genome.fa.s297.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000297.1 Hibiscus syriacus cultivar Beakdansim tig00000546_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83983

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3604--3646	20	2.2	20	86	0	59	34	11	16	37	1.85
16812--16925	36	3.2	35	71	9	104	25	15	14	43	1.85
16796--16970	72	2.4	75	84	8	218	26	17	13	41	1.87
16812--17007	73	2.7	72	80	10	177	26	16	15	40	1.89
17064--17139	36	2.1	36	90	0	116	22	21	15	40	1.90
16975--17164	101	1.9	103	88	3	294	30	19	13	36	1.90
17339--17864	105	5.0	105	88	3	742	34	26	17	21	1.95
18408--18511	37	2.8	37	85	0	127	42	13	13	30	1.83
18868--18910	18	2.5	17	85	7	61	25	4	2	67	1.22
19419--19448	2	15.0	2	92	0	51	46	0	0	53	1.00
25402--25644	94	2.7	94	83	10	296	30	18	18	32	1.95
26764--27953	165	7.2	161	83	5	1163	30	24	20	25	1.98
26764--27953	578	2.1	577	86	2	1672	30	24	20	25	1.98
26764--27953	84	14.4	83	78	6	1042	30	24	20	25	1.98
28314--28362	2	25.0	2	83	4	55	44	4	2	48	1.33
30519--30548	15	1.9	16	93	6	53	46	13	26	13	1.80
31546--31583	20	1.9	20	88	0	58	26	23	26	23	2.00
33098--33226	21	6.1	21	75	13	113	20	18	24	36	1.95
33118--33226	42	2.6	42	91	0	173	20	18	24	36	1.94
33799--33846	5	9.8	5	95	4	89	0	37	20	41	1.53
33843--33891	6	8.2	6	100	0	98	0	16	48	34	1.46
33969--34039	19	3.5	19	75	14	70	36	21	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33981--34050	21	3.3	21	73	15	81	41	20	17	21	1.90
33971--34050	42	1.9	42	97	0	151	40	20	17	22	1.92
54517--54579	27	2.3	27	84	15	85	4	20	0	74	0.99
54521--54562	21	2.0	20	86	4	57	2	19	0	78	0.86
54517--54580	28	2.3	28	87	12	89	4	20	0	75	0.99
54517--54602	28	3.1	28	79	17	74	3	19	2	74	1.07
54539--54643	44	2.6	41	78	15	110	1	18	3	76	1.03
54539--54643	9	11.6	9	67	12	54	1	18	3	76	1.03
59665--59698	17	2.1	16	89	10	52	14	35	8	41	1.77
61710--61750	14	2.9	14	88	3	55	46	7	19	26	1.76
61754--61843	29	3.1	29	95	0	153	61	6	12	20	1.53
61762--61813	14	3.6	14	71	7	50	59	5	15	19	1.56
61773--61843	14	4.9	15	71	11	67	61	7	11	19	1.51
61754--61859	29	3.7	29	92	0	131	60	5	14	19	1.54
61719--61856	58	2.4	57	78	6	145	56	5	15	22	1.60
71120--71231	2	57.5	2	82	11	117	46	0	3	49	1.25
73148--73185	20	1.9	20	84	10	51	26	2	2	68	1.16
78950--79075	29	4.3	29	70	9	78	40	22	7	30	1.80
79104--79145	13	3.3	13	80	6	59	16	21	42	19	1.89
79075--79112	7	5.4	7	100	0	76	26	28	31	13	1.93
79124--79175	18	2.9	18	91	0	86	17	15	46	21	1.84
79188--79255	9	7.1	9	83	9	82	36	27	20	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79188--79258	19	3.7	19	90	7	108	36	29	19	14	1.91
79188--79255	30	2.4	28	90	5	109	36	27	20	14	1.92

Tables:   1

The End!