Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002959.1 Hibiscus syriacus cultivar Beakdansim tig00006115_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74240

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7332--7369
17
2.1
19
85
9
53
52
18
10
18
1.73
13868--13937
36
1.9
36
100
0
140
50
21
8
20
1.74
13870--13946
36
2.1
36
92
0
127
50
19
11
18
1.77
15734--15813
23
3.5
23
76
13
76
53
1
2
42
1.22
15734--15797
22
2.9
22
75
15
60
53
0
1
45
1.10
16016--16131
42
2.7
43
85
7
157
46
0
0
51
1.12
17286--17436
74
2.0
74
92
0
248
39
11
18
30
1.86
20668--21516
451
1.9
450
88
1
1297
27
21
24
25
1.99
23930--23996
28
2.4
28
100
0
134
31
14
19
34
1.92
39348--39488
70
2.0
70
98
0
273
34
24
17
24
1.96
41547--41588
21
2.0
21
100
0
84
23
4
38
33
1.76
41549--41596
21
2.3
21
92
0
78
27
8
31
33
1.86
45948--45976
2
14.5
2
100
0
58
48
0
0
51
1.00
52151--52412
35
7.2
39
75
16
135
43
4
7
44
1.52
52141--52432
107
2.7
107
79
12
287
43
4
7
44
1.54
52292--52412
40
3.2
40
80
13
134
46
4
6
42
1.51
52471--52502
17
1.9
16
93
6
55
40
3
0
56
1.15
53727--53777
19
2.8
18
76
21
52
17
3
1
76
1.03
53692--53823
57
2.4
55
81
7
133
16
7
3
71
1.23
57923--58091
64
2.6
64
83
3
207
33
18
19
28
1.95
58438--58473
12
3.0
12
87
0
54
30
8
25
36
1.85
58493--58590
28
3.4
29
90
4
155
44
16
20
18
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64826--64980
64
2.4
64
84
6
190
31
19
22
26
1.98
64948--64999
19
2.7
19
100
0
104
28
17
30
23
1.97
65373--65408
12
3.0
12
87
0
54
30
8
25
36
1.85
65430--65508
17
5.2
17
61
27
52
45
16
21
16
1.85
65428--65525
29
3.4
29
95
2
173
44
15
21
18
1.86
68252--69158
327
2.8
326
87
3
1272
30
23
19
26
1.98
68258--69243
165
6.0
162
82
6
1112
31
23
19
25
1.98
69808--70138
35
9.5
33
69
20
146
45
4
7
43
1.51
69983--70092
33
3.2
35
79
11
111
48
4
7
40
1.51
69956--70047
36
2.6
35
81
13
107
50
3
7
39
1.47
70157--70201
10
4.5
10
85
0
63
20
8
2
68
1.27
70146--70193
20
2.3
21
89
7
71
22
6
0
70
1.09
71315--71358
23
1.9
23
86
9
63
11
11
0
77
1.00
71322--71403
44
1.9
45
82
9
109
18
6
2
73
1.15

Tables:   1

The End!