genome.fa.s2961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002961.1 Hibiscus syriacus cultivar Beakdansim tig00006129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121635

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4979--5017	8	5.2	8	82	17	57	33	0	0	66	0.92
4975--5022	21	2.3	21	96	0	87	29	0	0	70	0.87
4987--5018	13	2.5	13	94	0	55	31	0	0	68	0.90
7287--7339	3	17.7	3	84	0	52	28	33	3	33	1.75
10267--10306	20	2.0	20	95	0	71	37	30	2	30	1.71
16375--16410	15	2.3	15	90	4	54	16	11	30	41	1.83
16384--16424	15	2.6	16	88	7	57	14	7	29	48	1.71
17072--17146	23	3.3	23	75	17	75	41	2	0	56	1.13
17074--17149	15	5.0	15	73	17	59	42	2	0	55	1.14
17083--17154	22	3.2	22	73	13	58	43	2	0	54	1.15
18100--18124	12	2.1	12	100	0	50	64	8	0	28	1.22
21375--21414	14	3.1	13	82	10	55	60	0	0	40	0.97
22649--22679	16	1.9	16	100	0	62	16	19	58	6	1.59
22805--22873	3	23.0	3	87	0	102	60	0	1	37	1.06
25074--25191	59	2.0	59	96	0	218	43	14	11	31	1.80
29217--29258	22	2.0	21	90	4	66	45	2	2	50	1.27
30732--30763	10	3.4	10	87	12	50	81	0	0	18	0.70
30732--30761	16	1.9	16	93	6	53	83	0	0	16	0.65
31020--31062	18	2.5	17	85	7	61	67	2	4	25	1.22
31455--31556	34	2.9	36	88	11	165	27	14	14	43	1.85
32102--32557	105	4.3	106	90	3	666	21	18	26	33	1.96
32102--32557	211	2.1	212	88	2	675	21	18	26	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33160--33613	65	6.7	65	72	11	266	38	10	19	30	1.86
33292--33554	36	7.4	36	76	9	245	39	12	19	27	1.88
33244--33613	138	2.7	138	84	0	481	38	11	19	30	1.87
33328--33512	102	1.8	102	85	2	264	39	13	17	29	1.88
33976--34011	18	2.0	18	88	0	54	41	30	8	19	1.81
34414--34468	22	2.5	22	96	0	101	23	12	25	38	1.90
35118--35164	17	2.8	17	79	20	55	0	17	6	76	0.98
35101--35157	28	2.1	27	84	9	73	1	17	7	73	1.14
35089--35199	44	2.6	42	78	15	106	1	15	7	75	1.10
35151--35178	11	2.5	11	100	0	56	0	7	7	85	0.73
35120--35202	16	5.1	15	74	20	62	0	16	6	77	0.97
35118--35199	7	11.3	7	75	13	60	0	15	6	78	0.95
38326--38364	2	19.5	2	100	0	78	51	0	0	48	1.00
38878--38920	18	2.5	17	85	7	61	67	2	4	25	1.22
39279--39417	37	3.8	37	84	9	178	30	13	13	42	1.83
39310--39413	34	3.0	34	88	9	156	29	14	12	43	1.82
58799--58918	60	2.0	60	100	0	240	18	35	21	25	1.96
63822--63874	22	2.3	24	84	12	76	5	9	3	81	0.98
64643--64682	21	1.9	21	84	0	53	37	10	0	52	1.35
64681--64790	30	3.7	30	83	2	132	22	15	11	50	1.77
68047--68120	36	2.1	35	82	5	85	48	5	1	44	1.34
70536--70573	20	1.9	19	94	5	67	31	23	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71987--72020	17	2.0	17	100	0	68	47	23	11	17	1.81
75487--75511	2	12.5	2	100	0	50	52	0	0	48	1.00
76400--76615	105	2.0	106	99	0	425	18	18	16	46	1.84
79704--79756	20	2.7	19	83	13	63	75	9	1	13	1.12
79710--79757	20	2.3	21	89	10	73	77	10	2	10	1.09
79767--79819	27	2.0	27	89	7	83	32	0	0	67	0.91
79759--79803	21	2.1	22	88	12	67	33	0	2	64	1.06
80484--80557	33	2.3	33	81	6	89	25	4	12	58	1.52
81519--81560	20	2.0	21	90	4	68	23	0	21	54	1.44
86481--86508	2	14.0	2	100	0	56	50	0	0	50	1.00
94187--94281	31	3.1	31	78	3	102	34	20	17	27	1.95
94415--94450	17	2.0	19	89	10	58	38	11	5	44	1.63
94934--95098	64	2.6	64	83	7	201	26	19	19	35	1.95
98428--98522	31	3.1	31	80	3	111	34	21	17	26	1.95
98656--98691	17	2.0	19	89	10	58	38	11	5	44	1.63
99178--99337	64	2.5	65	81	6	175	25	20	19	35	1.96
101377--101427	25	2.0	25	96	0	93	37	5	11	45	1.65
103147--103180	16	2.1	16	89	10	52	58	14	0	26	1.36
105414--105455	2	21.0	2	90	0	57	47	0	47	4	1.23
105410--105442	16	2.1	16	100	0	66	51	0	36	12	1.39
105408--105443	18	2.0	18	94	0	63	50	0	36	13	1.43
106420--106493	31	2.3	32	76	2	78	29	20	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106464--106525	27	2.3	27	88	2	88	29	20	17	32	1.96
108407--108432	2	13.0	2	100	0	52	50	0	0	50	1.00
109335--109359	12	2.1	12	100	0	50	32	36	8	24	1.84
112430--112533	46	2.3	46	93	5	183	19	29	19	31	1.96
114258--114289	2	16.0	2	100	0	64	50	0	0	50	1.00
114834--114877	21	2.0	22	82	4	54	63	0	2	34	1.07
114961--114990	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1

The End!