genome.fa.s2962.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002962.1 Hibiscus syriacus cultivar Beakdansim tig00006130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206078

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9298--9431	65	2.0	66	97	1	252	48	9	1	40	1.45
15569--15610	19	2.2	19	100	0	84	30	11	26	30	1.92
17390--17444	27	2.0	27	82	0	65	27	7	16	49	1.72
17677--17744	32	2.1	33	88	2	102	42	4	8	44	1.55
18673--18748	2	38.0	2	100	0	152	50	0	0	50	1.00
20088--20145	23	2.5	23	80	0	71	48	5	6	39	1.52
23182--23223	21	2.0	21	86	13	61	59	4	4	30	1.39
44916--44945	3	10.0	3	100	0	60	33	0	0	66	0.92
45087--45161	20	3.7	21	82	8	84	41	24	18	16	1.90
45129--45338	20	10.5	20	83	5	228	37	25	17	19	1.94
45843--45980	19	7.7	19	77	18	152	45	18	21	15	1.85
45843--45974	53	2.5	53	93	2	221	46	18	20	14	1.83
45951--46066	53	2.2	52	86	3	160	18	23	18	38	1.93
45970--46087	53	2.2	53	96	3	220	13	24	17	44	1.85
45989--46087	20	5.4	19	83	14	136	14	23	17	45	1.84
46194--46230	14	2.6	14	91	0	65	45	21	0	32	1.52
47634--47694	21	2.9	21	72	0	68	21	18	36	24	1.95
48247--48303	14	3.7	14	75	20	51	43	22	22	10	1.84
48228--48317	33	2.7	33	94	0	162	45	21	22	11	1.82
48187--48325	52	2.7	52	73	8	138	46	22	21	10	1.81
48153--48317	19	9.2	19	77	13	152	46	23	20	10	1.81
48321--48412	19	5.4	18	72	24	83	7	17	28	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48337--48395	14	3.9	14	76	20	64	6	16	28	47	1.72
48321--48444	33	3.7	33	91	1	185	8	17	27	45	1.78
48370--48426	14	3.7	14	72	20	51	8	22	24	43	1.81
50365--50471	19	5.7	20	80	15	113	47	18	22	11	1.80
50363--50427	21	3.1	21	86	4	105	49	15	24	10	1.76
50488--50544	14	3.7	14	75	20	60	8	24	22	43	1.81
50472--50551	33	2.4	33	95	0	142	8	21	22	47	1.78
50532--50605	21	3.5	21	80	7	96	12	21	18	47	1.81
50685--50755	33	2.2	33	97	0	133	47	18	23	9	1.78
50707--50755	14	2.8	19	65	28	54	46	20	24	8	1.77
50689--50745	14	3.7	14	70	20	51	45	21	24	8	1.80
51137--51347	20	10.5	20	85	5	264	18	18	27	35	1.94
52335--52360	3	8.7	3	100	0	52	69	0	0	30	0.89
59914--59942	2	14.5	2	100	0	58	51	0	0	48	1.00
61304--61433	65	2.0	65	100	0	260	40	18	10	30	1.85
61761--61798	3	12.7	3	100	0	76	34	0	0	65	0.93
62227--62260	2	17.0	2	100	0	68	50	0	0	50	1.00
64775--65265	254	1.9	255	93	3	846	27	13	19	38	1.90
65561--65681	44	2.8	44	96	0	215	40	19	13	26	1.88
76530--76583	21	2.6	20	85	8	72	62	7	0	29	1.22
76730--76799	29	2.4	29	95	0	122	38	21	20	20	1.94
77114--77153	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77722--77973	124	2.0	122	93	3	434	36	3	11	48	1.56
83628--83674	22	2.1	22	85	14	62	53	8	0	38	1.32
94262--94291	2	15.0	2	100	0	60	50	0	0	50	1.00
95294--95335	21	2.0	21	86	9	59	23	35	21	19	1.96
95446--95509	14	4.4	14	75	21	60	31	6	7	54	1.54
96023--96099	33	2.3	33	82	8	95	23	10	15	50	1.74
99506--99548	17	2.6	16	82	13	52	27	2	4	65	1.25
