Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000296.1 Hibiscus syriacus cultivar Beakdansim tig00000545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 216456
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:7727 original size:12 final size:13
Alignment explanation
Indices: 7710--7750 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
7700 TCCTTTTTCC
7710 ATTATATA-TTAT
1 ATTATATATTTAT
7722 ATTATATTATTTAT
1 ATTATA-TATTTAT
7736 ATT-TATATTTAT
1 ATTATATATTTAT
7748 ATT
1 ATT
7751 CTTTTATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 16 0.59
13 4 0.15
14 7 0.26
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTATATATTTAT
Found at i:7737 original size:21 final size:21
Alignment explanation
Indices: 7711--7750 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7701 CCTTTTTCCA
7711 TTATATATTATA-TTATATTAT
1 TTATAT-TTATATTTATATTAT
7732 TTATATTTATATTTATATT
1 TTATATTTATATTTATATT
7751 CTTTTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATATTTATATTTATATTAT
Found at i:7740 original size:6 final size:6
Alignment explanation
Indices: 7711--7750 Score: 53
Period size: 6 Copynumber: 6.2 Consensus size: 6
7701 CCTTTTTCCA
7711 TTATAT ATTATAT TATATTAT TTATAT TTATAT TTATAT T
1 TTATAT -TTATAT T-TA-TAT TTATAT TTATAT TTATAT T
7751 CTTTTATGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 17 0.55
7 10 0.32
8 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (6 bp):
TTATAT
Found at i:8268 original size:32 final size:32
Alignment explanation
Indices: 8232--8298 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
8222 GTACACATCG
* * * *
8232 TCTTTAATCTCTTACATAACACACTTCTTTCA
1 TCTTTAATATCTTACACAACAAACTCCTTTCA
8264 TCTTTAATATCTTACACAACAAACTCCTTTCA
1 TCTTTAATATCTTACACAACAAACTCCTTTCA
8296 TCT
1 TCT
8299 AACCAAAAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (32 bp):
TCTTTAATATCTTACACAACAAACTCCTTTCA
Found at i:9425 original size:21 final size:21
Alignment explanation
Indices: 9384--9425 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
9374 TTAGGGATTT
9384 TTTATTTCAAATTAATTAAATA
1 TTTATTT-AAATTAATTAAATA
9406 TTTATTT-AATTAATTTAAAT
1 TTTATTTAAATTAA-TTAAAT
9426 TAAATATTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.32
21 6 0.32
22 7 0.37
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTATTTAAATTAATTAAATA
Found at i:18364 original size:13 final size:15
Alignment explanation
Indices: 18331--18361 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
18321 TTGATTAGAC
18331 TAATATAACTCTTTT
1 TAATATAACTCTTTT
18346 TAATATAACT-TTTT
1 TAATATAACTCTTTT
18360 TA
1 TA
18362 TATTTATGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (15 bp):
TAATATAACTCTTTT
Found at i:21107 original size:14 final size:14
Alignment explanation
Indices: 21069--21117 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
21059 TACGTTTCTG
*
21069 TTTATATGCAGAGA
1 TTTATTTGCAGAGA
*
21083 TTT-TTACGCAGAGA
1 TTTATT-TGCAGAGA
*
21097 TTTATTTGCAGGGA
1 TTTATTTGCAGAGA
21111 TTTATTT
1 TTTATTT
21118 ATATATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 1 0.03
14 26 0.90
15 2 0.07
ACGTcount: A:0.27, C:0.08, G:0.20, T:0.45
Consensus pattern (14 bp):
TTTATTTGCAGAGA
Found at i:23857 original size:31 final size:32
Alignment explanation
Indices: 23810--23881 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
23800 ATTTGGATCG
*
23810 GATTTTTTTTAAAAAAAATCGGGATCGGGTCA
1 GATTTTTTTTAAAAAAAATCGGGATCAGGTCA
* * * *
23842 GATTTTTTTT-TAAAAATTCGGGTTCAGGTCG
1 GATTTTTTTTAAAAAAAATCGGGATCAGGTCA
*
23873 GGTTTTTTT
1 GATTTTTTT
23882 AAGTTTGATA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
31 24 0.71
32 10 0.29
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.44
Consensus pattern (32 bp):
GATTTTTTTTAAAAAAAATCGGGATCAGGTCA
Found at i:23905 original size:33 final size:34
Alignment explanation
Indices: 23857--23926 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 34
23847 TTTTTTAAAA
* *
23857 ATTCGGGTTCAGGTCGGGTTTTTTTAAGTTTGAT
1 ATTCGGGTTCAGGTCGGATTTTTTTAAGTGTGAT
*
23891 ATTCGGG-TCGGGTCGGATTTTTTTAAGTGTGAT
1 ATTCGGGTTCAGGTCGGATTTTTTTAAGTGTGAT
23924 ATT
1 ATT
23927 ACCATGCTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 26 0.79
34 7 0.21
ACGTcount: A:0.16, C:0.09, G:0.30, T:0.46
Consensus pattern (34 bp):
ATTCGGGTTCAGGTCGGATTTTTTTAAGTGTGAT
Found at i:24626 original size:2 final size:2
Alignment explanation
Indices: 24621--24646 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24611 ATTTTTTAGA
24621 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
24647 TAATATTCCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28481 original size:11 final size:11
Alignment explanation
Indices: 28467--28557 Score: 51
Period size: 11 Copynumber: 8.0 Consensus size: 11
28457 AAAAAAACAT
28467 TATATATATAA
1 TATATATATAA
* *
28478 TATAAATTTATA
1 TATATATATA-A
*
28490 TATAGTGTATATA
1 TATA-TATATA-A
* *
28503 TATATAAATTA
1 TATATATATAA
* *
28514 TATTTATATTA
1 TATATATATAA
*
28525 TAAATATATAA
1 TATATATATAA
28536 T-TAT-TATAA
1 TATATATATAA
28545 GCTATATATATAA
1 --TATATATATAA
28558 ACTATGTTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
9 5 0.08
10 2 0.03
11 28 0.47
12 11 0.18
13 14 0.23
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.47
Consensus pattern (11 bp):
TATATATATAA
Found at i:28491 original size:17 final size:17
Alignment explanation
Indices: 28469--28537 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
28459 AAAAACATTA
28469 TATATATAATATAAATT
1 TATATATAATATAAATT
* * * *
28486 TATATATAGTGTATATA
1 TATATATAATATAAATT
*
28503 TATATA-AAT-TATATT
1 TATATATAATATAAATT
28518 TATATTATAAATATATAATT
1 TATA-TAT-AATATA-AATT
28538 ATTATAAGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
15 9 0.22
16 4 0.10
17 19 0.47
18 3 0.08
19 2 0.05
20 3 0.08
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
TATATATAATATAAATT
Found at i:28500 original size:26 final size:25
Alignment explanation
Indices: 28467--28543 Score: 81
Period size: 26 Copynumber: 3.1 Consensus size: 25
28457 AAAAAAACAT
28467 TATA-TATATAATATAAATT-TATA
1 TATATTATATAATATAAATTATATA
*
28490 TATAGTGTATATATATATAAATTATATT
1 TATA-T-TATATA-ATATAAATTATATA
28518 TATATTATA-AATATATAATTAT-TA
1 TATATTATATAATATA-AATTATATA
28542 TA
1 TA
28544 AGCTATATAT
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.09
24 8 0.17
25 7 0.15
26 10 0.22
27 10 0.22
28 7 0.15
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (25 bp):
TATATTATATAATATAAATTATATA
Found at i:28533 original size:32 final size:32
Alignment explanation
Indices: 28467--28534 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 32
28457 AAAAAAACAT
**
28467 TATATATATAATATAAATTTATATATAGTGTA
1 TATATATATAATATAAATTTATATATAGAATA
*
28499 TATATATATAA-ATTATATTTATATTATA-AATA
1 TATATATATAATA-TAAATTTATA-TATAGAATA
28531 TATA
1 TATA
28535 ATTATTATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
31 1 0.03
32 26 0.84
33 4 0.13
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (32 bp):
TATATATATAATATAAATTTATATATAGAATA
Found at i:28554 original size:2 final size:2
Alignment explanation
Indices: 28467--28534 Score: 52
Period size: 2 Copynumber: 35.0 Consensus size: 2
28457 AAAAAAACAT
* * *
28467 TA TA TA TA TA -A TA TA AA TT TA TA TA TA GTG TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * *
28509 AA T- TA TA TT TA TA T- TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28535 ATTATTATAA
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
1 3 0.06
2 46 0.92
3 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:29120 original size:12 final size:12
Alignment explanation
Indices: 29105--29165 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
29095 ATGTAGAAAT
*
29105 TTATGTATATAC
1 TTATATATATAC
29117 TTATATATATA-
1 TTATATATATAC
29128 -TATATATATA-
1 TTATATATATAC
29138 TATATATATATA-
1 T-TATATATATAC
29150 TATATATATATA-
1 T-TATATATATAC
29162 TTAT
1 TTAT
29166 TCAAAGTGAG
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
10 10 0.22
11 3 0.07
12 33 0.72
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (12 bp):
TTATATATATAC
Found at i:29123 original size:2 final size:2
Alignment explanation
Indices: 29118--29162 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
29108 TGTATATACT
29118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
29160 TA T
1 TA T
29163 TATTCAAAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29265 original size:19 final size:19
Alignment explanation
Indices: 29241--29277 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
29231 TTTTATTTGG
29241 GAATTTAGAAGGAAATTGA
1 GAATTTAGAAGGAAATTGA
*
29260 GAATTTAGAGGGAAATTG
1 GAATTTAGAAGGAAATTG
29278 GAAAATGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (19 bp):
GAATTTAGAAGGAAATTGA
Found at i:29290 original size:20 final size:19
Alignment explanation
Indices: 29246--29293 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
29236 TTTGGGAATT
* * *
29246 TAGAAGGAAATTGAGAATT
1 TAGAGGGAAATTGAAAATG
29265 TAGAGGGAAATTGGAAAATG
1 TAGAGGGAAATT-GAAAATG
29285 TAGAGGGAA
1 TAGAGGGAA
29294 TAGAAAAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.46, C:0.00, G:0.33, T:0.21
Consensus pattern (19 bp):
TAGAGGGAAATTGAAAATG
Found at i:29509 original size:2 final size:2
Alignment explanation
Indices: 29502--29613 Score: 90
Period size: 2 Copynumber: 56.5 Consensus size: 2
29492 TACTTTTAAT
*
29502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
29544 CTA TA TA TG TA TA AA CTA TA TA -A AA TA TA TA GTT TA TA AA T-
1 -TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA
*
29585 TA TA -A TT TA TA T- TA -A TA TA GTA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA T
29614 GTATGTATAA
Statistics
Matches: 88, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
1 5 0.06
2 78 0.89
3 5 0.06
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (2 bp):
TA
Found at i:29850 original size:16 final size:15
Alignment explanation
Indices: 29835--29877 Score: 68
Period size: 16 Copynumber: 2.8 Consensus size: 15
29825 ACCATGTATA
29835 ATATATATAAACTAT
1 ATATATATAAACTAT
*
29850 ATATATATATACCTAT
1 ATATATATA-AACTAT
29866 ATATATATAAAC
1 ATATATATAAAC
29878 ATTATAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATATATAAACTAT
Found at i:29995 original size:14 final size:14
Alignment explanation
Indices: 29978--30022 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
29968 CCCTAAAATT
*
29978 TAAATCATAAACAC
1 TAAATCATAAACCC
29992 TAAA-CACTAAACCC
1 TAAATCA-TAAACCC
30006 TAAATCATAAACCC
1 TAAATCATAAACCC
30020 TAA
1 TAA
30023 TATAAATGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 2 0.07
14 24 0.86
15 2 0.07
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAATCATAAACCC
Found at i:29995 original size:28 final size:28
Alignment explanation
Indices: 29963--30022 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
29953 TATAGAAATC
* **
29963 CTAAACCCTAAAATTTAAATCATAAACA
1 CTAAACACTAAAACCTAAATCATAAACA
* *
29991 CTAAACACTAAACCCTAAATCATAAACC
1 CTAAACACTAAAACCTAAATCATAAACA
30019 CTAA
1 CTAA
30023 TATAAATGGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.22
Consensus pattern (28 bp):
CTAAACACTAAAACCTAAATCATAAACA
Found at i:30296 original size:23 final size:25
Alignment explanation
Indices: 30240--30296 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 25
30230 TTAATCATGT
*
30240 TTTATATAATTTACATTTAAATAAT
1 TTTATATAATTTACATTTAAATAAA
*
30265 TTTAT-TAATTT-TA-TTAAATAAA
1 TTTATATAATTTACATTTAAATAAA
30287 TTTATATAAT
1 TTTATATAAT
30297 ATGTATGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 13 0.45
23 5 0.17
24 6 0.21
25 5 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATATAATTTACATTTAAATAAA
Found at i:30914 original size:17 final size:17
Alignment explanation
Indices: 30888--30928 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
30878 ATAAACCATG
30888 TATA-ATATATATAAAC
1 TATATATATATATAAAC
* *
30904 TATATATATATATATAT
1 TATATATATATATAAAC
30921 TATATATA
1 TATATATA
30929 AACTATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TATATATATATATAAAC
Found at i:30937 original size:2 final size:2
Alignment explanation
Indices: 30888--30928 Score: 50
Period size: 2 Copynumber: 21.0 Consensus size: 2
30878 ATAAACCATG
*
30888 TA TA -A TA TA TA TA AA CTA TA TA TA TA TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
30929 AACTATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 2 0.06
2 31 0.91
3 1 0.03
