTCAGAGAGTAT-AGAACTCGAAAAATCTTCAATAAACAG-GTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAG-ACTCGAACAATCTTCAATAAAC-GTGTCC
* * ** *
66382 GCTCCCTATTCATTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* * ** *
66433 GCTCCCTATTCTTTCAGAGAGTACAGGACT----CAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* ** *
66484 GCTCCCTATTCTTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
* ** *
66535 GCTCCCTATTCTTTCAGAGAGTATAGGACT----CAATCTTCAACGAACTTGTCC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
*
66586 GCTCCCTATTCTTTCAGAGAGTATAGGACTC
1 GCTCCCTATTCTTTCAGAGAGTATAAGACTC
66617 AATCTTCAAC
Statistics
Matches: 530, Mismatches: 27, Indels: 21
0.92 0.05 0.04
Matches are distributed among these distances:
51 196 0.37
54 53 0.10
55 179 0.34
56 102 0.19
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (55 bp):
GCTCCCTATTCTTTCAGAGAGTATAAGACTCGAACAATCTTCAATAAACGTGTCC
Found at i:67969 original size:22 final size:22
Alignment explanation
Indices: 67933--67988 Score: 62
Period size: 24 Copynumber: 2.5 Consensus size: 22
67923 CCTCCTTTTA
*
67933 TTCTCTTTTTT-CA-TTTTCTC
1 TTCTTTTTTTTCCATTTTTCTC
*
67953 TTTTTATTTTTTCCATTTTTTCTC
1 TTCTT-TTTTTTCCA-TTTTTCTC
67977 TTCTTTTTTTTC
1 TTCTTTTTTTTC
67989 TTTTTTTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 3 0.10
21 6 0.21
22 2 0.07
23 7 0.24
24 11 0.38
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (22 bp):
TTCTTTTTTTTCCATTTTTCTC
Done.