100562--100650	29	3.1	29	85	0	124	17	40	28	13	1.88
100665--100690	10	2.6	10	100	0	52	19	50	19	11	1.77
100675--100752	41	1.9	41	100	0	156	24	43	17	14	1.86
100710--100785	33	2.3	33	90	2	116	26	40	18	14	1.89
100976--101011	11	3.2	11	84	7	54	22	22	19	36	1.95
101301--101353	28	1.9	27	88	3	79	32	1	16	49	1.57
101300--101364	27	2.3	29	82	10	82	36	1	15	46	1.55
101480--101534	18	3.4	18	65	31	52	38	0	9	52	1.33
101562--101601	21	1.9	21	100	0	80	27	0	15	57	1.38
101775--101848	30	2.4	30	78	14	80	39	1	9	50	1.44
102215--102610	49	7.2	49	76	22	378	45	13	0	40	1.46
102305--102630	60	5.4	60	94	3	586	45	14	0	39	1.47
102615--102654	19	2.1	19	90	0	62	47	15	0	37	1.45
105528--105581	28	1.9	28	96	0	99	57	12	0	29	1.36
105524--105588	28	2.3	28	84	10	96	55	10	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105558--105606	21	2.3	21	85	3	71	53	16	0	30	1.43
106247--106404	30	5.0	30	78	13	181	11	17	47	23	1.80
106323--106408	10	8.7	10	76	19	67	10	16	50	23	1.76
106311--106389	39	2.0	39	100	0	158	12	16	48	22	1.80
106263--106408	69	2.1	70	92	1	240	10	17	47	23	1.79
107287--107343	21	2.8	20	73	13	53	56	5	0	38	1.22
107815--107856	2	21.0	2	100	0	84	50	0	0	50	1.00
108965--109014	15	3.2	16	77	11	50	52	0	0	48	1.00
113234--113484	63	4.0	63	97	0	466	35	16	23	25	1.95
113755--113797	22	2.0	21	82	17	52	53	11	0	34	1.37
116563--116601	2	19.5	2	100	0	78	51	0	0	48	1.00
117774--117915	72	2.1	69	79	13	152	52	4	4	37	1.45
117397--118288	470	1.9	470	95	1	1628	43	7	8	39	1.64
119113--119146	14	2.4	14	100	0	68	44	14	0	41	1.45
120596--120660	31	2.3	28	80	15	71	53	3	0	43	1.16
120719--120760	21	2.0	21	86	9	59	23	35	21	19	1.96
120871--120939	14	4.8	14	73	19	61	30	8	7	53	1.59
121462--121524	33	1.9	33	90	6	101	26	12	15	44	1.83
124937--124979	17	2.6	16	82	13	52	27	2	4	65	1.25
126667--126723	21	2.8	20	73	13	53	56	5	0	38	1.22
127195--127252	2	29.0	2	100	0	116	50	0	0	50	1.00
127831--128069	125	1.9	124	94	2	426	38	2	10	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128035--128105	29	2.5	29	82	15	78	46	1	5	46	1.35
135640--135721	32	2.7	28	72	20	67	50	13	1	35	1.50
135657--135719	32	2.0	32	87	12	94	50	11	1	36	1.47
135668--135717	16	3.1	16	72	16	50	50	14	0	36	1.43
139843--139885	22	2.0	21	82	17	52	53	9	0	37	1.33
140365--140398	11	3.2	11	95	4	61	35	0	0	64	0.94
147712--147839	63	2.0	63	87	3	186	35	18	18	26	1.94
148069--148127	27	2.2	27	84	6	75	38	10	1	49	1.47
150700--150725	12	2.2	12	100	0	52	26	0	38	34	1.57
153274--153319	22	2.0	23	91	4	76	45	4	0	50	1.21
158125--158167	21	2.1	21	83	8	63	51	0	2	46	1.13
159965--159994	7	4.3	7	95	0	51	30	0	0	70	0.88
160627--160703	33	2.3	33	84	8	104	24	10	15	49	1.76
172912--173279	186	2.0	185	95	3	674	32	26	15	25	1.96
174677--175003	163	2.0	162	97	0	618	44	8	8	37	1.66
180340--180378	15	2.6	15	84	8	53	43	2	5	48	1.38
194295--194323	2	14.5	2	100	0	58	51	0	0	48	1.00

Tables:   1

The End!