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:30952 original size:28 final size:28
Alignment explanation
Indices: 30891--30954 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
30881 AACCATGTAT
* *
30891 AATATATATAAACTATATATATATATAT
1 AATATATATAAACTATATAAATATATAA
*
30919 ATTATATATAAACTATATAAAGTA-ATAA
1 AATATATATAAACTATATAAA-TATATAA
30947 AATATATA
1 AATATATA
30955 GTTTATAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 29 0.94
29 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (28 bp):
AATATATATAAACTATATAAATATATAA
Found at i:31028 original size:21 final size:20
Alignment explanation
Indices: 30963--31029 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
30953 TAGTTTATAG
*
30963 AAACCTTAACCCCTAAATCAT
1 AAACCTTAAACCCTAAATC-T
* *
30984 AAACCTTAAACCTTAAAATTT
1 AAACCTTAAACCCT-AAATCT
*
31005 AAACCCTAAACCCTAAACTCT
1 AAACCTTAAACCCTAAA-TCT
31026 AAAC
1 AAAC
31030 TATAAATCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
20 3 0.08
21 31 0.82
22 4 0.11
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (20 bp):
AAACCTTAAACCCTAAATCT
Found at i:31338 original size:523 final size:518
Alignment explanation
Indices: 30405--33012 Score: 2199
Period size: 523 Copynumber: 5.0 Consensus size: 518
30395 AATACTATGC
*
30405 ATAAACTATATAAAGTAATAAACTATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACCCT
1 ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACCCT
* * * * * *
30470 AAACTTTAAACCATAAATACTAAACACGGAACCATAAACCATAAGCCCTAATATAAATAGACTAG
66 AAACCTTAAAACATAAACACTAAACACGAAACCATAAACCATAAACCCTAATATAAATAGACTAA
* * * *
30535 CATTAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAATTGATGT
131 CATAAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATATAAACTAATGT
*
30600 AAATGAACTAGCACTAATGCAAATAGACTTATTTTTTGGTGTTATTATTACTTATTCATAACAAT
196 AAATGAACTAGCACTAATGCAAATAGACTTATTTTTGGGTGTTATTATTACTTATTCATAACAAT
*
30665 AAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGA
261 AAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATACTAATTATGCAAATGA
*
30730 AATTAATATGACATGTACTACTATTATGAACCATATAATATGCAATGTGACATATTAATTATTTA
326 AATTAATATGACATGTACTACTATTATGAACCATATAATATGCAATGTGACATACTAATTATTTA
*
30795 ACACCCAATTAATCATGTTTTATCTAATTTACATTTAAATAATTTTATTAATTTTATTAAATAAT
391 ACACCCAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAAATAAT
30860 TTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATATATATATATATTATA
456 TTTATAT-AT-T-TATGTATAAACCATGTATAATATATATAAACTATATATATATATATATTATA
30925 T
518 T
* *
30926 ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCTTAACCCCTAAATCATAAACCTT
1 ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACCCT
** * * * * * * *
30991 AAACCTTAAAATTTAAACCCTAAACCCTAAACTC-TAAACTATAAATCCTAATGTAAATGGACTA
66 AAACCTTAAAACATAAACACTAAACACGAAAC-CATAAACCATAAACCCTAATATAAATAGACTA
* *
31055 ACACTAATATATATATATATTTGTAATAAAAGAGTGGGCTTGTGTATTGGGCCTATATAAACTAA
130 ACA-TAA-ATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATATAAACTAA
* * * *
31120 TGTAAATGGATTAGCACTAATGC-AATATACTTATTTTTGGGTTTTTATTATTACTTATTCATAA
193 TGTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTGGG-TGTTATTATTACTTATTCATAA
* *
31184 CAA-CAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATATTAATTATGCAA
257 CAATAAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATACTAATTATGCAA
* *
31248 ATGAAATTAATATGACATGTACTACTATTTATGAATCATATAATATGCAATGTGGCATACTAATT
322 ATGAAATTAATATGACATGTACTACTA-TTATGAACCATATAATATGCAATGTGACATACTAATT
*
31313 ATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAA
386 ATTTAACACCCAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAA
* * * * * *
31378 ATAATTTTATATATTTATGTATAAACCATGTATAATATATTTAAACTATACACACACACACACAC
451 ATAATTTTATATATTTATGTATAAACCATGTATAATATATATAAACTAT------ATATATATAT
* ** * *
31443 ACACACACAC
510 ATA-TTATAT
* * ****
31453 ACACACACATATAATATATA-TATATAAACAAACTATATAAAGTAAATTACTTATATAGTTTATA
1 ATA-A-AC-TAT-ATA-A-AGTA-AT--A-AAA-TATAT--AGT---TTA--TAGA-A-ACCCT-
* * * ** ** * * * * ** * * *
31517 GAAACACT-ATTCATAAACTATATAAAGTAATAAAC-TATATAGTTTATA-GAAACCCTAAACCC
45 -AACCCCTAAATCATAAACCCTA-AACCTTA-AAACATAAACACTAAACACGAAACCATAAACCA
* ** * * * ** * *
31579 TAAACCCTAA-ACTTTAA-ACCCTAAACACTAAA-CCCTAATGTAAATGGACTAGCACTAATGCA
107 TAAACCCTAATA--TAAATAGACT-AACA-TAAATACAT-ATATATTTGTAATA--A--AA-G--
* * * * * * * * * * * * *
31641 AATAGACTTAT-TTTTGGG-TTTTATTATTACTTAT-T-CAT-AAC-AACA-AAAT--AAATGGG
160 AGTGGGCTTATGTATTGGGCCTATA-TA-AACTAATGTAAATGAACTAGCACTAATGCAAATAGA
* ** * * * * * * * *
31697 C-AATTAAT--GTG-AATTA--ACCTA-ACAT-GCAACTAAAAT--A---CTAATT-ATG-CAAA
223 CTTATTTTTGGGTGTTATTATTACTTATTCATAACAA-TAAAATAAATGGGTTATTAATGTGAAC
** * ** * * ** *
31747 TGAAATTAATATG--ACATTTAGTACTATTTATG--AACCATA-TAATATG-CAATGTGACATAC
287 T-AACCTAACATGCAAC-TAAAATACTAATTATGCAAATGAAATTAATATGAC-ATGT-AC-TAC
* * * ** * *
31806 TAATTATTTAACACCTA-ATTAAT-C-ATGT--TTTA-T-ATAATTT---A--CATTTAA--ATA
347 T-ATTA-TGAAC-CATATAAT-ATGCAATGTGACATACTAATTATTTAACACCCAATTAATCAT-
* * * *
31857 ATTTTAT-TAATTT-TA-TTAAATAAATTTATATAATATGTATGTATAA-ACCATGTATAATATA
407 GTTTTATATAATTTACATTTAAATAATTTTAT-TAAT-TTTAT-TA-AATA--AT-T-T--TATA
* * * * * *
31918 TATAAACTATATACACACACACATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATA
462 TAT---TTATGTATA-A-AC-C--ATGTAT-AA-TATAT--A-TAAACTA--TATATA-TATATA
* * *
31983 GAAATACCAT
511 -TATTA-TAT
*
31993 GCATAAACTATATAAAGTAATAAACTATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACC
1 --ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACC
* * * *
32058 CTAAACTTTAAACCATAAATACTAAACACGGAACCATAAACCATAAACCCTAATATAAATAGACT
64 CTAAACCTTAAAACATAAACACTAAACACGAAACCATAAACCATAAACCCTAATATAAATAGACT
* * * * *
32123 AGCATTAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAATTGAT
129 AACATAAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATATAAACTAAT
*
32188 GTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTTGGTGTTATTATTACTTATTCATAACA
194 GTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTGGGTGTTATTATTACTTATTCATAACA
* *
32253 ACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAAT
259 ATAAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATACTAATTATGCAAAT
* * *
32318 GAAATTAATATGACATGTACTACAATATATGAACCATATAATATGCAATGTGACATATTAAATAT
324 GAAATTAATATGACATGTACTACTAT-TATGAACCATATAATATGCAATGTGACATACTAATTAT
* *
32383 TTAACACCTAATTAATCATGTTTTATCTAATTTACATTTAAATAATTTTATTAATTTTATTAAAT
388 TTAACACCCAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAAAT
*
32448 AATTTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATATATACATATATA
453 AATTTTATAT-AT-T-TATGTATAAACCATGTATAATATATATAAACTATATATATATATATAT-
32513 TATAT
514 TATAT
* *
32518 ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCTTAACCCCTAAATCATAAACCTT
1 ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACCCT
** * * * * * *
32583 AAACCTTAAAATTTAAACCCTAAACTCTAAACTC-TAAACTATAAACCCTAATGTAAATGGACTA
66 AAACCTTAAAACATAAACACTAAACACGAAAC-CATAAACCATAAACCCTAATATAAATAGACTA
* *
32647 ACACT-AATATATATATATTTGTAATAAAAGAGTGGGCTTGTGTATTGGGCCTATATAAACTAAT
130 ACA-TAAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATATAAACTAAT
* * * * *
32711 GTAAATGGATTAGCAGTAATGCAAATATACTTATTTTTGGGTTTTTTTATTATTACTTATTCATA
194 GTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTGGG---TGTTATTATTACTTATTCATA
* *
32776 ACAACAAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATATTAATTATGCA
256 ACAATAAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATACTAATTATGCA
*
32841 AATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGGCATACTAAT
321 AATGAAATTAATATGACATGTACTACTA-TTATGAACCATATAATATGCAATGTGACATACTAAT
*
32906 TATTTAACACCTAATTAATCATGTTTTATATAATTTACA-TT---TAA----A-TAATTTTATTA
385 TATTTAACACCCAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTA
*
32962 AATAA-TTT-TATATTTATGTATAAACCATGTATAATATATTTAAACTATATA
450 AATAATTTTATATATTTATGTATAAACCATGTATAATATATATAAACTATATA
33013 CACACACATA
Statistics
Matches: 1640, Mismatches: 289, Indels: 325
0.73 0.13 0.14
Matches are distributed among these distances:
512 36 0.02
513 13 0.01
514 11 0.01
515 8 0.00
516 8 0.00
517 19 0.01
518 5 0.00
520 67 0.04
521 147 0.09
522 156 0.10
523 424 0.26
524 14 0.01
525 10 0.01
526 199 0.12
527 23 0.01
528 4 0.00
529 22 0.01
530 9 0.01
531 16 0.01
532 29 0.02
533 37 0.02
534 53 0.03
535 29 0.02
536 17 0.01
537 28 0.02
538 12 0.01
539 35 0.02
540 10 0.01
541 10 0.01
542 13 0.01
543 6 0.00
544 12 0.01
545 11 0.01
546 15 0.01
547 50 0.03
548 42 0.03
549 7 0.00
550 3 0.00
551 3 0.00
552 6 0.00
553 9 0.01
554 12 0.01
ACGTcount: A:0.43, C:0.13, G:0.08, T:0.36
Consensus pattern (518 bp):
ATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAACCCCTAAATCATAAACCCT
AAACCTTAAAACATAAACACTAAACACGAAACCATAAACCATAAACCCTAATATAAATAGACTAA
CATAAATACATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATATAAACTAATGT
AAATGAACTAGCACTAATGCAAATAGACTTATTTTTGGGTGTTATTATTACTTATTCATAACAAT
AAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATACTAATTATGCAAATGA
AATTAATATGACATGTACTACTATTATGAACCATATAATATGCAATGTGACATACTAATTATTTA
ACACCCAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAAATAAT
TTTATATATTTATGTATAAACCATGTATAATATATATAAACTATATATATATATATATTATAT
Found at i:31432 original size:2 final size:2
Alignment explanation
Indices: 31427--31461 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
31417 TTTAAACTAT
31427 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
31462 TATAATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:31576 original size:7 final size:7
Alignment explanation
Indices: 31566--31616 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
31556 TAGTTTATAG
31566 AAACCCT
1 AAACCCT
31573 AAACCCT
1 AAACCCT
31580 AAACCCT
1 AAACCCT
**
31587 AAACTTT
1 AAACCCT
31594 AAACCCT
1 AAACCCT
*
31601 AAACACT
1 AAACCCT
31608 AAACCCT
1 AAACCCT
31615 AA
1 AA
31617 TGTAAATGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:31583 original size:49 final size:49
Alignment explanation
Indices: 31482--31583 Score: 127
Period size: 48 Copynumber: 2.1 Consensus size: 49
31472 ATATATAAAC
* **
31482 AAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATTCAT
1 AAACTATATAAAGTAAATAACTTATATAGTTTATAGAAACACTAACCAT
* *
31531 AAACTATATAAAGT-AATAAAC-TATATAGTTTATAGAAACCCTAAACCCT
1 AAACTATATAAAGTAAAT-AACTTATATAGTTTATAGAAACACT-AACCAT
31580 AAAC
1 AAAC
31584 CCTAAACTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
48 23 0.50
49 23 0.50
ACGTcount: A:0.49, C:0.14, G:0.06, T:0.31
Consensus pattern (49 bp):
AAACTATATAAAGTAAATAACTTATATAGTTTATAGAAACACTAACCAT
Found at i:31890 original size:23 final size:25
Alignment explanation
Indices: 31834--31890 Score: 75
Period size: 22 Copynumber: 2.4 Consensus size: 25
31824 TTAATCATGT
*
31834 TTTATATAATTTACATTTAAATAAT
1 TTTATATAATTTACATTTAAATAAA
*
31859 TTTAT-TAATTT-TA-TTAAATAAA
1 TTTATATAATTTACATTTAAATAAA
31881 TTTATATAAT
1 TTTATATAAT
31891 ATGTATGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 13 0.45
23 5 0.17
24 6 0.21
25 5 0.17
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATATAATTTACATTTAAATAAA
Found at i:32500 original size:29 final size:27
Alignment explanation
Indices: 32468--32531 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 27
32458 AATATGTATG
*
32468 TATAAACCATGTATAATATATATAAACTA
1 TATAAA-CATATAT-ATATATATAAACTA
32497 TATATATACATATATATATATATAAACTA
1 TATA-A-ACATATATATATATATAAACTA
32526 TATAAA
1 TATAAA
32532 GTAATAAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
27 1 0.03
28 1 0.03
29 22 0.69
30 7 0.22
31 1 0.03
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.38
Consensus pattern (27 bp):
TATAAACATATATATATATATAAACTA
Found at i:32529 original size:2 final size:2
Alignment explanation
Indices: 32479--32520 Score: 50
Period size: 2 Copynumber: 21.0 Consensus size: 2
32469 ATAAACCATG
* *
32479 TA TA -A TA TA TA TA AA CTA TA TA TA TA CA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
32521 AACTATATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.94
3 1 0.03
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:32613 original size:14 final size:14
Alignment explanation
Indices: 32582--32633 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
32572 TCATAAACCT
* * *
32582 TAAACCTTAAAATT
1 TAAACCCTAAACTA
*
32596 TAAACCCTAAACTC
1 TAAACCCTAAACTA
*
32610 TAAACTCTAAACTA
1 TAAACCCTAAACTA
32624 TAAACCCTAA
1 TAAACCCTAA
32634 TGTAAATGGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCCTAAACTA
