genome.fa.s2972.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002972.1 Hibiscus syriacus cultivar Beakdansim tig00006148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103718

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645--713	34	2.0	35	85	2	95	40	21	11	26	1.87
6398--6461	28	2.3	28	100	0	128	18	23	6	51	1.69
6778--6825	24	2.0	24	95	0	87	39	12	16	31	1.86
10984--11041	30	2.0	30	82	3	73	41	6	22	29	1.80
25315--25341	7	3.9	7	100	0	54	44	0	11	44	1.39
25337--25411	26	3.0	26	81	14	70	45	0	1	53	1.08
26160--26256	50	1.9	50	93	0	167	35	17	26	20	1.95
37038--37100	2	31.5	2	100	0	126	49	0	0	50	1.00
38467--38602	23	5.9	23	94	0	236	61	14	8	15	1.55
38500--38592	13	7.8	13	69	20	78	61	16	8	13	1.56
46759--46851	37	2.4	38	91	3	152	38	39	11	9	1.75
46840--47287	221	2.1	215	93	2	770	36	28	12	23	1.91
55748--55905	21	7.8	20	72	7	86	38	25	17	18	1.92
55872--56042	20	8.5	20	80	7	177	38	26	16	18	1.92
55872--56042	81	2.1	80	85	3	236	38	26	16	18	1.92
55872--56066	81	2.4	80	82	4	223	38	25	17	17	1.92
56054--56302	33	7.2	34	78	14	242	46	18	21	14	1.84
56068--56308	19	13.7	19	78	17	279	45	17	21	14	1.85
56096--56270	52	3.2	52	94	4	287	46	16	22	14	1.83
56054--56308	52	4.9	51	78	15	197	45	18	21	14	1.85
56317--56453	19	7.4	19	89	8	212	14	22	16	45	1.84
56336--56453	33	3.2	35	84	12	141	15	22	16	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56317--56453	52	2.5	55	90	8	208	14	22	16	45	1.84
56560--56596	14	2.6	14	91	0	65	45	21	0	32	1.52
58573--58629	14	3.7	14	77	20	60	45	22	21	10	1.82
58554--58646	33	2.8	33	95	0	168	47	21	20	10	1.80
58517--58651	19	7.6	19	76	16	128	45	23	19	11	1.82
58647--58775	19	7.3	19	75	17	125	8	17	28	45	1.77
58647--58738	33	2.8	33	93	3	150	7	18	28	45	1.76
58823--59292	93	5.1	93	98	0	895	46	18	12	22	1.82
60999--61088	14	5.7	14	69	23	54	44	21	23	11	1.84
60991--61105	33	3.5	33	91	0	194	46	19	22	11	1.81
60991--61110	19	7.1	18	68	24	75	45	19	23	11	1.82
61122--61178	14	3.7	14	75	20	60	8	24	22	43	1.81
61106--61186	33	2.5	33	95	0	144	8	22	22	46	1.78
61163--61238	21	3.7	21	83	3	109	11	25	17	46	1.82
61162--61239	41	1.9	41	97	0	147	12	25	16	44	1.83
61318--61388	33	2.2	33	86	0	97	49	15	22	12	1.78
61570--61624	22	2.5	22	84	0	83	20	14	40	25	1.90
61766--61884	20	5.8	20	76	8	98	18	16	24	40	1.91
61772--61885	40	2.8	41	84	5	151	16	16	25	41	1.89
61871--61953	21	4.0	21	73	6	78	25	16	24	33	1.96
61851--61949	42	2.4	43	77	11	100	21	18	23	37	1.94
68351--68390	18	2.2	19	86	8	57	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75837--75895	23	2.6	23	83	0	73	54	22	18	5	1.63
78161--78322	81	2.0	81	97	0	306	27	14	14	43	1.83
80074--80100	3	9.0	3	100	0	54	66	0	0	33	0.92
87248--87307	2	30.0	2	100	0	120	50	0	0	50	1.00
89206--89297	42	2.2	42	94	0	157	39	4	30	26	1.75
89638--89776	36	3.9	35	89	2	190	20	25	22	31	1.98
89638--89773	71	1.9	70	86	4	193	20	26	22	30	1.98
97871--98084	84	2.5	84	79	8	227	17	20	22	39	1.92
98257--98477	83	2.7	83	95	1	390	15	26	19	38	1.92

Tables:   1

The End!