Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002960.1 Hibiscus syriacus cultivar Beakdansim tig00006128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82957

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
902--1130
36
6.4
36
91
0
350
25
9
30
34
1.88
1274--1442
84
2.0
85
79
5
182
44
15
21
18
1.86
11338--11381
21
2.1
21
82
0
52
38
2
13
45
1.56
12686--12727
20
2.0
20
86
9
57
38
0
2
59
1.10
13739--13784
9
5.0
10
84
10
55
50
0
8
41
1.33
13739--13785
19
2.5
19
86
6
60
48
0
8
42
1.33
14942--15000
29
2.0
30
83
6
75
33
16
5
44
1.70
16913--17214
152
2.0
151
91
1
489
39
16
15
28
1.89
27688--27762
31
2.4
31
91
4
116
36
6
22
34
1.81
31293--31325
11
3.0
11
91
8
50
30
0
0
69
0.88
32467--32493
14
1.9
14
100
0
54
29
0
3
66
1.09
32481--32524
23
1.9
23
95
0
79
31
0
2
65
1.05
32485--32535
23
2.2
23
82
6
59
31
1
3
62
1.24
42166--42214
25
2.0
25
91
0
80
38
12
24
24
1.90
42649--42673
13
1.9
13
100
0
50
24
4
24
48
1.68
42879--42940
21
3.0
21
92
0
97
19
30
25
24
1.98
42879--42952
21
3.5
21
86
0
94
16
32
29
21
1.95
45776--45836
21
3.2
21
63
29
55
31
1
21
45
1.61
45770--45920
35
4.3
35
85
4
205
29
3
19
47
1.65
45770--45920
36
4.3
36
85
3
200
29
3
19
47
1.65
45772--45920
71
2.1
70
86
4
210
30
2
19
47
1.63
46446--46485
21
1.9
22
90
10
66
17
10
35
37
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46580--46646
19
3.5
19
89
0
89
37
13
8
40
1.76
46711--46770
29
2.0
31
90
6
97
41
16
6
35
1.75
48009--48056
20
2.5
19
83
12
62
29
12
4
54
1.56
49261--49302
21
2.0
21
95
0
75
30
28
16
23
1.96
49409--49475
19
3.5
19
91
0
89
35
13
10
40
1.79
49540--49599
29
2.0
31
90
6
97
41
16
6
35
1.75
50829--50860
15
2.1
15
94
0
55
53
15
25
6
1.65
54137--54197
21
3.2
21
63
29
55
32
4
19
42
1.73
54131--54245
35
3.3
35
90
3
178
30
5
19
45
1.72
55584--55614
16
1.9
16
93
0
53
19
12
19
48
1.81
73909--73989
38
2.2
36
82
4
90
54
2
1
41
1.21
75280--75398
50
2.4
50
81
1
139
31
10
12
46
1.75

Tables:   1

The End!