Found at i:32964 original size:13 final size:13
Alignment explanation
Indices: 32946--32972 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32936 TAATTTACAT
32946 TTAAATAATTTTA
1 TTAAATAATTTTA
32959 TTAAATAATTTTA
1 TTAAATAATTTTA
32972 T
1 T
32973 ATTTATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAAATAATTTTA
Found at i:33079 original size:2 final size:2
Alignment explanation
Indices: 33020--33070 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
33010 ATACACACAC
33020 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
33062 AT AT AT AT A
1 AT AT AT AT A
33071 AACTATATAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:33164 original size:7 final size:7
Alignment explanation
Indices: 33154--33204 Score: 75
Period size: 7 Copynumber: 7.3 Consensus size: 7
33144 TAGTTTATAG
33154 AAACCCT
1 AAACCCT
33161 AAACCCT
1 AAACCCT
33168 AAACCCT
1 AAACCCT
**
33175 AAACTTT
1 AAACCCT
33182 AAACCCT
1 AAACCCT
*
33189 AAACACT
1 AAACCCT
33196 AAACCCT
1 AAACCCT
33203 AA
1 AA
33205 TGTAAATGGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCCT
Found at i:33171 original size:49 final size:49
Alignment explanation
Indices: 33068--33171 Score: 131
Period size: 49 Copynumber: 2.1 Consensus size: 49
33058 ATATATATAT
* **
33068 ATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGC
1 ATAAACTATATAAAGTAAATAACTTATATAGTTTATAGAAACACTAACC
*
33117 ATAAACTATATAAAGT-AATAAAC-TATATAGTTTATAGAAACCCTAAACC
1 ATAAACTATATAAAGTAAAT-AACTTATATAGTTTATAGAAACACT-AACC
*
33166 CTAAAC
1 ATAAAC
33172 CCTAAACTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
48 23 0.48
49 25 0.52
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (49 bp):
ATAAACTATATAAAGTAAATAACTTATATAGTTTATAGAAACACTAACC
Found at i:33412 original size:492 final size:503
Alignment explanation
Indices: 30596--33569 Score: 1688
Period size: 498 Copynumber: 5.7 Consensus size: 503
30586 ATGTAAATTG
* * *
30596 ATGTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTTGGTGTTATTATTACTTATTCATAA
1 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
*
30661 CAATAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
66 CAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
*
30726 ATGAAATTAATATGACATGTACTACTA-TTATGAACCATATAATATGCAATGTGACATATTAATT
131 ATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
* *
30790 ATTTAACACCCAATTAATCATGTTTTATCTAATTTACATTTAAATAATTTTATTAATTTTATTAA
196 ATTTAACACCTAATTAATCATGTTTTATATAATTTACA-TT---TAA----A-TAATTTTATTAA
* * * *
30855 ATAATTTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATATATATATATA
252 ATAATTTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATA
* *
30920 T-TATATATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCTTAACCCCTAAATCAT
317 TATATATATAAACTATATAAAGTAATAAAATATATAGTATATAGAAA-C-TAA-CACT-AATCAT
* * * * * *
30984 AAACCTTAAACCTTAAAATTTAAACCCTAAACCCTAAACTCTAAACTATAAATCCTAATGTAAAT
378 AAA-CGTAAAACTTAAAATTTAAA--CGAAACACTAAACTATAAACTAT-AA--CTAAAGTAAAT
** * ** * * * *** *** *
31049 GGACTAACACTAATATATATATATATTTGTAATAAAAGAGTGGGCTTGTGTATTGGGCCTATATA
437 AAACTAACACTAATATATAGA-A-ACCTGAAATAAAACACTAAACTTGTGTA-TAACCCTACATA
31114 AACTA
499 AACTA
* *
31119 ATGTAAATGGATTAGCACTAATGC-AATATACTTATTTTTGGGTTTTTATTATTACTTATTCATA
1 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGG-TTTTATTATTACTTATTCATA
* *
31183 ACAAC-AAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATATTAATTATGCA
65 ACAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCA
* *
31247 AATGAAATTAATATGACATGTACTACTATTTATGAATCATATAATATGCAATGTGGCATACTAAT
130 AATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAAT
31312 TATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTA
195 TATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAA----A-T-
* * * *
31377 AATAATTT-TAT-ATATTTATGTATAAACCATGTATAATATATTTAAACTATACACACACACACA
254 AAT--TTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATA
* * * * * * * * * * *
31440 CACACACACACAC-ACACACA--CATATAATATATA-TATAT--AAAC-AA-ACT-AT-ATAAA-
317 TATATATATAAACTATATAAAGTAATAAAATATATAGTATATAGAAACTAACACTAATCATAAAC
* * **
31494 GTAAATTACTTATATAGTTTATA-GAAACACTATTC-ATAAACTAT-A-TAAAGT-AATAAACT-
382 GTAAA--ACTTA-A-AATTTAAACGAAACACTAAACTATAAACTATAACTAAAGTAAATAAACTA
* * * *
31553 ATA-TAGTTTATAGAAACCCT-AAACCCT-AAACCCTAAAC-T-T-TA-AACCCTAAACACTAAA
443 ACACTAATATATAGAAA-CCTGAAA---TAAAACACTAAACTTGTGTATAACCCT--ACA-TAAA
31611 CCCTA
501 --CTA
31616 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
1 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
**
31681 CAACAAAATAAATGGGCAATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
66 CAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
* *
31746 ATGAAATTAATATGACATTTAGTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
131 ATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
31811 ATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAA
196 ATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAA----A-T-A
31876 ATAAATTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACAC--A
255 AT---TTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATA
* * ** * * *
31939 CATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAA-TACCATGCATAAACTA
317 TATATATATAAACTATATAAAGT-AATAAAATATATAGTATATAGAAACTAACA--C-TAATC-A
* * * * * * ** *
32003 TATAAAGTAATAAACTATATAGTTTATA-GAAACCCTAACCCCTAAA-TCATAAACCCTAAACT-
377 TA-AACGT-A-AAACT-TAAAATTTAAACGAAACACTAAACTATAAACT-AT-AA--CTAAAGTA
* * * ** * * **
32065 -TTAAAC---CA-TAA-ATACT--AAACACGGAACCATAAACCA-TAAACCCTAATATAAATAGA
434 AATAAACTAACACTAATATA-TAGAAAC-CTGAA--ATAAAACACTAAA--CTTGTGTATA-ACC
*
32121 CTAGCATTAA-TA
492 CTA-CATAAACTA
* * * * * * ** *
32133 CATATATATTTG--TA--A-TAA---AAGAGTGGGCTTATGTATTGGG-CCTATGTA--AATTGA
1 -ATGTA-AATGGACTAGCACTAATGCAA-A-TAGACTTAT-TTTTGGGTTTTAT-TATTACTT-A
* * * ** ** * * * *
32187 TGTAAATGAACTAGCACTAATGCAAATAGACTTATTTTTTGGTGTTATTATTACTTATTCATAAC
59 T-T-CAT-AAC-AACA-AAAT--AAAT-GGGTTA-TTAAT-GTG-AATTA--ACCTA-ACAT-GC
* ** * * ** * * *
32252 AAC-AAAATAAATGGGTTAT--TAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGC
109 AACTAAAAT-ACT-AATTATGCAAATG-AAATTAATATGACATG----T--ACTACTATTTATG-
** * * **
32314 AAATGAAATTAATATG-ACATGT-AC-TAC-AA-TATATGAACCATATAATATGCAATGTGACAT
164 -AACCATA-TAATATGCA-ATGTGACATACTAATTAT-TTAA-CACCTAAT-T--AA--T--C--
* * * ** *
32374 ATTAAATATTTAACACCTAATTAATCATGTTTTATCTAATTTACATTTAAATAATTTTAT-TAAT
215 A-T--GT-TTT-ATA--TAATTTA-CA---TTTAAATAATTT-TA-TTAAATAATTTTATATAAT
* * *** *
32438 -TTTAT-TAAATAATTTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATA
267 ATGTATGTATA-AACCATGTATAATA--TA--TATAAA-C-----T-ATAT------AC------
* * *
32501 TATACATATATATATATATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCTTAACC
308 -ACACACATATATATATATAAACTATATAAAGTAATAAAATATATAGTATATAGAAA-C-TAA-C
* * * * * *
32566 CCTAAATCATAAACCTTAAACCTTAAAATTTAAACCCTAAACTCTAAACTCTAAACTATAAACCC
369 ACT-AATCATAAA-CGTAAAACTTAAAATTTAAA--CGAAACACTAAACTATAAACTAT-AA--C
* ** * * ** * * * *** ***
32631 TAATGTAAATGGACTAACACTAATATATATATATTTGTAATAAAAGAGTGGGCTTGTGTATTGGG
427 TAAAGTAAATAAACTAACACTAATATATAGAAACCTGAAATAAAACACTAAACTTGTGTA-TAAC
*
32696 CCTATATAAACTA
491 CCTACATAAACTA
* * *
32709 ATGTAAATGGATTAGCAGTAATGCAAATATACTTATTTTTGGGTTTTTTTATTATTACTTATTCA
1 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGG---TTTTATTATTACTTATTCA
* *
32774 TAACAACAAAATAAATGGGTTATTAATGTGAACTAACCTAACATGCAACTAAAATATTAATTATG
63 TAACAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATG
*
32839 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGGCATACTA
128 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTA
32904 ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAA-T
193 ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATT
*
32968 TT-TAT-AT-T-TATGTATAAACCATGTATAATATATTTAAACTATATACACACACATATATATA
258 TTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATATATATA
* * * * *
33029 TATATA-TATATATA-TATATATATATATATA-TATATATATA-TAA-ACT-AT-ATAAA-GTAA
323 TATAAACTATATAAAGTA-ATA-AAATATATAGTATATAGAAACTAACACTAATCATAAACGTAA
* * ** *
33086 ATTACTTATATAGTTTATA-GAAACACTATGC-ATAAACTAT-A-TAAAGT-AATAAACT-ATA-
386 A--ACTTA-A-AATTTAAACGAAACACTAAACTATAAACTATAACTAAAGTAAATAAACTAACAC
* * *
33144 TAGTTTATAGAAACCCT-AAACCCT-AAACCCTAAAC-T-T-TA-AACCCTAAACACTAAACCCT
447 TAATATATAGAAA-CCTGAAA---TAAAACACTAAACTTGTGTATAACCCT--ACA-TAAA--CT
33203 A
503 A
33204 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
1 ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
**
33269 CAACAAAATAAATGGGCAATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
66 CAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
33334 ATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
131 ATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
33399 ATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTATTAA
196 ATTTAACACCTAATTAATCATGTTTTATATAATTTACA-TT---TAA----A-TAATTTTATTAA
* * *
33464 ATAATTTTATATAATATGTATGTATAAATCATGTATAGTATATAT--A-TATAT--ATA-AC-T-
252 ATAATTTTATATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATA
* * ** *
33521 TATATATATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAAC
317 TATATATATAAACTATATAAAGT-AATAAAATATATAGTATATAGAAAC
33570 ACTATGCATA
Statistics
Matches: 1902, Mismatches: 313, Indels: 494
0.70 0.12 0.18
Matches are distributed among these distances:
490 3 0.00
492 192 0.10
493 18 0.01
494 8 0.00
495 62 0.03
496 12 0.01
497 65 0.03
498 215 0.11
499 36 0.02
500 25 0.01
501 77 0.04
502 11 0.01
503 26 0.01
504 10 0.01
505 19 0.01
506 38 0.02
507 10 0.01
508 6 0.00
509 7 0.00
510 5 0.00
511 20 0.01
512 32 0.02
513 15 0.01
514 46 0.02
515 27 0.01
516 13 0.01
517 19 0.01
518 20 0.01
519 15 0.01
520 66 0.03
521 14 0.01
522 112 0.06
523 119 0.06
524 4 0.00
525 4 0.00
526 5 0.00
527 12 0.01
528 17 0.01
529 4 0.00
531 1 0.00
532 6 0.00
533 3 0.00
534 18 0.01
535 9 0.00
536 21 0.01
537 18 0.01
538 6 0.00
539 8 0.00
540 2 0.00
541 10 0.01
542 1 0.00
544 3 0.00
545 10 0.01
546 14 0.01
547 7 0.00
548 13 0.01
549 3 0.00
550 6 0.00
551 11 0.01
552 4 0.00
553 1 0.00
554 1 0.00
555 10 0.01
556 3 0.00
557 8 0.00
558 2 0.00
559 11 0.01
560 7 0.00
561 9 0.00
562 16 0.01
563 5 0.00
564 1 0.00
567 4 0.00
568 18 0.01
569 20 0.01
570 12 0.01
571 24 0.01
572 57 0.03
573 8 0.00
574 11 0.01
575 13 0.01
576 17 0.01
577 8 0.00
578 9 0.00
579 17 0.01
580 11 0.01
581 3 0.00
582 5 0.00
583 5 0.00
584 3 0.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.36
Consensus pattern (503 bp):
ATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAA
CAACAAAATAAATGGGTTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAA
ATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATT
ATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAAATAATTTTA
TATAATATGTATGTATAAACCATGTATAATATATATAAACTATATACACACACATATATATATAT
AAACTATATAAAGTAATAAAATATATAGTATATAGAAACTAACACTAATCATAAACGTAAAACTT
AAAATTTAAACGAAACACTAAACTATAAACTATAACTAAAGTAAATAAACTAACACTAATATATA
GAAACCTGAAATAAAACACTAAACTTGTGTATAACCCTACATAAACTA
Found at i:33537 original size:13 final size:15
Alignment explanation
Indices: 33506--33539 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
33496 GTATAGTATA
33506 TATATATATATAACT
1 TATATATATATAACT
33521 TATATATATA-AAC-
1 TATATATATATAACT
33534 TATATA
1 TATATA
33540 AAATAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 3 0.16
15 10 0.53
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
TATATATATATAACT
Found at i:33665 original size:21 final size:21
Alignment explanation
Indices: 33641--33680 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33631 CCCTAATCCC
*
33641 TAAACTTTAAACCATAAATAT
1 TAAACATTAAACCATAAATAT
*
33662 TAAACATTAAACCCTAAAT
1 TAAACATTAAACCATAAAT
33681 CACAAACCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (21 bp):
TAAACATTAAACCATAAATAT
Found at i:33687 original size:21 final size:21
Alignment explanation
Indices: 33627--33687 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 21
33617 CCATAAACCC
* *
33627 TAAACCCT-AATCCCTAAACTT
1 TAAACCCTAAATCAC-AAACAT
* *
33648 TAAACCATAAAT-ATTAAACAT
1 TAAACCCTAAATCA-CAAACAT
33669 TAAACCCTAAATCACAAAC
1 TAAACCCTAAATCACAAAC
33688 CCTAATATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
21 27 0.87
22 4 0.13
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.25
Consensus pattern (21 bp):
TAAACCCTAAATCACAAACAT
Found at i:33926 original size:564 final size:554
Alignment explanation
Indices: 33201--34441 Score: 1972
