genome.fa.s2965.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002965.1 Hibiscus syriacus cultivar Beakdansim tig00006133_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79633

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5780--5816	15	2.5	15	95	0	65	27	18	18	35	1.95
5986--6012	2	13.5	2	100	0	54	48	0	0	51	1.00
6138--6171	17	1.9	18	88	5	52	50	0	2	47	1.16
6773--6813	18	2.2	19	86	4	57	65	7	2	24	1.30
6787--6833	18	2.6	18	82	3	58	59	6	6	27	1.46
9018--9077	14	4.1	15	73	25	56	73	0	3	23	0.98
9014--9077	32	2.1	31	85	8	87	71	0	3	25	1.00
9020--9080	18	3.3	18	71	13	61	75	0	3	21	0.94
10992--11034	19	2.2	20	83	4	52	48	0	0	51	1.00
18140--18216	33	2.3	33	82	8	95	50	15	10	23	1.74
18727--18795	14	4.8	14	73	19	61	53	7	8	30	1.59
18905--18946	21	2.0	21	86	9	59	19	21	35	23	1.96
19005--19069	31	2.3	28	80	15	71	43	0	3	53	1.16
27435--27459	2	12.5	2	100	0	50	52	0	0	48	1.00
28260--28294	2	17.5	2	100	0	70	51	0	0	48	1.00
31137--31179	22	2.0	21	82	17	52	37	0	9	53	1.33
33358--33400	22	2.0	21	82	17	52	34	0	11	53	1.37
39593--39652	31	1.9	31	93	0	102	41	5	8	45	1.56
39675--40275	22	27.6	22	88	2	872	47	10	0	40	1.45
41681--41757	33	2.3	33	82	8	95	50	15	10	23	1.74
42266--42334	14	4.8	14	72	19	52	55	8	5	30	1.54
42445--42486	21	2.0	21	86	9	59	19	21	35	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46626--46670	18	2.5	18	96	0	81	17	33	22	26	1.96
51334--51376	22	2.0	21	82	17	52	37	0	9	53	1.33
53860--53987	63	2.0	63	88	5	188	25	19	18	35	1.95
58380--58416	15	2.5	15	95	0	65	27	18	18	35	1.95
58586--58612	2	13.5	2	100	0	54	48	0	0	51	1.00
58740--58773	17	1.9	18	88	5	52	50	0	2	47	1.16
59377--59437	19	3.3	19	81	2	61	60	6	4	27	1.42
61637--61680	14	2.8	15	80	19	54	77	0	2	20	0.88
63598--63640	19	2.2	20	83	4	52	48	0	0	51	1.00
70729--70805	33	2.3	33	82	8	95	50	15	10	23	1.74
71307--71375	14	4.8	14	73	19	61	53	8	7	30	1.59

Tables:   1

The End!