Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002970.1 Hibiscus syriacus cultivar Beakdansim tig00006145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66726

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1347--1385
19
2.0
20
95
5
71
30
30
0
38
1.58
4223--4266
21
2.2
20
84
12
54
47
4
2
45
1.35
7576--7637
31
2.2
28
81
16
74
17
24
29
29
1.97
11494--11544
18
2.7
20
77
17
54
45
3
3
47
1.40
16010--16040
14
2.1
15
94
5
55
29
6
3
61
1.37
19470--19499
3
10.0
3
100
0
60
66
0
0
33
0.92
19893--19942
26
1.9
26
87
0
73
34
16
6
44
1.72
20029--20071
15
2.9
15
89
0
68
30
11
23
34
1.90
20126--20161
15
2.4
15
90
0
63
36
25
16
22
1.94
20383--20487
56
1.9
55
88
5
158
34
12
18
35
1.88
28254--28371
62
2.0
61
89
5
186
32
10
9
48
1.69
30331--30370
12
3.0
14
82
14
57
60
10
22
7
1.54
30340--30374
12
3.0
12
95
4
63
60
8
22
8
1.54
36461--36573
35
3.2
37
89
5
171
43
20
4
31
1.71
36512--36572
21
3.2
21
65
29
64
42
21
4
31
1.74
37688--37713
12
2.2
12
100
0
52
42
30
7
19
1.79
41062--41181
35
3.3
36
87
5
172
43
20
4
32
1.71
41113--41173
21
3.2
21
65
29
64
42
21
3
32
1.69
44245--44309
22
3.0
22
65
17
62
21
12
30
35
1.90
46217--46243
14
1.9
14
100
0
54
22
7
51
18
1.70
47096--47137
12
3.7
11
78
15
50
38
0
2
59
1.10
47413--47479
20
3.3
20
87
0
89
34
22
17
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47469--47507
20
2.0
20
94
0
69
41
20
12
25
1.88
47410--47499
40
2.2
40
78
7
94
36
21
16
25
1.94
47470--47515
20
2.3
20
88
0
65
41
21
13
23
1.88
48096--48189
42
2.3
42
84
1
118
28
23
12
35
1.92
48125--48203
21
3.8
21
98
0
149
20
24
16
39
1.92
49523--49562
20
2.0
20
85
5
53
47
22
12
17
1.81
55373--55397
2
12.5
2
100
0
50
48
0
0
52
1.00
55459--55491
2
16.5
2
100
0
66
51
0
0
48
1.00
58666--58889
36
6.2
36
89
0
340
32
22
26
18
1.97
59859--59888
14
2.1
14
100
0
60
40
30
6
23
1.80
63337--63425
18
4.9
18
78
0
106
34
17
24
22
1.96
63326--63425
36
2.8
36
82
0
128
35
17
24
24
1.95
64472--64501
14
2.1
14
100
0
60
40
30
6
23
1.80

Tables:   1

The End!