Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002963.1 Hibiscus syriacus cultivar Beakdansim tig00006131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90944

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3382--3491
46
2.4
46
92
4
186
31
22
22
22
1.98
5636--5756
62
2.0
62
85
7
169
55
14
7
22
1.64
7208--7236
12
2.4
12
100
0
58
6
44
31
17
1.75
13527--13592
34
1.9
34
93
0
114
42
12
6
39
1.67
16393--16701
43
7.2
43
78
7
238
33
20
21
23
1.97
16419--16701
85
3.3
84
80
8
288
33
20
21
24
1.97
16465--16698
128
1.8
128
81
3
292
35
20
21
23
1.96
19583--19972
42
9.4
42
82
6
330
31
18
22
26
1.97
19590--19972
83
4.6
82
85
7
472
31
18
22
26
1.97
19590--19972
125
3.1
125
89
2
576
31
18
22
26
1.97
21349--21556
36
5.8
36
89
1
301
32
23
25
18
1.97
21997--22040
21
2.1
21
82
0
52
54
6
9
29
1.58
27368--27402
2
17.5
2
100
0
70
51
48
0
0
1.00
27402--27462
2
30.5
2
100
0
122
50
0
0
49
1.00
39285--39534
117
2.1
117
87
0
383
32
19
32
16
1.94
39285--39596
117
2.7
116
84
4
333
32
19
32
16
1.93
40203--40237
15
2.3
15
95
0
61
20
11
31
37
1.88
47428--47478
23
2.2
23
85
0
66
33
13
19
33
1.91
50509--50555
21
2.4
20
80
13
53
38
0
4
57
1.18
52439--52516
21
3.8
21
83
3
97
19
21
25
33
1.97
52439--52520
42
2.0
40
85
4
110
20
20
26
31
1.98
53799--53853
25
2.2
25
100
0
110
18
10
25
45
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56318--56348
8
3.9
8
100
0
62
51
0
25
22
1.48
57028--57077
23
2.2
22
82
3
55
60
4
4
32
1.34
58381--58501
56
2.2
56
90
0
188
36
14
19
28
1.92
66599--66653
27
1.9
30
85
10
80
38
5
1
54
1.34
68598--68628
6
5.2
6
100
0
62
35
48
16
0
1.46
68629--68692
5
12.8
5
98
0
119
1
40
40
17
1.59
69566--69616
2
24.0
2
92
7
75
47
5
0
47
1.26
72402--72458
17
3.4
17
77
0
60
56
3
14
26
1.54
75234--75272
2
19.5
2
100
0
78
51
0
0
48
1.00
83470--83515
2
23.5
2
82
4
58
47
0
4
47
1.21
88489--88640
20
7.7
20
74
12
100
38
27
14
19
1.91
88634--88681
21
2.3
21
82
3
62
45
16
20
16
1.85
89042--89090
20
2.5
20
96
0
89
20
22
14
42
1.88

Tables:   1

The End!