Period size: 564 Copynumber: 2.2 Consensus size: 554
33191 ACACTAAACC
*
33201 CTAATGTAAATGGACTAGCACTAATGCAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCA
1 CTAATGTAAATGGACTAGCACTAATGCAAATTGACTTATTTTTGGGTTTTATTATTACTTATTCA
*
33266 TAACAACAAAATAAATGGGCAATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATG
66 TAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATG
33331 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTA
131 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTA
33396 ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTAT
196 ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTAT
33461 TAAATAATTTTATATAATATGTATGTATAAATCATGTATAGTATATATATATATATAACTTATAT
261 TAAATAATTTTATATAATATGTATGTATAAATCATGTATAG--TATATATATATATAACTTATAT
33526 ATATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAA
324 ATATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAA
* * *
33591 GTAATAAATTATATAGTTTAT-AGAAACCATAAACCCTAAACCCTAATCCCTAAACTTTAAACCA
389 GTAATAAATTATATAGTTTATAAAAAACC-TAAACCCTAAACCATAAACCCTAAACTTTAAACCA
* *
33655 TAAATAT-TAAACATTAAACCC-TAAAT-CACAAACCCTAATATAAATAGACTAGCACTAATGAA
453 TAAAT-TCTAAACACTAAACCCATAAATGCACAAACACTAATAT--ATAGA-TA-CA-T-AT--A
* * *
33717 TATATATTTGTAATAAAAAAGTGGGTTTATGTATTGGGCCTATGTAAA
509 TATATATTTGTAATAAAAAAG-GAG-TTATGCATTGAGCCTATGTAAA
* * *
33765 CTAATGTAAATGGATTAGCACCAATGCAAATTGACTTATTTTTTGGTTTTATTATTACTTATTCA
1 CTAATGTAAATGGACTAGCACTAATGCAAATTGACTTATTTTTGGGTTTTATTATTACTTATTCA
* * *
33830 TAACAACAAAATAAATAGGCTATTGATGTGAATTAATCTAACATGCAACTAAAATACTAATTATG
66 TAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATG
*
33895 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGGCATACTA
131 CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTA
*
33960 ATTATTTAACACCTAATTAATCATGTTTTATCTAATTTACATTTAAATAATTTTATTAATTTTAT
196 ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTAT
34025 TAAATAATTTTATATAATATGTATGTATAAATCATGTATAGTATATATATATATAACTTATATAT
261 TAAATAATTTTATATAATATGTATGTATAAATCATGTATAGTATATATATATATAACTTATATAT
34090 ATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAAGT
326 ATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAAGT
* * * *
34155 AATAAATTATATAGTTTATAAAAAACCTAACCCCTAAATCATAAACTCTAAACTTTAAACCCTAA
391 AATAAATTATATAGTTTATAAAAAACCTAAACCCTAAACCATAAACCCTAAACTTTAAACCATAA
* * * * * *
34220 ATTCTAAACCCTAAACCCTAATGTAAATGGACTAGCACTAATATATATATATATATATATATATT
456 ATTCTAAACACTAAACCC--A--TAAATGCACAAACACTAATATATAGATACATATATATATATT
* *
34285 TGTAATAAAAGAGGAGTTGTGCATTGAGCCTATGTAAA
517 TGTAATAAAAAAGGAGTTATGCATTGAGCCTATGTAAA
34323 CTAATGTAAATGGACTAGCACTAATGCAAATAT-ACTTATTTTTGGGTTTTTATTATTACTTATT
1 CTAATGTAAATGGACTAGCACTAATGCAAAT-TGACTTATTTTTGGG-TTTTATTATTACTTATT
* *
34387 CATAACAACAAAATAAATGGGTTATTAATGTGAACTAACCT-ACATGCAACTAAAA
64 CATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAA
34442 AGTGGGAATG
Statistics
Matches: 629, Mismatches: 38, Indels: 26
0.91 0.05 0.04
Matches are distributed among these distances:
558 74 0.12
559 56 0.09
560 21 0.03
561 1 0.00
562 156 0.25
563 7 0.01
564 292 0.46
565 2 0.00
566 4 0.01
567 5 0.01
568 11 0.02
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.37
Consensus pattern (554 bp):
CTAATGTAAATGGACTAGCACTAATGCAAATTGACTTATTTTTGGGTTTTATTATTACTTATTCA
TAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATG
CAAATGAAATTAATATGACATGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTA
ATTATTTAACACCTAATTAATCATGTTTTATATAATTTACATTTAAATAATTTTATTAATTTTAT
TAAATAATTTTATATAATATGTATGTATAAATCATGTATAGTATATATATATATAACTTATATAT
ATAAACTATATAAAATAAATTACTTATATAGTTTATAGAAACACTATGCATAAACTATATAAAGT
AATAAATTATATAGTTTATAAAAAACCTAAACCCTAAACCATAAACCCTAAACTTTAAACCATAA
ATTCTAAACACTAAACCCATAAATGCACAAACACTAATATATAGATACATATATATATATTTGTA
ATAAAAAAGGAGTTATGCATTGAGCCTATGTAAA
Found at i:34099 original size:13 final size:15
Alignment explanation
Indices: 34068--34101 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
34058 ATGTATAGTA
34068 TATATATATATAACT
1 TATATATATATAACT
34083 TATATATATA-AAC-
1 TATATATATATAACT
34096 TATATA
1 TATATA
34102 AAATAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 3 0.16
15 10 0.53
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
TATATATATATAACT
Found at i:34206 original size:7 final size:7
Alignment explanation
Indices: 34180--34240 Score: 50
Period size: 7 Copynumber: 8.7 Consensus size: 7
34170 TTATAAAAAA
*
34180 CCTAACC
1 CCTAAAC
*
34187 CCTAAAT
1 CCTAAAC
*
34194 CATAAAC
1 CCTAAAC
*
34201 TCTAAAC
1 CCTAAAC
**
34208 TTTAAAC
1 CCTAAAC
*
34215 CCTAAAT
1 CCTAAAC
*
34222 TCTAAAC
1 CCTAAAC
34229 CCTAAAC
1 CCTAAAC
34236 CCTAA
1 CCTAA
34241 TGTAAATGGA
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.25
Consensus pattern (7 bp):
CCTAAAC
Found at i:34213 original size:14 final size:15
Alignment explanation
Indices: 34196--34235 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
34186 CCCTAAATCA
*
34196 TAAACTCTAAACTT-
1 TAAACCCTAAACTTC
34210 TAAACCCTAAA-TTC
1 TAAACCCTAAACTTC
34224 TAAACCCTAAAC
1 TAAACCCTAAAC
34236 CCTAATGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 2 0.09
14 21 0.91
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAACCCTAAACTTC
Found at i:34234 original size:21 final size:21
Alignment explanation
Indices: 34177--34240 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 21
34167 AGTTTATAAA
* * *
34177 AAAC-CTAACCCCTAAATCAT
1 AAACTCTAAACCCTAAACCCT
**
34197 AAACTCTAAACTTTAAACCCT
1 AAACTCTAAACCCTAAACCCT
*
34218 AAATTCTAAACCCTAAACCCT
1 AAACTCTAAACCCTAAACCCT
34239 AA
1 AA
34241 TGTAAATGGA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 4 0.11
21 31 0.89
ACGTcount: A:0.45, C:0.31, G:0.00, T:0.23
Consensus pattern (21 bp):
AAACTCTAAACCCTAAACCCT
Found at i:35129 original size:37 final size:36
Alignment explanation
Indices: 35079--35317 Score: 139
Period size: 39 Copynumber: 6.5 Consensus size: 36
35069 ATATATACAC
* ** *
35079 ATATATATTATATAGTTTGCAAATTGTTTTTGAAAAT
1 ATATATATAATATAGTTTTAAAAAT-TTTTTGAAAAT
*
35116 ACATATATAATATATAGTTTTAAAACATTTTTTGAAAAT
1 ATATATAT-A-ATATAGTTTTAAAA-ATTTTTTGAAAAT
* * * *
35155 ATGTATATTATATAGTTTTTAAAATATTTTGAAAAT
1 ATATATATAATATAGTTTTAAAAATTTTTTGAAAAT
* **
35191 -TATATA-AATATAGTTTTTGAAAACGTTTT-AAAAT
1 ATATATATAATATAG-TTTTAAAAATTTTTTGAAAAT
* ** ** * *
35225 ATATA-AT-ATATACTTTTGGAAACGTTATGAAAAC
1 ATATATATAATATAGTTTTAAAAATTTTTTGAAAAT
* * **
35259 ATTTATATAATATATAATTTTTAAAAACCATTTTGAAAAT
1 ATATATAT-A-ATAT-AGTTTTAAAAA-TTTTTTGAAAAT
35299 ATATATA-ATATATAGTTTT
1 ATATATATA-ATATAGTTTT
35318 TTTAAAACAT
Statistics
Matches: 161, Mismatches: 28, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
33 13 0.08
34 25 0.16
35 23 0.14
36 12 0.07
37 25 0.16
38 10 0.06
39 37 0.23
40 16 0.10
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.45
Consensus pattern (36 bp):
ATATATATAATATAGTTTTAAAAATTTTTTGAAAAT
Found at i:35175 original size:38 final size:37
Alignment explanation
Indices: 35105--35343 Score: 194
Period size: 38 Copynumber: 6.5 Consensus size: 37
35095 TTGCAAATTG
35105 TTTTTGAAAATACATATATAATATATAG-TTTTAAAACA
1 TTTTTGAAAAT--ATATATAATATATAGTTTTTAAAACA
* * *
35143 TTTTTTGAAAATATGTATATTATATAGTTTTTAAAATA
1 -TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
35181 -TTTTGAAAAT-TATATAA-ATATAGTTTTTGAAAAC-
1 TTTTTGAAAATATATATAATATATAGTTTTT-AAAACA
* * **
35215 GTTTT--AAA-ATATATAATATATACTTTTGGAAAC-
1 TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
* * * *
35248 GTTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTTG-AAA-ATATATATAATATATAGTTTTT-AAAA-CA
35289 -TTTTGAAAATATATATAATATATAGTTTTTTTAAAACA
1 TTTTTGAAAATATATATAATATATAG--TTTTTAAAACA
* *
35327 -TTTTAAAAATTTATATA
1 TTTTTGAAAATATATATA
35344 TTTTTGAAAA
Statistics
Matches: 166, Mismatches: 19, Indels: 31
0.77 0.09 0.14
Matches are distributed among these distances:
33 18 0.11
34 20 0.12
35 13 0.08
36 12 0.07
37 14 0.08
38 58 0.35
39 21 0.13
40 10 0.06
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (37 bp):
TTTTTGAAAATATATATAATATATAGTTTTTAAAACA
Found at i:38494 original size:19 final size:19
Alignment explanation
Indices: 38472--38517 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
38462 ATTTAGACAT
*
38472 TTTGCATTTTTTTATTTTC
1 TTTGCATTTTATTATTTTC
38491 TTTGCATTTTATTATTTTC
1 TTTGCATTTTATTATTTTC
*
38510 TCTGCATT
1 TTTGCATT
38518 CACATTAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (19 bp):
TTTGCATTTTATTATTTTC
Found at i:42470 original size:84 final size:82
Alignment explanation
Indices: 41869--42487 Score: 587
Period size: 81 Copynumber: 7.6 Consensus size: 82
41859 TAAACAAACT
* * * * * *
41869 ATTTGCAGCTTAGCTCAAGGCCAGAAGGGCTA-C-CTGCCACCAAGACCTTCGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCA--AAGACCTTTGAGTTCGACTACG
41932 CTCAGCTCCAAGGCACATC
64 CTCAGCTCCAAGGCACATC
* * ** * *
41951 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATC--TGCCAAAGACCCTCAAGTTCGATTACACT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCAAAGACCTTTGAGTTCGACTACGCT
* * *
42014 CAGCTTCAAGGGCATAAC
66 CAGCTCCAA-GGCACATC
* * * * * *
42032 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAG-CAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-T-GCCAAAGACCTTTGAGTTCGACTACG
*
42096 CTCAGCTCCTAGGCACATC
64 CTCAGCTCCAAGGCACATC
* * * * *
42115 ATTTGCAGAATAGCTTAAGTCGAGAAGGGCTATC--TGCCAAAGACCCTTAAGTTCGATTACACT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCAAAGACCTTTGAGTTCGACTACGCT
* * *
42178 CAGCTTCAAGGGCATAAC
66 CAGCTCCAA-GGCACATC
* * * * * *
42196 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTTAG-CAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTG-T-GCCAAAGACCTTTGAGTTCGACTACG
42260 CTCAGCTCCAAGGCACATC
64 CTCAGCTCCAAGGCACATC
* * *** * *
42279 ATTTGCAGAATAGCTTAAGTCAAGAAGGGCTATC--TGCCAAAGACCCCCGAGTTCGATTACACT
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCAAAGACCTTTGAGTTCGACTACGCT
* *
42342 CAGCTTCGAGAGCACATC
66 CAGCTCCAAG-GCACATC
* * * * * *
42360 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTGACCAAAAGACCTTTGAGTTCGACTACG
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTG-CC-AAAGACCTTTGAGTTCGACTACG
42425 CTCAGCTCCAAGGCACATC
64 CTCAGCTCCAAGGCACATC
*
42444 ATATGCAGCATAGCTTAAGTCGAGAAGGGCTATC--TGCCAAAGAC
1 ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCAAAGAC
42488 TCCCGAGTTC
Statistics
Matches: 427, Mismatches: 92, Indels: 38
0.77 0.17 0.07
Matches are distributed among these distances:
79 2 0.00
80 94 0.22
81 102 0.24
82 34 0.08
83 69 0.16
84 96 0.22
85 30 0.07
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (82 bp):
ATTTGCAGCATAGCTTAAGTCGAGAAGGGCTATCTGTGCCAAAGACCTTTGAGTTCGACTACGCT
CAGCTCCAAGGCACATC
Found at i:42495 original size:165 final size:164
Alignment explanation
Indices: 41910--42557 Score: 1055
Period size: 164 Copynumber: 3.9 Consensus size: 164
41900 ACCTGCCACC
*
41910 AAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
41975 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
42040 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
*
42074 AAGACCTTTGAGTTCGACTACGCTCAGCTCCTAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
*
42139 AAGGGCTATCTGCCAAAGACCCTTAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
42204 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
*
42238 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCAAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * * *
42303 AAGGGCTATCTGCCAAAGACCCCCGAGTTCGATTACACTCAGCTTCGAGAGCACATCATTTACAG
66 AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
* *
42368 CATAACTCAAGGCTAGAAGGGTTATCTGTGACCAA
131 CATAACTCAAGGCTAGAAGGGTTATCTGTTAGC-A
* *
42403 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATATGCAGCATAGCTTAAGTCGAG
1 AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
* * * * *
42468 AAGGGCTATCTGCCAAAGACTCC-CGAGTTCGATTACACTCAACTTCGAGGTCATATCATTTACA
66 AAGGGCTATCTGCCAAAGAC-CCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACA
* * * * *
42532 ACATAATTCATGGCAAGAAAGGTTAT
130 GCATAACTCAAGGCTAGAAGGGTTAT
42558 TTGTCAATAA
Statistics
Matches: 456, Mismatches: 26, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
164 313 0.69
165 141 0.31
166 2 0.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (164 bp):
AAGACCTTTGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGAATAGCTTAAGTCGAG
AAGGGCTATCTGCCAAAGACCCTCAAGTTCGATTACACTCAGCTTCAAGGGCATAACATTTACAG
CATAACTCAAGGCTAGAAGGGTTATCTGTTAGCA
Found at i:43197 original size:38 final size:37
