Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002968.1 Hibiscus syriacus cultivar Beakdansim tig00006137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87614

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16162--16274
55
2.1
55
86
3
156
41
15
10
32
1.81
17988--18171
60
3.1
60
75
3
163
36
15
16
30
1.90
29820--29893
28
2.6
29
82
6
73
43
1
4
51
1.29
29836--29893
28
2.1
28
87
6
82
43
1
1
53
1.21
39074--40458
691
2.0
691
100
0
2770
28
16
22
32
1.95
40450--40717
132
2.0
132
91
1
439
34
13
17
34
1.89
40948--40974
2
13.5
2
100
0
54
51
0
0
48
1.00
45347--45387
2
20.5
2
94
0
73
51
2
0
46
1.14
58639--58706
3
22.7
3
96
0
127
32
0
0
67
0.91
59758--59802
21
2.3
19
84
7
54
17
31
20
31
1.96
62809--62842
6
5.5
6
86
6
50
17
26
17
38
1.92
65753--65787
14
2.4
15
95
4
63
48
0
0
51
1.00
66189--66234
15
3.1
15
78
12
51
73
2
0
23
0.94
66696--66749
2
27.0
2
100
0
108
50
0
0
50
1.00
67624--67694
18
3.8
18
75
17
65
69
1
2
26
1.11
68540--68704
46
3.6
46
97
0
294
23
23
9
44
1.81
68540--68710
26
7.3
25
74
22
174
23
22
8
45
1.80
68554--68678
20
5.7
20
74
20
106
21
25
8
44
1.81
69191--69240
20
2.5
19
84
15
66
72
0
6
22
1.07
69264--69383
38
3.1
38
80
7
125
46
10
5
37
1.62
69291--69409
38
3.0
39
74
14
102
42
9
5
42
1.61
69266--69514
75
3.3
74
72
13
206
41
12
6
39
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69461--69535
37
2.0
38
84
10
100
40
14
5
40
1.69
73431--73502
19
3.7
19
96
1
126
18
26
25
30
1.98
73431--73502
9
7.6
9
80
11
81
18
26
25
30
1.98
73506--73544
17
2.3
17
100
0
78
17
46
23
12
1.83
80725--80814
10
9.3
9
72
12
63
17
26
27
27
1.98
80754--80812
19
3.1
19
95
0
100
18
23
30
27
1.98
80811--80853
22
2.0
22
95
0
77
18
46
23
11
1.82
82577--82709
60
2.2
59
81
12
148
36
19
4
39
1.72

Tables:   1

The End!