Alignment explanation
Indices: 43117--43352 Score: 125
Period size: 36 Copynumber: 6.4 Consensus size: 37
43107 ATATATACAC
* * * * *
43117 ATATATTATATAGTTTGCAAATTGTTTTTGAAAATACAT
1 ATATAATATATAGTTT-AAAAATATTTTTGAAAATA-TT
43156 ATATAATATATAGTTTAAAACAT-TTTTTGAAAATATGT
1 ATATAATATATAGTTTAAAA-ATATTTTTGAAAATAT-T
*
43194 ATAT--TATATAGTTTTTAAAATATTTTTG-AAA-ATT
1 ATATAATATATAG-TTTAAAAATATTTTTGAAAATATT
* **
43228 ATATAATATATAGTTTTTGAAAA-CGTTTT-AAAATA-T
1 ATATAATATATAG--TTTAAAAATATTTTTGAAAATATT
* ** ** * *
43264 ATATAATATATACTTTTGGAAA-CGTTATGAAAACATTT
1 ATATAATATATA-GTTTAAAAATATTTTTGAAAATA-TT
* *
43302 ATATAATATATAATTTTTAAAAACCA-TTTTGAAAATA-T
1 ATATAATATAT-A-GTTTAAAAA-TATTTTTGAAAATATT
43340 ATATAATATATAG
1 ATATAATATATAG
43353 GTTTTTTAAA
Statistics
Matches: 162, Mismatches: 19, Indels: 35
0.75 0.09 0.16
Matches are distributed among these distances:
34 5 0.03
35 14 0.09
36 44 0.27
37 22 0.14
38 44 0.27
39 24 0.15
40 9 0.06
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.44
Consensus pattern (37 bp):
ATATAATATATAGTTTAAAAATATTTTTGAAAATATT
Found at i:43368 original size:38 final size:37
Alignment explanation
Indices: 43142--43382 Score: 217
Period size: 38 Copynumber: 6.5 Consensus size: 37
43132 TGCAAATTGT
43142 TTTTGAAAATACATATATAATATATAG---TTTAAAACA
1 TTTTGAAAAT--ATATATAATATATAGTTTTTTAAAACA
* * *
43178 TTTTTTGAAAATATGTATATTATATAG-TTTTTAAAATA
1 --TTTTGAAAATATATATAATATATAGTTTTTTAAAACA
* *
43216 TTTTTGAAAAT-TATATAATATATAGTTTTTGAAAACG
1 -TTTTGAAAATATATATAATATATAGTTTTTTAAAACA
* ** *
43253 TTTT-AAAATATATATAATATATA-CTTTTGGAAACG
1 TTTTGAAAATATATATAATATATAGTTTTTTAAAACA
* * * *
43288 TTATGAAAACATTTATATAATATATAATTTTTAAAAACCA
1 TTTTG-AAA-ATATATATAATATATAGTTTTTTAAAA-CA
43328 TTTTGAAAATATATATAATATATAGGTTTTTTAAAACA
1 TTTTGAAAATATATATAATATATA-GTTTTTTAAAACA
* *
43366 TTTTAAAAATTTATATA
1 TTTTGAAAATATATATA
43383 TTTTTGAAAA
Statistics
Matches: 171, Mismatches: 22, Indels: 20
0.80 0.10 0.09
Matches are distributed among these distances:
35 18 0.11
36 42 0.25
37 22 0.13
38 65 0.38
39 19 0.11
40 5 0.03
ACGTcount: A:0.45, C:0.04, G:0.07, T:0.45
Consensus pattern (37 bp):
TTTTGAAAATATATATAATATATAGTTTTTTAAAACA
Found at i:52934 original size:20 final size:20
Alignment explanation
Indices: 52909--52946 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
52899 TTTTGGTGCA
52909 GAGGGAATCGATACCCCCAT
1 GAGGGAATCGATACCCCCAT
*
52929 GAGGGAATCGATTCCCCC
1 GAGGGAATCGATACCCCC
52947 TTTGAAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (20 bp):
GAGGGAATCGATACCCCCAT
Found at i:56653 original size:14 final size:14
Alignment explanation
Indices: 56611--56653 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
56601 TTAATTAAAT
*
56611 GTTCGTTTATGTTC
1 GTTCATTTATGTTC
*
56625 ATTCATTTATGTTC
1 GTTCATTTATGTTC
56639 GTTCATTTATGTTC
1 GTTCATTTATGTTC
56653 G
1 G
56654 AACAGAGGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.56
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:56927 original size:10 final size:10
Alignment explanation
Indices: 56914--56963 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
56904 GTGTTTTTGT
56914 TGTTCGTTTA
1 TGTTCGTTTA
*
56924 TGTTTGTTTA
1 TGTTCGTTTA
**
56934 T-TGT-GTTCG
1 TGT-TCGTTTA
56943 TGTTCGTTTA
1 TGTTCGTTTA
56953 TGTTCGTTTA
1 TGTTCGTTTA
56963 T
1 T
56964 TATTTAAATG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
9 6 0.19
10 26 0.81
ACGTcount: A:0.08, C:0.08, G:0.22, T:0.62
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:71185 original size:2 final size:2
Alignment explanation
Indices: 71178--71203 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71168 GATAGTTTGA
71178 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71204 GAATAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71808 original size:31 final size:31
Alignment explanation
Indices: 71760--71854 Score: 111
Period size: 31 Copynumber: 3.1 Consensus size: 31
71750 TGAAGAAATA
*
71760 AATGAAAAATAA-TTTAATAAAAAATTTTAAT
1 AATGAAAAA-AACCTTAATAAAAAATTTTAAT
* *
71791 AATTAAAAAAACCTTAATAAAAAACTTTAAT
1 AATGAAAAAAACCTTAATAAAAAATTTTAAT
*** *
71822 AATGAAAAAGGTCTTAATAGAAAATTTTAAT
1 AATGAAAAAAACCTTAATAAAAAATTTTAAT
71853 AA
1 AA
71855 AAATAAAGAG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
30 2 0.04
31 52 0.96
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.32
Consensus pattern (31 bp):
AATGAAAAAAACCTTAATAAAAAATTTTAAT
Found at i:72172 original size:19 final size:19
Alignment explanation
Indices: 72144--72186 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
72134 TTTTCATAAA
*
72144 TAATTCTTTTATTTTATTCTT
1 TAATT-TTTT-TTATATTCTT
*
72165 TAATTTTTTTTATATTTTT
1 TAATTTTTTTTATATTCTT
72184 TAA
1 TAA
72187 GTTGGTGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 4 0.20
21 5 0.25
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (19 bp):
TAATTTTTTTTATATTCTT
Found at i:78640 original size:3 final size:3
Alignment explanation
Indices: 78632--78661 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
78622 CCAGCAAAAC
78632 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
78662 TTCAGCTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:78812 original size:14 final size:14
Alignment explanation
Indices: 78795--78821 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
78785 AATCCCCAAA
78795 ACCAAATCCACATC
1 ACCAAATCCACATC
78809 ACCAAATCCACAT
1 ACCAAATCCACAT
78822 GCTTCACCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (14 bp):
ACCAAATCCACATC
Found at i:79692 original size:12 final size:12
Alignment explanation
Indices: 79675--79700 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79665 AAATTTAGTT
79675 TAATTAATATTA
1 TAATTAATATTA
79687 TAATTAATATTA
1 TAATTAATATTA
79699 TA
1 TA
79701 TGTACAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATTAATATTA
Found at i:82497 original size:42 final size:42
Alignment explanation
Indices: 82440--82543 Score: 172
Period size: 42 Copynumber: 2.5 Consensus size: 42
82430 GGTCTCAAAC
*
82440 CCATCACCCACCCACTACCCGTGACGGGTACCACTTTCTAAAT
1 CCAT-ACCCACCCACTACCCGTGACAGGTACCACTTTCTAAAT
* *
82483 CCATACTCGCCCACTACCCGTGACAGGTACCACTTTCTAAAT
1 CCATACCCACCCACTACCCGTGACAGGTACCACTTTCTAAAT
82525 CCATACCCACCCACTACCC
1 CCATACCCACCCACTACCC
82544 ACTAAAGTAA
Statistics
Matches: 56, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
42 52 0.93
43 4 0.07
ACGTcount: A:0.26, C:0.44, G:0.10, T:0.20
Consensus pattern (42 bp):
CCATACCCACCCACTACCCGTGACAGGTACCACTTTCTAAAT
Found at i:93505 original size:41 final size:41
Alignment explanation
Indices: 93420--93738 Score: 316
Period size: 41 Copynumber: 7.7 Consensus size: 41
93410 ACAAATGGTA
* * * * *
93420 ACTTTAGCGGCGTTTTTATACAAAACGCCACGACAGAGTAGT
1 ACTTTAGCGGCGTTTTTATAC-AAACGCCGCTATAGACTCGT
*
93462 ACTTTAGCGACGTTTTTATACAAACGCCGCTATAGACTCGT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCTATAGACTCGT
* * * * * *
93503 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGAGTAGA
1 ACTTTAGCGGCGTTTTTATAC-AAACGCCGCTATAGACTCGT
* * *
93545 ACTTTAGCGGTGTTTTTATACAAACGCCGCTATAAACTCAT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCTATAGACTCGT
* * *
93586 ACTTTAGTGGCGTTTTTATAAAAACGCCG-TAATAGACTTGT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCT-ATAGACTCGT
* * *
93627 ACTTTAGTGGCGTTTTTATACAAACGCCGCTATAGGCTTGT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCTATAGACTCGT
** * * * *
93668 ACTTTAGTAGCATTTTTGTACAAACGTCGCGATAGACTCGT
1 ACTTTAGCGGCGTTTTTATACAAACGCCGCTATAGACTCGT
** ** *
93709 ACAGTAGTAGCATTTTTATACAAACGCCGC
1 ACTTTAGCGGCGTTTTTATACAAACGCCGC
93739 AAGTTTAAAG
Statistics
Matches: 233, Mismatches: 41, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
40 1 0.00
41 177 0.76
42 55 0.24
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (41 bp):
ACTTTAGCGGCGTTTTTATACAAACGCCGCTATAGACTCGT
Found at i:93640 original size:124 final size:124
Alignment explanation
Indices: 93419--93654 Score: 334
Period size: 124 Copynumber: 1.9 Consensus size: 124
93409 CACAAATGGT
* * *
93419 AACTTTAGCGGCGTTTTTATACAAAACGCCACGACAGAGTAGTACTTTAGCGACGTTTTTATACA
1 AACTTTAGCGGCGTTTTTATACAAAACGCCACGACAAACTAGTACTTTAGCGACGTTTTTATAAA
93484 AACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGAGTAG
66 AACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTTATAC-AAACGCCACGATAGAGTAG
* * * * * *
93544 AACTTTAGCGGTGTTTTTATAC-AAACGCCGCTATAAACTCA-TACTTTAGTGGCGTTTTTATAA
1 AACTTTAGCGGCGTTTTTATACAAAACGCCACGACAAACT-AGTACTTTAGCGACGTTTTTATAA
*
93607 AAACGCCG-TAATAGACTTGTACTTTAGTGGCGTTTTTATACAAACGCC
65 AAACGCCGCT-ATAGACTCGTACTTTAGTGGCGTTTTTATACAAACGCC
93655 GCTATAGGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
123 8 0.08
124 69 0.70
125 22 0.22
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.32
Consensus pattern (124 bp):
AACTTTAGCGGCGTTTTTATACAAAACGCCACGACAAACTAGTACTTTAGCGACGTTTTTATAAA
AACGCCGCTATAGACTCGTACTTTAGTGGCGTTTTTATACAAACGCCACGATAGAGTAG
Found at i:93671 original size:82 final size:83
Alignment explanation
Indices: 93420--93738 Score: 381
Period size: 82 Copynumber: 3.9 Consensus size: 83
93410 ACAAATGGTA
* * * *
93420 ACTTTAGCGGCGTTTTTATACAAAACGCCACGACAGAGTAGTACTTTAGCGACGTTTTTATACAA
1 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGACTAGTACTTTAGCGGCGTTTTTATACAA
93485 ACGCCGCTATAGACTCGT
66 ACGCCGCTATAGACTCGT
* * *
93503 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGAGTAGAACTTTAGCGGTGTTTTTATACAA
1 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGACTAGTACTTTAGCGGCGTTTTTATACAA
* *
93568 ACGCCGCTATAAACTCAT
66 ACGCCGCTATAGACTCGT
*** * *
93586 ACTTTAGTGGCGTTTTTATA-AAAACGCCGTAATAGACTTGTACTTTAGTGGCGTTTTTATACAA
1 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGACTAGTACTTTAGCGGCGTTTTTATACAA
* *
93650 ACGCCGCTATAGGCTTGT
66 ACGCCGCTATAGACTCGT
* * * * * * ** ** *
93668 ACTTTAGTAGCATTTTTGTAC-AAACGTCGCGATAGACTCGTACAGTAGTAGCATTTTTATACAA
1 ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGACTAGTACTTTAGCGGCGTTTTTATACAA
93732 ACGCCGC
66 ACGCCGC
93739 AAGTTTAAAG
Statistics
Matches: 205, Mismatches: 30, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
82 109 0.53
83 96 0.47
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (83 bp):
ACTTTAGTGGCGTTTTTATACAAAACGCCACGATAGACTAGTACTTTAGCGGCGTTTTTATACAA
ACGCCGCTATAGACTCGT
Found at i:97129 original size:43 final size:41
Alignment explanation
Indices: 97082--97207 Score: 126
Period size: 42 Copynumber: 3.0 Consensus size: 41
97072 TCATAATATA
* *
97082 TAGCGGCGTTTTGTTATACAAACGCCACTAAAAACAAGAGATT
1 TAGCGGCGTTTTGCTA-A-AAACGCCACTAAAAACAAGAGAAT
* * * * *
97125 TAGCGGCGTTTTGGCCAAAAACGCCACTAAATATAGGATAAT
1 TAGCGGCGTTTT-GCTAAAAACGCCACTAAAAACAAGAGAAT
* * *
97167 TAGCGGCGTTTTTGGTAAAAACTCTACTAAAAACAAGAGAA
1 TAGCGGCG-TTTTGCTAAAAACGCCACTAAAAACAAGAGAA
97208 ATAGTGGCAT
Statistics
Matches: 66, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
42 47 0.71
43 17 0.26
44 2 0.03
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (41 bp):
TAGCGGCGTTTTGCTAAAAACGCCACTAAAAACAAGAGAAT
Found at i:97155 original size:42 final size:42
Alignment explanation
Indices: 97101--97235 Score: 130
Period size: 42 Copynumber: 3.2 Consensus size: 42
97091 TTTGTTATAC
*
97101 AAACGCCACTAAAAACAAGAGATTTAGCGGCG-TTTTGGCCAA
1 AAACGCCACTAAAAACAAGAGAATTAGCGGCGTTTTTGG-CAA
* * * * *
97143 AAACGCCACTAAATATAGGATAATTAGCGGCGTTTTTGGTAA
1 AAACGCCACTAAAAACAAGAGAATTAGCGGCGTTTTTGGCAA
* * * * *
97185 AAACTCTACTAAAAACAAGAGAAATAGTGGCATTTGTT-GCAA
1 AAACGCCACTAAAAACAAGAGAATTAGCGGCGTTT-TTGGCAA
*
97227 AAAAGCCAC
1 AAACGCCAC
97236 GGCCCTTAAA
Statistics
Matches: 72, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
42 64 0.89
43 8 0.11
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (42 bp):
AAACGCCACTAAAAACAAGAGAATTAGCGGCGTTTTTGGCAA
Found at i:99107 original size:12 final size:12
Alignment explanation
Indices: 99080--99113 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
99070 TAATCCCCTC
*
99080 CCCGATTACCCGG
1 CCCGA-TACCCAG
99093 CCCGATACCCAG
1 CCCGATACCCAG
99105 CCCGATACC
1 CCCGATACC
99114 TTACCCGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.21, C:0.50, G:0.18, T:0.12
Consensus pattern (12 bp):
CCCGATACCCAG
Found at i:100288 original size:2 final size:2
Alignment explanation
Indices: 100267--100356 Score: 64
Period size: 2 Copynumber: 46.5 Consensus size: 2
100257 TACATCCTAT
* * *
100267 TA TA -A TA TA TA -A TA TA -A TA TA TA TA CTC TA TA TA TT TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA
* * * *
100307 AA TA TA TG TA TA TA CTA TA -A CA CA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
100348 TA TA TA TA T
1 TA TA TA TA T
100357 TCTAAAAACT
Statistics
Matches: 72, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
1 5 0.07
2 64 0.89
3 3 0.04
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.46
Consensus pattern (2 bp):
TA
Found at i:100301 original size:27 final size:26
Alignment explanation
Indices: 100267--100355 Score: 78
Period size: 27 Copynumber: 3.5 Consensus size: 26
100257 TACATCCTAT
100267 TATA-ATATATAATATAATATATATA
1 TATATATATATAATATAATATATATA
* ** *
100292 CTCTATATAT-TTTTA-AATATATGTA
1 -TATATATATATAATATAATATATATA
*
100317 TATACTATA-ACACATATAATATATATA
1 TATA-TATATATA-ATATAATATATATA
100344 TATATATATATA
1 TATATATATATA
100356 TTCTAAAAAC
Statistics
Matches: 47, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
24 3 0.06
25 13 0.28
26 12 0.26
27 19 0.40
ACGTcount: A:0.48, C:0.06, G:0.01, T:0.45
Consensus pattern (26 bp):
TATATATATATAATATAATATATATA
Found at i:100355 original size:43 final size:43
Alignment explanation
Indices: 100272--100356 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 43
100262 CCTATTATAA
* * * * * *
100272 TATATAATATAATATATATACTCTATATATTTTTAAATATATG
1 TATATAATATAACACATATAATATATATATATATAAATATATG
* *
100315 TATATACTATAACACATATAATATATATATATATATATATAT
1 TATATAATATAACACATATAATATATATATATATAAATATAT
100357 TCTAAAAACT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.47, C:0.06, G:0.01, T:0.46
Consensus pattern (43 bp):
TATATAATATAACACATATAATATATATATATATAAATATATG
Found at i:109475 original size:24 final size:25
Alignment explanation
Indices: 109430--109484 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
109420 TTAGCCACTG
**
109430 TTTTTATTTATAATTTGTTCCTTAT
1 TTTTTATTTATAATTTAATCCTTAT
* *
109455 TTTTTATTT-TATTTTAATCCTTCT
1 TTTTTATTTATAATTTAATCCTTAT
109479 TTTTTA
1 TTTTTA
109485 AATTATTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (25 bp):
TTTTTATTTATAATTTAATCCTTAT
Found at i:109724 original size:14 final size:14
Alignment explanation
Indices: 109705--109746 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
109695 ATGTTATTCT
*
109705 AATTTCAGCCTTTA
1 AATTTCAGCATTTA
109719 AATTTCAGCATTTA
1 AATTTCAGCATTTA
*
109733 CATTTCAGTCATTT
1 AATTTCAG-CATTT
109747 GATTTTTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 20 0.80
15 5 0.20
ACGTcount: A:0.29, C:0.19, G:0.07, T:0.45
Consensus pattern (14 bp):
AATTTCAGCATTTA
Found at i:116880 original size:32 final size:31
Alignment explanation
Indices: 116838--116916 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
116828 ATTTATATTC
* * *
116838 AAAAAAAGAGAAAAAAGAAGAAACATAGAAG
1 AAAAAAAGAGAAAAAACAACAAAAATAGAAG
*
116869 AGAAAAAAGAGATAAAACAACAAAAATAGAAG
1 A-AAAAAAGAGAAAAAACAACAAAAATAGAAG
*
116901 AAAAAGAAAAGAAAAA
1 AAAAA-AAGAGAAAAA
116917 GAAAAATAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 5 0.12
32 35 0.88
ACGTcount: A:0.76, C:0.04, G:0.16, T:0.04
Consensus pattern (31 bp):
AAAAAAAGAGAAAAAACAACAAAAATAGAAG
Found at i:116904 original size:11 final size:10
Alignment explanation
Indices: 116839--116952 Score: 62
Period size: 10 Copynumber: 11.3 Consensus size: 10
116829 TTTATATTCA
116839 AAAAAAG-AG
1 AAAAAAGAAG
116848 AAAAAAGAAG
1 AAAAAAGAAG
*
116858 AAACATAGAAG
1 AAA-AAAGAAG
116869 AGAAAAA-AGAG
1 A-AAAAAGA-AG
* * *
116880 ATAAAACAAC
1 AAAAAAGAAG
116890 AAAAATAGAAG
1 AAAAA-AGAAG
116901 -AAAAAGAA-
1 AAAAAAGAAG
*
116909 AAGAAA-AAG
1 AAAAAAGAAG
116918 AAAAATAGAA-
1 AAAAA-AGAAG
116928 AAAAGGAA-AAG
1 AAAA--AAGAAG
116939 AAGAAAAGAAG
1 AA-AAAAGAAG
116950 AAA
1 AAA
116953 GAAAATAGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 29
0.68 0.08 0.24
Matches are distributed among these distances:
8 2 0.02
9 19 0.23
10 29 0.36
11 26 0.32
12 5 0.06
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:116904 original size:28 final size:28
Alignment explanation
Indices: 116839--116940 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 28
116829 TTTATATTCA
* *
116839 AAAAAAGAGAAAAAAGAAGAAACATAGAAGAG
1 AAAAAAGAG--AAAAGAA-AAACA-AAAATAG
* *
116871 AAAAAAGAGATAA-AACAACAAAAATAG
1 AAAAAAGAGAAAAGAAAAACAAAAATAG
*
116898 AAGAAAA-AGAAAAGAAAAAGAAAAATAG
1 AA-AAAAGAGAAAAGAAAAACAAAAATAG
116926 AAAAAAG-GAAAAGAA
1 AAAAAAGAGAAAAGAA
116941 GAAAAGAAGA
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
27 24 0.40
28 22 0.37
29 2 0.03
30 3 0.05
32 9 0.15
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (28 bp):
AAAAAAGAGAAAAGAAAAACAAAAATAG
Found at i:116929 original size:8 final size:7
Alignment explanation
Indices: 116907--116957 Score: 52
Period size: 8 Copynumber: 7.3 Consensus size: 7
116897 GAAGAAAAAG
116907 AAAAG-A
1 AAAAGAA
116913 AAAAGAA
1 AAAAGAA
116920 AAATAGAA
1 AAA-AGAA
*
116928 AAAAG-G
1 AAAAGAA
116934 AAAAGAA
1 AAAAGAA
116941 GAAAAGAA
1 -AAAAGAA
*
116949 GAAAGAA
1 AAAAGAA
116956 AA
1 AA
116958 TAGATCAAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
6 10 0.27
7 13 0.35
8 14 0.38
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (7 bp):
AAAAGAA
Found at i:119589 original size:19 final size:21
Alignment explanation
Indices: 119565--119616 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
119555 CGGCCAAGAG
*
119565 CATGTATCTTCA-TTAAAA-T
1 CATGTATTTTCATTTAAAAGT
119584 CATGTATTTTCATTTAAAAGT
1 CATGTATTTTCATTTAAAAGT
119605 CATGTATTTTCA
1 CATGTATTTTCA
119617 AAGGGTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 13 0.43
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAGT
Found at i:123690 original size:19 final size:21
Alignment explanation
Indices: 123666--123717 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
123656 CGGCCAAGAG
*
123666 CATGTATCTTCA-TTAAAA-T
1 CATGTATTTTCATTTAAAAGT
123685 CATGTATTTTCATTTAAAAGT
1 CATGTATTTTCATTTAAAAGT
123706 CATGTATTTTCA
1 CATGTATTTTCA
123718 AAGGGTTTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 6 0.20
21 13 0.43
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAGT
Found at i:124674 original size:25 final size:25
Alignment explanation
Indices: 124646--124705 Score: 111
Period size: 25 Copynumber: 2.4 Consensus size: 25
124636 ATTATGCTAG
*
124646 AGTTTATTAGTCTTTTATAACTATT
1 AGTTCATTAGTCTTTTATAACTATT
124671 AGTTCATTAGTCTTTTATAACTATT
1 AGTTCATTAGTCTTTTATAACTATT
124696 AGTTCATTAG
1 AGTTCATTAG
124706 GTCACTTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (25 bp):
AGTTCATTAGTCTTTTATAACTATT
Found at i:128557 original size:22 final size:22
Alignment explanation
Indices: 128532--128575 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
128522 AAAATCACTT
128532 CATTGCTCAATAAAA-ACTTCAA
1 CATTGC-CAATAAAACACTTCAA
*
128554 CATTTCCAATAAAACACTTCAA
1 CATTGCCAATAAAACACTTCAA
128576 TTCCCTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.45, C:0.25, G:0.02, T:0.27
Consensus pattern (22 bp):
CATTGCCAATAAAACACTTCAA
Found at i:145336 original size:20 final size:20
Alignment explanation
Indices: 145313--145352 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
145303 TATTGGTACT
*
145313 GACCCTTGAGTATCGATACC
1 GACCCCTGAGTATCGATACC
*
145333 GACCCCTGGGTATCGATACC
1 GACCCCTGAGTATCGATACC
145353 ATTTTTAGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.23, C:0.33, G:0.23, T:0.23
Consensus pattern (20 bp):
GACCCCTGAGTATCGATACC
Found at i:145501 original size:20 final size:20
Alignment explanation
Indices: 145476--145525 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
145466 AATGATCTTG
*
145476 GTATCGATACC-ACCCAATTA
1 GTATCGATACCGACCCAA-CA
* *
145496 GTATCGAGACCGACCCTACA
1 GTATCGATACCGACCCAACA
145516 GTATCGATAC
1 GTATCGATAC
145526 TCTATGAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (20 bp):
GTATCGATACCGACCCAACA
Found at i:146272 original size:15 final size:16
Alignment explanation
Indices: 146252--146281 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
146242 ATATTTTACC
146252 CTTTTGGTC-ACTCTA
1 CTTTTGGTCAACTCTA
146267 CTTTTGGTCAACTCT
1 CTTTTGGTCAACTCT
146282 CATAATCCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47
Consensus pattern (16 bp):
CTTTTGGTCAACTCTA
Found at i:148646 original size:28 final size:27
Alignment explanation
Indices: 148615--148677 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
148605 AGTTGATACA
*
148615 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
148643 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
148671 ATATTTT
1 ATATTTT
148678 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:148778 original size:16 final size:18
Alignment explanation
Indices: 148757--148790 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
148747 ATCTCTTATT
148757 AAAAATA-AAAT-ATTCA
1 AAAAATATAAATGATTCA
148773 AAAAATATAAATGATTCA
1 AAAAATATAAATGATTCA
148791 TACATTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATATAAATGATTCA
Found at i:148937 original size:21 final size:21
Alignment explanation
Indices: 148913--148955 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
148903 TATTACCTTA
148913 AATTGAAGTATTTTAAAATTT
1 AATTGAAGTATTTTAAAATTT
*
148934 AATTGAAGTATTTTAGAATTT
1 AATTGAAGTATTTTAAAATTT
148955 A
1 A
148956 GGGTTTAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.47
Consensus pattern (21 bp):
AATTGAAGTATTTTAAAATTT
Found at i:150801 original size:84 final size:82
Alignment explanation
Indices: 150698--150958 Score: 294
Period size: 84 Copynumber: 3.2 Consensus size: 82
150688 TTTTTTTCAT
* ** * * *
150698 AGATAGCCCTTCTTTCCTTGAGCTATGCTGTAAATGATGTGCCTTGAAGTTGAGCGTAGTCGAAC
1 AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCTTGAAGCTGAGTGTAGTCGAAC
150763 TCAAAGGTCTTCTGGTGAC
66 TCAAAGGTCTT-TGGTG-C
* * * **
150782 AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGTCGTTG-AGCCGAGTGTAACCGAA
1 AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTG-CCTTGAAGCTGAGTGTAGTCGAA
* *
150846 CTCAAATGTCTTTGTTGGC
65 CTCAAAGGTCTTTGGT-GC
* * * *
150865 AGATAACCTTTTTAGCCTTGAGTTATGCTGTAAATGATGTTCCCTCGAAGCTGAGTGTAGTCGAA
1 AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATG-TGCCTTGAAGCTGAGTGTAGTCGAA
*
150930 CTCGAAGGTCTTT-G-GC
65 CTCAAAGGTCTTTGGTGC
150946 AGATAACCCTTCT
1 AGATAACCCTTCT
150959 CGATAGGGGT
Statistics
Matches: 146, Mismatches: 27, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
81 13 0.09
83 43 0.29
84 86 0.59
85 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (82 bp):
AGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCTTGAAGCTGAGTGTAGTCGAAC
TCAAAGGTCTTTGGTGC
Found at i:151228 original size:19 final size:19
Alignment explanation
Indices: 151196--151264 Score: 74
Period size: 19 Copynumber: 3.8 Consensus size: 19
151186 TTCATTGAAA
151196 AACCGAAAAA-CCGAACCG
1 AACCGAAAAACCCGAACCG
151214 AACCGAAAAACCCGAACCG
1 AACCGAAAAACCCGAACCG
* *
151233 TTA---AAAAACCTGAACCG
1 -AACCGAAAAACCCGAACCG
*
151250 AACCGAAAAAACCGA
1 AACCGAAAAACCCGA
151265 TTTCGGTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
16 1 0.02
17 13 0.32
18 10 0.24
19 16 0.39
20 1 0.02
ACGTcount: A:0.51, C:0.30, G:0.14, T:0.04
Consensus pattern (19 bp):
AACCGAAAAACCCGAACCG
Found at i:151264 original size:14 final size:14
Alignment explanation
Indices: 151209--151251 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
151199 CGAAAAACCG
151209 AACCGAACCGAAAA
1 AACCGAACCGAAAA
*
151223 ACCCGAACCGTTAAAA
1 AACCGAACCG--AAAA
151239 AACCTGAACCGAA
1 AACC-GAACCGAA
151252 CCGAAAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 9 0.38
15 2 0.08
16 7 0.29
17 6 0.25
ACGTcount: A:0.49, C:0.30, G:0.14, T:0.07
Consensus pattern (14 bp):
AACCGAACCGAAAA
Found at i:151669 original size:165 final size:165
Alignment explanation
Indices: 151391--152287 Score: 865
Period size: 165 Copynumber: 5.4 Consensus size: 165
151381 TACACCCCTA
* *
151391 CTTCTCGACTTAAGCTATGCTACAAAGGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
* *
151456 C-TTTGGTTGACAGATAACCCTTCTATCCTTGAGTTATGATGT-AAATGATATGCCCTCGGAGCT
66 CTTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCT-TAAAATGATATGCCCTCGGAGCT
151519 GAGTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCC
129 GAGTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCC
* * *
151556 CATCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGTTGAGCGAAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
151621 CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGA
66 CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGA
151686 GTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCC
131 GTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCC
* *
151721 CTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGAAGTCGAACTCGAAGGT
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
**
151786 CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGC-TATAAATGATATG-CCTTAGAGCTG
66 CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTA-AAATGATATGCCCTCGGAGCTG
* * * * * *
151849 AGCGTAGTCAAACTCGAAGGTCTTTAGTTGGCAGATAACC
130 AGTGTAATCGAACCCGAGGGTC--T--TTGGCAGATAGCC
* * * *
151889 CTTCTTGACTTAAGTTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGT
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
* * * * * * * ** * *
151954 C-TTT--TAACATATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGA
66 CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGA
* * * ** * *
152015 GCGTAGTCAAACTTGAAGGTCTTTTGGTGACAGATAACC
131 GTGTAATCGAACCCGAGGGTC-TTT-G-G-CAGATAGCC
* * * * * * * * * * * *
152054 CTTCTAGCCCTGAGTTATGTTGTAAATGATGTG-CTCTCGAAGTTGAGTGTAA-TCGAACTTGAG
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCT-TAG-AGCTGAGCG-AAGTCGAACTCGAA
* * * * * * *
152117 GGTC-TTT-G-G-CAGATAGCCCTTCTCGACTTAAGCTATGC-TACAAATGATATG-TCTTGGAG
63 GGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTA-AAATGATATGCCCTCGGAG
* * * * *
152176 CTGAGTGTAGTCGAACTCGAAGGTCTTTGTTTCCAGATAACC
127 CTGAGTGTAATCGAACCCGAGGGTCTTTG---GCAGATAGCC
* * * * * * *
152218 CTTGTTGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAA-TCGAACTCGAAG
1 CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAG-AGCTGAGCG-AAGTCGAACTCGAAG
152282 GTCTTT
64 GTCTTT
152288 GGCAGATAGC
Statistics
Matches: 645, Mismatches: 67, Indels: 40
0.86 0.09 0.05
Matches are distributed among these distances:
162 2 0.00
163 2 0.00
164 101 0.16
165 434 0.67
166 28 0.04
167 4 0.01
168 74 0.11
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (165 bp):
CTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
CTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGA
GTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCC
Found at i:151873 original size:249 final size:247
Alignment explanation
Indices: 151391--152287 Score: 857
Period size: 249 Copynumber: 3.6 Consensus size: 247
151381 TACACCCCTA
* * * * * * *
151391 CTTCTCGACTTAAGCTATGC-TACAAAGGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGG
1 CTTCTAGACTTAAGTTATGCTTA-AAATGATATGCCTTGGAGCTGAGTGTAGTCGAACTCGAAGG
* * * * * * * *
151455 TCTTTGGTTGACAGATAACCCTTCTAT-CCTTGAGTTATGATGTAAATGATATGCCCTCGGAGCT
65 TC--T--TTGACAGATAGCCCTTCT-TGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCT
* * * * * * * * * * **
151519 GAGTGTAA-TCGAACCCGAGGGTC-TTT-G-G-CAGATAGCCCATCTCGACTTAAGCTATGCTGC
124 GAGCG-AAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTGAGTTATGCTAT
* *
151579 AAATGATGTGCCTTGGAGTTGAGCGAAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACC
188 AAATGATGTGCCTTAGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTG-CAGATAACC
* * * * * *
151640 CTTCTAGCCTTGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGAGTGTAATCGAACCCGAGGG
1 CTTCTAGACTTAAGTTATGCTTAAAATGATATG-CCTTGGAGCTGAGTGTAGTCGAACTCGAAGG
*
151705 TCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGA
65 TCTTTGACAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGA
*
151770 AGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTATAAATGAT
130 AGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTGAGTTATGCTATAAATGAT
* * * * *
151835 ATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGTCTTTAGTTGGCAGATAACC
195 GTGCCTTAGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGGT-GCAGATAACC
* ** * * * *
151889 CTTCTTGACTTAAGTTATGCTGCAAATGATGTGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGT
1 CTTCTAGACTTAAGTTATGCTTAAAATGATATGCCTTGGAGCTGAGTGTAGTCGAACTCGAAGGT
* * * *
151954 CTTTTAACATATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGT
66 C-TTTGACAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGA
* * * *
152019 AGTCAAACTTGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTGAGTTATGTTGTAAATGAT
130 AGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTGAGTTATGCTATAAATGAT
* * * * * *
152084 GTG-CTCTCGAAGTTGAGTGTAATCGAACTTGAGGGTC-TTT-G-GCAGATAGCC
195 GTGCCT-TAG-AGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGCAGATAACC
* * *
152135 CTTCTCGACTTAAGCTATGC-TACAAATGATATGTCTTGGAGCTGAGTGTAGTCGAACTCGAAGG
1 CTTCTAGACTTAAGTTATGCTTA-AAATGATATGCCTTGGAGCTGAGTGTAGTCGAACTCGAAGG
* * * * * * *
152199 TCTTTGTTTCCAGATAACCCTTGTTGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGA
65 TCTTTG---ACAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGA
*
152264 GTGTAA-TCGAACTCGAAGGTCTTT
126 GCG-AAGTCGAACTCGAAGGTCTTT
152288 GGCAGATAGC
Statistics
Matches: 533, Mismatches: 97, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
244 2 0.00
245 30 0.06
246 104 0.20
247 1 0.00
248 66 0.12
249 279 0.52
250 51 0.10
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (247 bp):
CTTCTAGACTTAAGTTATGCTTAAAATGATATGCCTTGGAGCTGAGTGTAGTCGAACTCGAAGGT
CTTTGACAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGAA
GTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTGAGTTATGCTATAAATGATG
TGCCTTAGAGTTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGCAGATAACC
Found at i:152176 original size:414 final size:412
Alignment explanation
Indices: 151391--152325 Score: 1243
Period size: 414 Copynumber: 2.3 Consensus size: 412
151381 TACACCCCTA
* * * *
151391 CTTCTCGACTTAAGCTATGCTACAAAGGATGTGCCTTAGAGCTGAGCGAAGTCGAACTCGAAGGT
1 CTTCTAGACTTAAGTTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGT
* * * * *
151456 CTTTGGTTGACAGATAACCCTTCTAT-CCTTGAGTTATGATGTAAATGATATGCCCTCGGAGCTG
66 CTTT-GTTGGCAGATAACCCTTCT-TGACTTAAGTTATGCTGTAAATGATATGCCCTCAGAGCTG
* * * **
151520 AGTGTAATCGAACCCGAGGGTCTTTGGCAGATAGCCCATCTCGACTTAAGCTATGCTGCAAATGA
129 AGCGTAATCAAACCCGAAGGTCTTTAACAGATAGCCCATCTCGACTTAAGCTATGCTGCAAATGA
* * *
151585 TGTGCCTTGGAGTTGAGCGAAGTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCT
194 TGTGCCTTGGAGCTGAGCGAAGTCAAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCC
*
151650 TGAGTTATGCTTAAAATGATATGCCCTCGGAGCTGAGTGTAATCGAACCCGAGGGTCTTTGGCAG
259 TGAGTTATGCTTAAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACCCGAGGGTCTTTGGCAG
* * *
151715 ATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGAAGTCGAACTC
324 ATAGCCCTTCTCGACTTAAGCTATGCTACAAATGATATGCCTTGGAGCTGAGCGAAGTCGAACTC
151780 GAAGGTCTTTTGGTGACAGATAACC
389 GAAGGTC-TTTGGTGACAGATAACC
* * * * *
151805 CTTCTAGCCTTGAGTTATGCTATAAATGATATGCCTTAGAGCTGAGCGTAGTCAAACTCGAAGGT
1 CTTCTAGACTTAAGTTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGT
* * *
151870 CTTTAGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGCAAATGATGTG-CCTTAGAGCTGA
66 CTTT-GTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGTAAATGATATGCCCTCAGAGCTGA
* * * *
151934 GCGTAGTCAAACTCGAAGGTCTTTTAACATATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGA
130 GCGTAATCAAACCCGAAGGTC-TTTAACAGATAGCCCATCTCGACTTAAGCTATGCTGCAAATGA
* *
151999 TGTGCCTTGGAGCTGAGCGTAGTCAAACTTGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCC
194 TGTGCCTTGGAGCTGAGCGAAGTCAAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCC
* * * * **
152064 TGAGTTATG-TTGTAAATGATGTGCTCTCGAAGTTGAGTGTAATCGAACTTGAGGGTCTTTGGCA
259 TGAGTTATGCTT-AAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACCCGAGGGTCTTTGGCA
* * *
152128 GATAGCCCTTCTCGACTTAAGCTATGCTACAAATGATATGTCTTGGAGCTGAGTGTAGTCGAACT
323 GATAGCCCTTCTCGACTTAAGCTATGCTACAAATGATATGCCTTGGAGCTGAGCGAAGTCGAACT
* **
152193 CGAAGGTCTTTGTTTCCAGATAACC
388 CGAAGGTCTTTGGTGACAGATAACC
* * * * * * * *
152218 CTTGTTGACTTAAGTTATGTTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGG
1 CTTCTAGACTTAAGTTATGCTACAAATGATGTGCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGG
* * *
152283 TC--T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGTAAAT
65 TCTTTGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGTAAAT
152326 AGTTTCTTTA
Statistics
Matches: 452, Mismatches: 65, Indels: 12
0.85 0.12 0.02
Matches are distributed among these distances:
410 36 0.08
412 1 0.00
413 72 0.16
414 343 0.76
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.30
Consensus pattern (412 bp):
CTTCTAGACTTAAGTTATGCTACAAATGATGTGCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGT
CTTTGTTGGCAGATAACCCTTCTTGACTTAAGTTATGCTGTAAATGATATGCCCTCAGAGCTGAG
CGTAATCAAACCCGAAGGTCTTTAACAGATAGCCCATCTCGACTTAAGCTATGCTGCAAATGATG
TGCCTTGGAGCTGAGCGAAGTCAAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCCTG
AGTTATGCTTAAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACCCGAGGGTCTTTGGCAGAT
AGCCCTTCTCGACTTAAGCTATGCTACAAATGATATGCCTTGGAGCTGAGCGAAGTCGAACTCGA
AGGTCTTTGGTGACAGATAACC
Found at i:153551 original size:83 final size:86
Alignment explanation
Indices: 153447--153666 Score: 261
Period size: 95 Copynumber: 2.5 Consensus size: 86
153437 GGCTAGCTGG
*
153447 ATCCATAAAGCCGGGGTGTTTAACCAATTGCTCTAGAGGGACAGC-TTA-ATA-TATAAACACCT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAGCTTTATATAGTATAAACACCT
* *
153509 TTATCAGGTTAGCTGAATCTT
66 TTATCAGGCTAGCTGAATATT
153530 ATCCATAAAGCCGGGGCGTTTAACCAATTGC-CTTAGAGGGATAGCTCAAGCTTTATTGTATAGT
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTC-TAGAGGG--A---C-AGCTTTA---TATAGT
**
153594 ATAATTACCTTTATCAGGCTAGCTGAATATT
56 ATAAACACCTTTATCAGGCTAGCTGAATATT
*
153625 ATCCTTAAAG-CGGGGCGTTTAACCAATTGCTCTAGAGGGACA
1 ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACA
153667 ACTCAAGCTT
Statistics
Matches: 117, Mismatches: 6, Indels: 23
0.80 0.04 0.16
Matches are distributed among these distances:
82 1 0.01
83 37 0.32
85 1 0.01
88 2 0.02
89 4 0.03
90 3 0.03
92 1 0.01
94 30 0.26
95 38 0.32
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (86 bp):
ATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGGACAGCTTTATATAGTATAAACACCT
TTATCAGGCTAGCTGAATATT
Found at i:153692 original size:95 final size:96
Alignment explanation
Indices: 153495--153693 Score: 296
Period size: 94 Copynumber: 2.1 Consensus size: 96
153485 GGACAGCTTA
* * *
153495 ATATATAAACACCTTTATCAGGTTAGCTGAATCTTATCCATAAAGCCGGGGCGTTTAACCAATTG
1 ATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTG
* *
153560 CCTTAGAGGGATAGCTCAAGCTTTATTGTAT
66 CCTTAGAGGGACAACTCAAGCTTTATTGTAT
* * *
153591 A-GTATAATTACCTTTATCAGGCTAGCTGAATATTATCCTTAAAG-CGGGGCGTTTAACCAATTG
1 ATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTG
153654 -CTCTAGAGGGACAACTCAAGCTTTATTGTAT
66 CCT-TAGAGGGACAACTCAAGCTTTATTGTAT
153685 ATATATAAT
1 ATATATAAT
153694 ATTATAATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
93 2 0.02
94 46 0.50
95 43 0.47
96 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (96 bp):
ATATATAATCACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTG
CCTTAGAGGGACAACTCAAGCTTTATTGTAT
Found at i:158546 original size:25 final size:24
Alignment explanation
Indices: 158486--158546 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
158476 TGTTTGTTAA
*
158486 TAAAATAATATACATATATAATGTG
1 TAAAA-AATATACATAAATAATGTG
* *
158511 TAAATATATATATATAAATATATGTG
1 TAAA-AAATATACATAAATA-ATGTG
158537 TAAAAAATAT
1 TAAAAAATAT
158547 GGACGAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
25 20 0.67
26 10 0.33
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.38
Consensus pattern (24 bp):
TAAAAAATATACATAAATAATGTG
Found at i:159223 original size:18 final size:17
Alignment explanation
Indices: 159200--159234 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
159190 TTTTTATTAT
*
159200 ATATTATAGTATTTTTTA
1 ATATTATA-TAATTTTTA
159218 ATATTATATAATTTTTA
1 ATATTATATAATTTTTA
159235 TTCTATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
ATATTATATAATTTTTA
Found at i:159331 original size:26 final size:27
Alignment explanation
Indices: 159302--159359 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
159292 TGTTCATGTT
* *
159302 TAAAAGTT-TTAATTAAAAAT-AACATA
1 TAAAA-TTATTAAATAAAAATAAAAATA
159328 TAAAATTATTAAATAAAAATAAAAATA
1 TAAAATTATTAAATAAAAATAAAAATA
159355 TAAAA
1 TAAAA
159360 ATAATATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.07
26 16 0.57
27 10 0.36
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (27 bp):
TAAAATTATTAAATAAAAATAAAAATA
Found at i:159368 original size:19 final size:19
Alignment explanation
Indices: 159315--159382 Score: 59
Period size: 19 Copynumber: 3.5 Consensus size: 19
159305 AAGTTTTAAT
*
159315 TAAAAATAACATATAAAATTA
1 TAAAAAT-A-ATATAAAAATA
159336 TTAAATAA-AA-ATAAAAATA
1 -TAAA-AATAATATAAAAATA
* *
159355 TAAAAATAATATAAATATT
1 TAAAAATAATATAAAAATA
159374 TAAAAATAA
1 TAAAAATAA
159383 AAATAATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
17 2 0.05
18 6 0.15
19 24 0.60
20 1 0.03
21 1 0.03
22 4 0.10
23 2 0.05
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAAATAATATAAAAATA
Found at i:159381 original size:33 final size:35
Alignment explanation
Indices: 159341--159409 Score: 106
Period size: 33 Copynumber: 2.0 Consensus size: 35
159331 AATTATTAAA
159341 TAAAAATAAAAAT-ATAAAAAT-AATATAAATATT
1 TAAAAATAAAAATAATAAAAATCAATATAAATATT
* *
159374 TAAAAATAAAAATAATAAAAATCTATCTAAATATT
1 TAAAAATAAAAATAATAAAAATCAATATAAATATT
159409 T
1 T
159410 TTTTTATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 13 0.41
34 8 0.25
35 11 0.34
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (35 bp):
TAAAAATAAAAATAATAAAAATCAATATAAATATT
Found at i:159390 original size:19 final size:20
Alignment explanation
Indices: 159338--159388 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
159328 TAAAATTATT
*
159338 AAATAAAAATAAAAATATAA
1 AAATAAAAATAAATATATAA
* *
159358 AAAT-AATATAAATATTTAA
1 AAATAAAAATAAATATATAA
159377 AAATAAAAATAA
1 AAATAAAAATAA
159389 TAAAAATCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (20 bp):
AAATAAAAATAAATATATAA
Found at i:159406 original size:25 final size:25
Alignment explanation
Indices: 159339--159395 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
159329 AAAATTATTA
*
159339 AATAAAAATA-A-AAATATAAAAAT
1 AATAAAAATATATAAAAATAAAAAT
* *
159362 AATATAAATATTTAAAAATAAAAAT
1 AATAAAAATATATAAAAATAAAAAT
159387 AATAAAAAT
1 AATAAAAAT
159396 CTATCTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.32
25 19 0.68
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (25 bp):
AATAAAAATATATAAAAATAAAAAT
Found at i:170643 original size:2 final size:2
Alignment explanation
Indices: 170636--170674 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
170626 TCAATCTACA
170636 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
170675 ATTTACGACA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:170795 original size:85 final size:84
Alignment explanation
Indices: 170694--170859 Score: 219
Period size: 85 Copynumber: 2.0 Consensus size: 84
170684 ATACAATCAC
* * *
170694 GACACACGAATGTGTGTCATCTT-TTCTAATGACGTGTGCTTCAATGACACACAATGTA-AGTCA
1 GACACACAAATGTGTGTCATCTTATT-T-ATGACGGGGGCTTCAATGACACACAATG-AGAGTCA
*
170757 TAAATGCGTGTCATAAATTTAT
63 TAAATGCGCGTCATAAATTTAT
* * *
170779 GACACACAAATGTGTGTCGTCTTCATTTATGACGGGGGCTTCAATGACGCGCAATGAGAGTCATA
1 GACACACAAATGTGTGTCATCTT-ATTTATGACGGGGGCTTCAATGACACACAATGAGAGTCATA
170844 AATGCGCGTCATAAAT
65 AATGCGCGTCATAAAT
170860 GTGTGTCATA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
84 1 0.01
85 67 0.94
86 1 0.01
87 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (84 bp):
GACACACAAATGTGTGTCATCTTATTTATGACGGGGGCTTCAATGACACACAATGAGAGTCATAA
ATGCGCGTCATAAATTTAT
Found at i:170854 original size:13 final size:13
Alignment explanation
Indices: 170838--170885 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
170828 CGCAATGAGA
170838 GTCATAAATGCGC
1 GTCATAAATGCGC
* *
170851 GTCATAAATGTGT
1 GTCATAAATGCGC
170864 GTCATAAATGCGC
1 GTCATAAATGCGC
170877 GTCATAAAT
1 GTCATAAAT
170886 TTATGACGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (13 bp):
GTCATAAATGCGC
Found at i:170860 original size:26 final size:26
Alignment explanation
Indices: 170831--170885 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
170821 AATGACGCGC
170831 AATGAGAGTCATAAATGCGCGTCATA
1 AATGAGAGTCATAAATGCGCGTCATA
* *
170857 AATGTGTGTCATAAATGCGCGTCATA
1 AATGAGAGTCATAAATGCGCGTCATA
170883 AAT
1 AAT
170886 TTATGACGCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (26 bp):
AATGAGAGTCATAAATGCGCGTCATA
Found at i:174840 original size:23 final size:23
Alignment explanation
Indices: 174814--174889 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
174804 TCCCGAAAGA
* * *
174814 CCACATAGGTTTGTACCAAAGTG
1 CCACATAGGTTGGCACCGAAGTG
*
174837 CCACATAGGTTGGCACTGAAGTG
1 CCACATAGGTTGGCACCGAAGTG
*
174860 CCACATAGGTTGGCACCGAAGTC
1 CCACATAGGTTGGCACCGAAGTG
174883 CCACATA
1 CCACATA
174890 TTTATCCCGA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.24, T:0.21
Consensus pattern (23 bp):
CCACATAGGTTGGCACCGAAGTG
Found at i:175568 original size:54 final size:53
Alignment explanation
Indices: 175470--175591 Score: 154
Period size: 54 Copynumber: 2.3 Consensus size: 53
175460 CTTCCCTTCA
* * *
175470 AGGGTATCGATGCCTCCTCATGGTACCGATACCAAAATAACATTCGATGTTTCG
1 AGGGTATCGATACCTCATCAAGGTACCGATACCAAAATAACATTCGATGTTT-G
** ** *
175524 AGGGTATCGATACCTCATCAAGGTACCGATACCAATCTGGCATTCGATGTTTT
1 AGGGTATCGATACCTCATCAAGGTACCGATACCAAAATAACATTCGATGTTTG
175577 AGGGGTATCGATACC
1 A-GGGTATCGATACC
175592 ATCCTACAAG
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
53 1 0.02
54 58 0.98
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (53 bp):
AGGGTATCGATACCTCATCAAGGTACCGATACCAAAATAACATTCGATGTTTG
Found at i:184408 original size:32 final size:32
Alignment explanation
Indices: 184349--184533 Score: 149
Period size: 32 Copynumber: 5.8 Consensus size: 32
184339 ACTACAACTG
* * *
184349 TTATTCATAATCTAAATGCAA-ATCTGACACTA
1 TTATGCATTATCTAAATACAACA-CTGACACTA
* * * * *
184381 CTATGCATTATTTGAATGCAACACTGACACTG
1 TTATGCATTATCTAAATACAACACTGACACTA
* * *
184413 TTGTTGCATTATCTAAATACAACACTAACATTGA
1 TT-ATGCATTATCTAAATACAACACTGACACT-A
* * *
184447 -TGTGCATTATTTAAATACAACCCTGACACTA
1 TTATGCATTATCTAAATACAACACTGACACTA
* * * * *
184478 TTTTGCATTATATAAATGCAACATTGACACTG
1 TTATGCATTATCTAAATACAACACTGACACTA
*
184510 TTATGCATTATCTGAATACAACAC
1 TTATGCATTATCTAAATACAACAC
184534 ACTGCTAGTA
Statistics
Matches: 119, Mismatches: 30, Indels: 8
0.76 0.19 0.05
Matches are distributed among these distances:
31 1 0.01
32 93 0.78
33 25 0.21
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (32 bp):
TTATGCATTATCTAAATACAACACTGACACTA
Found at i:184517 original size:64 final size:65
Alignment explanation
Indices: 184361--184533 Score: 199
Period size: 64 Copynumber: 2.7 Consensus size: 65
184351 ATTCATAATC
* *
184361 TAAATGCAA-ATCTGACACT-ACTATGCATTATTTGAATGCAACACTGACACTGTTGTTGCATTA
1 TAAATGCAACAT-TGACACTGA-TATGCATTATTTGAATACAACACTGACACTATTGTTGCATTA
*
184424 TC
64 TA
* * * * * * *
184426 TAAATACAACACTAACATTGATGTGCATTATTTAAATACAACCCTGACACTATT-TTGCATTATA
1 TAAATGCAACATTGACACTGATATGCATTATTTGAATACAACACTGACACTATTGTTGCATTATA
* *
184490 TAAATGCAACATTGACACTGTTATGCATTATCTGAATACAACAC
1 TAAATGCAACATTGACACTGATATGCATTATTTGAATACAACAC
184534 ACTGCTAGTA
Statistics
Matches: 87, Mismatches: 19, Indels: 5
0.78 0.17 0.05
Matches are distributed among these distances:
64 44 0.51
65 41 0.47
66 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (65 bp):
TAAATGCAACATTGACACTGATATGCATTATTTGAATACAACACTGACACTATTGTTGCATTATA
Found at i:186091 original size:20 final size:21
Alignment explanation
Indices: 186066--186130 Score: 69
Period size: 20 Copynumber: 3.0 Consensus size: 21
186056 ATAGTGACCA
186066 GAATAGTAACCGGCGATAGT-
1 GAATAGTAACCGGCGATAGTC
* *
186086 GAATAGTGACCGGCGATTGTC
1 GAATAGTAACCGGCGATAGTC
* *
186107 GGAATAGTTACCGGCTGGTAGTC
1 -GAATAGTAACCGGC-GATAGTC
186130 G
1 G
186131 GCCGGTGACT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 18 0.49
22 14 0.38
23 5 0.14
ACGTcount: A:0.26, C:0.17, G:0.34, T:0.23
Consensus pattern (21 bp):
GAATAGTAACCGGCGATAGTC
Found at i:186217 original size:17 final size:15
Alignment explanation
Indices: 186186--186215 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
186176 AAGAGCTTCT
186186 CTCTCTAAGGAGAGA
1 CTCTCTAAGGAGAGA
186201 CTCTCTAAGGAGAGA
1 CTCTCTAAGGAGAGA
186216 GAAGCAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.27, T:0.20
Consensus pattern (15 bp):
CTCTCTAAGGAGAGA
Found at i:191111 original size:17 final size:17
Alignment explanation
Indices: 191089--191135 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
191079 TAAAAAAAAC
191089 TTGCATAATACATGTCA
1 TTGCATAATACATGTCA
*
191106 TTGCATCATACA--TCA
1 TTGCATAATACATGTCA
*
191121 TTTCATACATACATG
1 TTGCATA-ATACATG
191136 ATACATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 8 0.33
16 5 0.21
17 11 0.46
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (17 bp):
TTGCATAATACATGTCA
Found at i:191342 original size:62 final size:62
Alignment explanation
Indices: 191245--191551 Score: 300
Period size: 62 Copynumber: 5.0 Consensus size: 62
191235 TCTTGTTTCC
* * * * *
191245 TAGAGTCAAT-ATTTGACTCCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGGCTCTTTAG
1 TAGAGTCAATCA-TTGACTTCCTCGTGAAGAGAAGTCAACATTTATTATTTTTGACTCCTCAG
* * * *
191307 TAGAGTAAATCCTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTTTGAATCCTCAG
1 TAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTATTATTTTTGACTCCTCAG
* * * * *
191369 TAGAGTCAAT-ATTTAGC-TCTCTCGTGAAGATAAGTCAACATTTTTTATTTCTAACTCCTCAG
1 TAGAGTCAATCATTGA-CTTC-CTCGTGAAGAGAAGTCAACATTTATTATTTTTGACTCCTCAG
* * ** * *
191431 TAGAGTCAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTATTATTCCTGACTCCCCTG
1 TAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTATTATTTTTGACTCCTCAG
* ** * * *
191493 TAGAGTCAAAT-TTTTTCTTCCTCGTGAAGAGAAATCAA-ACTTTATGATTTCTGACTCCT
1 TAGAGTC-AATCATTGACTTCCTCGTGAAGAGAAGTCAACA-TTTATTATTTTTGACTCCT
191552 TAGAGGAACT
Statistics
Matches: 202, Mismatches: 36, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
61 5 0.02
62 188 0.93
63 9 0.04
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (62 bp):
TAGAGTCAATCATTGACTTCCTCGTGAAGAGAAGTCAACATTTATTATTTTTGACTCCTCAG
Found at i:191465 original size:124 final size:124
Alignment explanation
Indices: 191245--191530 Score: 360
Period size: 124 Copynumber: 2.3 Consensus size: 124
191235 TCTTGTTTCC
* ** * *
191245 TAGAGTCAATATTTGACTCCCTCGTGAAGAGAAGTCAACATTTGTTATTTTTGGCTCTTTAGTAG
1 TAGAGTCAATATTTGACTCCCTCGTGAAGAGAAGTCAACATTTGTTATTTCTAACTCCTCAGTAG
* * ** *
191310 AGTAAATCCTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTTTGAATCCTCAG
66 AGTAAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTATTATTCCTGAATCCCCAG
* * *
191369 TAGAGTCAATATTT-AGCTCTCTCGTGAAGATAAGTCAACATTTTTTATTTCTAACTCCTCAGTA
1 TAGAGTCAATATTTGA-CTCCCTCGTGAAGAGAAGTCAACATTTGTTATTTCTAACTCCTCAGTA
* * *
191433 GAGTCAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTATTATTCCTGACTCCCCTG
65 GAGTAAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTATTATTCCTGAATCCCCAG
** * *
191493 TAGAGTCAA-ATTTTTTCTTCCTCGTGAAGAGAAATCAA
1 TAGAGTCAATA-TTTGACTCCCTCGTGAAGAGAAGTCAA
191531 ACTTTATGAT
Statistics
Matches: 138, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
123 2 0.01
124 136 0.99
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.36
Consensus pattern (124 bp):
TAGAGTCAATATTTGACTCCCTCGTGAAGAGAAGTCAACATTTGTTATTTCTAACTCCTCAGTAG
AGTAAATCATTGACTTCCTCATGAAGAGAAGTCAACCTTTATTATTCCTGAATCCCCAG
Found at i:191725 original size:36 final size:36
Alignment explanation
Indices: 191685--192076 Score: 595
Period size: 36 Copynumber: 10.9 Consensus size: 36
191675 CAACCTCGAG
* * * *
191685 CTTAGCCTACATGGAAGAGTAGTGAAGTAAAGCCAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
* *
191721 CTTAGCCTCTACAGAAGAGTAGTGAAGCAAAGCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
*
191757 CTTATCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
* * * *
191793 CTTAACCTCGACGGAAGAGTAATGAAGCAAATCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
191829 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
*
191865 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAACAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
*
191901 CTTAGCCTCCACGAAAGAGTAGTGAAGCAAAGCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
*
191937 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAACAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
* *
191973 CTTAGCCTCCATGAAAGAGTAGTGAAGCAAAGCAAT
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
* * * *
192009 CTTAGCCTTCACAGAAGAGTAGTGAAGCAAAGCCAC
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
*
192045 CTTAGCCTCCACGGAAGAGTAGTGAAGAAAAG
1 CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAG
192077 GCTAAAGAGT
Statistics
Matches: 322, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 322 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (36 bp):
CTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCAAT
Done.